Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009303

Physical Location & Seq

Genomic Coordinates Forward (+)

2616755 .. 2617527

Gene Structure 773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G037700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGACTCCAGAGGAAAGGTCATGGAAGAGAAGGAAGGCGGAGAGGTTCGATACCGGGGCGTGCGGAAGCGGCCGTGGGGCAAGTATGCCGCTGAGATTCGCGACTCAAACAGGCACGGTGCACGGGTTTGGCTTGGGACTTTTAACACGGCTGAAGAGGCAGCTAGAGCTTATGATCAAGCTGCTTATGCCATGAGGGGTGGCTTGGCCATTTTGAATTTTCCTACTGAGTACCCAGCAAGTGGTGGCTCTTCCTCTTCATCGTCTTCGGCTAATTTTTCATCATCAGTGGCTGGGACTAGCCAGGGGAGAGGTCGTGGGGAGCATGGAAATGAAGTTCTTGAGTTAGAGTACTTGGATGATAAGTTGCTAGAGGAACTGCTTGATTGTGATCACCAAAAGAAGAACAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009787 GO:0009789 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010118 GO:0010185 GO:0010186 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080134 GO:0090332 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

139

Amino Acids

15.2

Weight (kDa)

6.84

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04370 AT3G23220 AT5G43410
fragaria_vesca	FvH4_4g03450 FvH4_4g03450
malus_domestica	MD13G1212700.v1.1 MD16G1216400.v1.1
prunus_persica	Prupe.1G037700_v2.0.a1
pyrus_communis	pycom13g18450 pycom16g18100
rosa_chinensis	RchiOBHm_Chr4g0392451
rosa_laevigata	RLG00000009805
rosa_multiflora	Rmu_co8448865.1_g000001 Rmu_sc0010476.1_g000004 Rmu_sc0037407.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337710
rosa_rugosa	Rorug03G0338900
rosa_samantha	Rh4AG043000 Rh4BG038000 Rh4CG046000 Rh4DG040000
rosa_wichuraiana	Rw4G003360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccII	CGCG	1 cut(s)	102
AciI	CCGC	4 cut(s)	39, 64, 70, 90
AcoI	YGGCCR	2 cut(s)	71, 207
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	2 cut(s)	233, 353
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	303
AloI	GAACNNNNNNTCC	2 cut(s)	321, 353
AluBI	AGCT	3 cut(s)	164, 170, 182
AluI	AGCT	3 cut(s)	164, 170, 182
Alw21I	GWGCWC	1 cut(s)	124
Alw44I	GTGCAC	1 cut(s)	120
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	2 cut(s)	71, 207
ApaLI	GTGCAC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	161, 182
ApoI	RAATTY	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	169, 173
BceAI	ACGGC	2 cut(s)	58, 165
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	2 cut(s)	175, 391
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	3 cut(s)	165, 300, 371
BisI	GCNGC	4 cut(s)	71, 90, 162, 183
BlsI	GCNGC	4 cut(s)	72, 91, 163, 184
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	2 cut(s)	56, 305
BmrFI	CCNGG	2 cut(s)	56, 305
BpiI	GAAGAC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	55, 74, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	3 cut(s)	55, 74, 304
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	84, 219
BseSI	GKGCMC	1 cut(s)	124
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	169, 173
BseYI	CCCAGC	2 cut(s)	235, 293
Bsh1236I	CGCG	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	2 cut(s)	73, 209
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	55
BslFI	GGGAC	2 cut(s)	151, 310
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmFI	GGGAC	2 cut(s)	151, 310
BsnI	GGCC	2 cut(s)	73, 209
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	175, 391
Bsp68I	TCGCGA	1 cut(s)	102
BspACI	CCGC	4 cut(s)	39, 64, 70, 90
BspANI	GGCC	2 cut(s)	73, 209
BspCNI	CTCAG	2 cut(s)	85, 220
BspFNI	CGCG	1 cut(s)	102
BspQI	GCTCTTC	1 cut(s)	256
BssECI	CCNNGG	3 cut(s)	55, 74, 304
BssMI	GATC	2 cut(s)	175, 391
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	4 cut(s)	21, 150, 256, 262
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	93, 228
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	178, 394
BstMBI	GATC	2 cut(s)	175, 391
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 158, 167, 188
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	54, 303
BstSLI	GKGCMC	1 cut(s)	124
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	169, 173
BstV2I	GAAGAC	1 cut(s)	258
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	73, 209
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	294
BtuMI	TCGCGA	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	62
CaiI	CAGNNNCTG	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	232, 352
CviAII	CATG	3 cut(s)	22, 193, 326
CviQI	GTAC	2 cut(s)	232, 352
DdeI	CTNAG	2 cut(s)	93, 228
DpnI	GATC	2 cut(s)	177, 393
DpnII	GATC	2 cut(s)	175, 391
EaeI	YGGCCR	2 cut(s)	71, 207
EagI	CGGCCG	1 cut(s)	71
Eam1104I	CTCTTC	4 cut(s)	21, 150, 256, 262
EarI	CTCTTC	4 cut(s)	21, 150, 256, 262
EciI	GGCGGA	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	71
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	303
FaeI	CATG	3 cut(s)	25, 196, 329
FaiI	YATR	6 cut(s)	23, 87, 174, 189, 194, 327
FaqI	GGGAC	2 cut(s)	151, 310
FatI	CATG	3 cut(s)	21, 192, 325
FbaI	TGATCA	2 cut(s)	175, 391
Fnu4HI	GCNGC	4 cut(s)	71, 90, 162, 183
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	4 cut(s)	71, 90, 162, 183
FspBI	CTAG	3 cut(s)	165, 300, 371
GluI	GCNGC	4 cut(s)	71, 90, 162, 183
GsaI	CCCAGC	2 cut(s)	239, 297
HaeIII	GGCC	2 cut(s)	73, 209
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	3 cut(s)	25, 196, 329
HinfI	GANTC	3 cut(s)	5, 97, 104
HpaII	CCGG	1 cut(s)	55
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188III	TCNNGA	3 cut(s)	9, 101, 341
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	25, 29
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 158, 167, 188
HpyF3I	CTNAG	2 cut(s)	93, 228
Hsp92II	CATG	3 cut(s)	25, 196, 329
Ksp22I	TGATCA	2 cut(s)	175, 391
Kzo9I	GATC	2 cut(s)	175, 391
LguI	GCTCTTC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	7 cut(s)	22, 68, 97, 249, 279, 290, 317
Lsp1109I	GCAGC	2 cut(s)	169, 173
MaeI	CTAG	3 cut(s)	165, 300, 371
MalI	GATC	2 cut(s)	177, 393
MboI	GATC	2 cut(s)	175, 391
MboII	GAAGA	6 cut(s)	38, 167, 243, 249, 258, 415
MhlI	GDGCHC	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	217, 274
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	7 cut(s)	5, 37, 151, 189, 265, 305, 367
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	56, 305
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	4 cut(s)	70, 158, 167, 188
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	175, 391
NlaIII	CATG	3 cut(s)	25, 196, 329
NruI	TCGCGA	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	72, 91, 163, 184
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	2 cut(s)	235, 293
PspGI	CCWGG	1 cut(s)	303
PstNI	CAGNNNCTG	1 cut(s)	293
RruI	TCGCGA	1 cut(s)	102
RsaI	GTAC	2 cut(s)	233, 353
RsaNI	GTAC	2 cut(s)	232, 352
RseI	CAYNNNNRTG	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	4 cut(s)	71, 90, 162, 183
Sau3AI	GATC	2 cut(s)	175, 391
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	56, 305
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	6 cut(s)	21, 48, 166, 172, 184, 316
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	217, 274
SsiI	CCGC	4 cut(s)	39, 64, 70, 90
SspMI	CTAG	3 cut(s)	165, 300, 371
StyD4I	CCNGG	2 cut(s)	54, 303
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	217, 274
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	2 cut(s)	73, 92
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	2 cut(s)	161, 182
TspDTI	ATGAA	3 cut(s)	249, 270, 348
TspRI	CASTG	1 cut(s)	294
Van91I	CCANNNNNTGG	1 cut(s)	242
VneI	GTGCAC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	217
XspI	CTAG	3 cut(s)	165, 300, 371
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.