Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009303

Physical Location & Seq

Genomic Coordinates Forward (+)

19869338 .. 19869757

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1212700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAACTCCAAAGGTAAGGACATGGAAGAGAAGGAAGCCAGAGAAATTCGATACCGGGGTGTGCGGAGGCGGCCATGGGGCAAGTATGCAGCGGAGATTCGTGACACAAATAGGCACAGCGCTCGTGTTTGGCTTGGGACTTTTAGCACAGCTGAAGAGGCAGCTAGAGCATATGACAGAGCGGCTTATGCCATGAGGGGTGGCTTAGCCATTTTGAACTTTCCTAATGAGTACCCTTCGGCAAGTGGCGGTTCTTCATCGGCATCGGCTAATTTTTTATCTTCTTCGTCTGCAATGCCTGGGACTATGCAGGGGCGAGCTGGTGGTGAGCAAAATGAAGTTCTTGTGTTAGAGTATTTGGATGATAAGTTGCTAGAGGAACTGCTTGATTGTGATCACCAAAAGAAGAACCAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009787 GO:0009789 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010118 GO:0010185 GO:0010186 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080134 GO:0090332 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

140

Amino Acids

15.49

Weight (kDa)

7.84

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	17 - 67	3.2e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04370 AT3G23220 AT5G43410
fragaria_vesca	FvH4_4g03450 FvH4_4g03450
malus_domestica	MD13G1212700.v1.1 MD16G1216400.v1.1
prunus_persica	Prupe.1G037700_v2.0.a1
pyrus_communis	pycom13g18450 pycom16g18100
rosa_chinensis	RchiOBHm_Chr4g0392451
rosa_laevigata	RLG00000009805
rosa_multiflora	Rmu_co8448865.1_g000001 Rmu_sc0010476.1_g000004 Rmu_sc0037407.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337710
rosa_rugosa	Rorug03G0338900
rosa_samantha	Rh4AG043000 Rh4BG038000 Rh4CG046000 Rh4DG040000
rosa_wichuraiana	Rw4G003360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	182
AciI	CCGC	5 cut(s)	64, 70, 92, 182, 249
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	1 cut(s)	233
AfeI	AGCGCT	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	152, 164, 320
AluI	AGCT	3 cut(s)	152, 164, 320
Aor51HI	AGCGCT	1 cut(s)	121
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	89, 161
ApoI	RAATTY	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	338, 389
BaeI	ACNNNNGTAYC	2 cut(s)	43, 76
BauI	CACGAG	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	101, 173
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	300
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	2 cut(s)	165, 374
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	4 cut(s)	71, 90, 162, 183
BlpI	GCTNAGC	1 cut(s)	205
BlsI	GCNGC	4 cut(s)	72, 91, 163, 184
Bme1390I	CCNGG	2 cut(s)	56, 300
BmrFI	CCNGG	2 cut(s)	56, 300
BmsI	GCATC	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	3 cut(s)	55, 74, 299
Bse3DI	GCAATG	1 cut(s)	300
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	55, 74, 299
BseGI	GGATG	1 cut(s)	367
BseJI	GATNNNNATC	1 cut(s)	393
BseMI	GCAATG	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	101, 173
BshFI	GGCC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	2 cut(s)	151, 316
BsmFI	GGGAC	2 cut(s)	151, 316
BsnI	GGCC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	394
Bsp1720I	GCTNAGC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	74
BspACI	CCGC	5 cut(s)	64, 70, 92, 182, 249
BspANI	GGCC	1 cut(s)	73
BsrBI	CCGCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	300
BssECI	CCNNGG	3 cut(s)	55, 74, 299
BssMI	GATC	1 cut(s)	394
BssSI	CACGAG	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	300
Bst6I	CTCTTC	2 cut(s)	21, 150
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	205
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	367
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 158, 167, 188
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	54, 298
BstV1I	GCAGC	2 cut(s)	101, 173
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	318
CfoI	GCGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	3 cut(s)	22, 75, 193
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	205
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	21, 150
EarI	CTCTTC	2 cut(s)	21, 150
Eco130I	CCWWGG	1 cut(s)	74
Eco47III	AGCGCT	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	3 cut(s)	25, 78, 196
FaiI	YATR	8 cut(s)	23, 76, 87, 172, 174, 189, 194, 308
FaqI	GGGAC	2 cut(s)	151, 316
FatI	CATG	3 cut(s)	21, 74, 192
FauNDI	CATATG	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	4 cut(s)	71, 90, 162, 183
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	4 cut(s)	71, 90, 162, 183
FspBI	CTAG	2 cut(s)	165, 374
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	4 cut(s)	71, 90, 162, 183
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	1 cut(s)	55
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	25, 78, 196
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	2 cut(s)	338, 389
Hpy188III	TCNNGA	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	25, 246
HpyCH4V	TGCA	3 cut(s)	89, 293, 310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 158, 167, 188
HpyF3I	CTNAG	1 cut(s)	205
Hsp92II	CATG	3 cut(s)	25, 78, 196
HspAI	GCGC	1 cut(s)	120
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	1 cut(s)	394
LpnPI	CCDG	6 cut(s)	52, 68, 285, 296, 306, 312
Lsp1109I	GCAGC	2 cut(s)	101, 173
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	2 cut(s)	165, 374
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	396
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	1 cut(s)	394
MboII	GAAGA	6 cut(s)	38, 167, 246, 273, 276, 418
MluCI	AATT	2 cut(s)	45, 271
MnlI	CCTC	4 cut(s)	60, 151, 189, 370
MspA1I	CMGCKG	2 cut(s)	92, 152
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	56, 300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	4 cut(s)	70, 158, 167, 188
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	74
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	3 cut(s)	25, 78, 196
NmuCI	GTSAC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	4 cut(s)	72, 91, 163, 184
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SatI	GCNGC	4 cut(s)	71, 90, 162, 183
Sau3AI	GATC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	56, 300
SetI	ASST	4 cut(s)	16, 154, 166, 322
SfaNI	GCATC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	45, 271
SsiI	CCGC	5 cut(s)	64, 70, 92, 182, 249
SspMI	CTAG	2 cut(s)	165, 374
StyD4I	CCNGG	2 cut(s)	54, 298
StyI	CCWWGG	1 cut(s)	74
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	45, 271
TauI	GCSGC	2 cut(s)	73, 185
TfiI	GAWTC	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	89, 161
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	3 cut(s)	17, 246, 351
XapI	RAATTY	1 cut(s)	45
XspI	CTAG	2 cut(s)	165, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.