Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009303

Physical Location & Seq

Genomic Coordinates Forward (+)

3096278 .. 3099652

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCCGAGGACCGCAGAGGAGGGAAGGTCCAGACGGGAGAGGGCAAGGACGCCGGAGAGGTTCGATACCGGGGAGTGAGGAGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGCGACTCGAATAGGCATGGGCAGCGTGTTTGGCTCGGGACTTTCAACACTGCGGAAGAAGCCGCTAGAGCTTATGACAGAGCTGCTTATGCCATGAGGGGAGGTCTGGCCATTTTGAATTTTCCTAACGAGTATCCTTCCGGGACGACTGTTGGTTCTTCGTCGTCTTCGTCCTCGGCTTTTTCATCTTCTTCGTCTTCAATGCAAGCTGGGAATCAAGTTCTGGAGCTGGAGTACTTGGATGATAGGCTGCTGGAGGAACTGCTTGATTGTGAAGAAATGAAGAGCAAGAAGAAGGAGGAATTCCAAATTTCTTTGTTGGGAACAATTAAGATTCTCTGCGTTCCTGTTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009787 GO:0009789 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010118 GO:0010185 GO:0010186 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080134 GO:0090332 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

157

Amino Acids

17.2

Weight (kDa)

6.62

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	22 - 72	1.4e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04370 AT3G23220 AT5G43410
fragaria_vesca	FvH4_4g03450 FvH4_4g03450
malus_domestica	MD13G1212700.v1.1 MD16G1216400.v1.1
prunus_persica	Prupe.1G037700_v2.0.a1
pyrus_communis	pycom13g18450 pycom16g18100
rosa_chinensis	RchiOBHm_Chr4g0392451
rosa_laevigata	RLG00000009805
rosa_multiflora	Rmu_co8448865.1_g000001 Rmu_sc0010476.1_g000004 Rmu_sc0037407.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337710
rosa_rugosa	Rorug03G0338900
rosa_samantha	Rh4AG043000 Rh4BG038000 Rh4CG046000 Rh4DG040000
rosa_wichuraiana	Rw4G003360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	104, 117
AciI	CCGC	6 cut(s)	13, 85, 104, 107, 167, 177
AcoI	YGGCCR	3 cut(s)	3, 86, 222
AcsI	RAATTY	3 cut(s)	232, 416, 423
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	160, 232, 315
AluBI	AGCT	4 cut(s)	185, 197, 323, 343
AluI	AGCT	4 cut(s)	185, 197, 323, 343
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	3, 86, 222
ApeKI	GCWGC	3 cut(s)	136, 197, 364
ApoI	RAATTY	3 cut(s)	232, 416, 423
AspS9I	GGNCC	2 cut(s)	10, 28
AsuC2I	CCSGG	2 cut(s)	71, 256
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	10, 28
BalI	TGGCCA	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	273, 303
BbvI	GCAGC	3 cut(s)	148, 184, 351
BceAI	ACGGC	1 cut(s)	73
BciVI	GTATCC	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	71, 256
BfaI	CTAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	258
BisI	GCNGC	6 cut(s)	86, 105, 137, 177, 198, 365
BlsI	GCNGC	6 cut(s)	87, 106, 138, 178, 199, 366
BmcAI	AGTACT	1 cut(s)	350
Bme1390I	CCNGG	2 cut(s)	71, 256
Bme18I	GGWCC	2 cut(s)	10, 28
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	10, 28
BmrFI	CCNGG	2 cut(s)	71, 256
BpiI	GAAGAC	2 cut(s)	273, 303
BpmI	CTGGAG	3 cut(s)	359, 365, 389
BpuMI	CCSGG	2 cut(s)	71, 256
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	4 cut(s)	6, 70, 89, 288
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 332, 362
BseDI	CCNNGG	4 cut(s)	6, 70, 89, 288
BseGI	GGATG	1 cut(s)	361
BseRI	GAGGAG	2 cut(s)	33, 94
BseX3I	CGGCCG	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	148, 184, 351
BseYI	CCCAGC	1 cut(s)	323
Bsh1236I	CGCG	2 cut(s)	104, 117
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	5, 88, 224
BsiEI	CGRYCG	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	54, 70, 255
BslFI	GGGAC	2 cut(s)	166, 271
BsmFI	GGGAC	2 cut(s)	166, 271
BsnI	GGCC	3 cut(s)	5, 88, 224
BsoBI	CYCGRG	1 cut(s)	149
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	6 cut(s)	13, 85, 104, 107, 167, 177
BspANI	GGCC	3 cut(s)	5, 88, 224
BspFNI	CGCG	2 cut(s)	104, 117
BspQI	GCTCTTC	1 cut(s)	392
BssECI	CCNNGG	4 cut(s)	6, 70, 89, 288
BssNI	GRCGYC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	392
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	2 cut(s)	104, 117
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	5 cut(s)	136, 145, 173, 182, 203
BstSCI	CCNGG	2 cut(s)	69, 254
BstUI	CGCG	2 cut(s)	104, 117
BstV1I	GCAGC	3 cut(s)	148, 184, 351
BstV2I	GAAGAC	2 cut(s)	273, 303
BstZI	CGGCCG	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	3 cut(s)	5, 88, 224
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
BtuMI	TCGCGA	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	10, 28
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	2 cut(s)	131, 208
CviQI	GTAC	1 cut(s)	349
EaeI	YGGCCR	3 cut(s)	3, 86, 222
EagI	CGGCCG	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
EciI	GGCGGA	1 cut(s)	122
EclXI	CGGCCG	1 cut(s)	86
Eco47I	GGWCC	2 cut(s)	10, 28
Eco52I	CGGCCG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	416
FaeI	CATG	2 cut(s)	134, 211
FaiI	YATR	4 cut(s)	132, 189, 204, 209
FaqI	GGGAC	2 cut(s)	166, 271
FatI	CATG	2 cut(s)	130, 207
Fnu4HI	GCNGC	6 cut(s)	86, 105, 137, 177, 198, 365
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	6 cut(s)	86, 105, 137, 177, 198, 365
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	6 cut(s)	86, 105, 137, 177, 198, 365
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	3 cut(s)	359, 365, 389
HaeIII	GGCC	3 cut(s)	5, 88, 224
HapII	CCGG	3 cut(s)	54, 70, 255
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	134, 211
HinfI	GANTC	4 cut(s)	112, 119, 328, 448
HpaII	CCGG	3 cut(s)	54, 70, 255
Hpy188III	TCNNGA	4 cut(s)	31, 116, 151, 338
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	19, 261, 403
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	5 cut(s)	136, 145, 173, 182, 203
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	134, 211
LguI	GCTCTTC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	9 cut(s)	44, 67, 83, 206, 268, 309, 323, 329, 353
Lsp1109I	GCAGC	3 cut(s)	148, 184, 351
MaeI	CTAG	1 cut(s)	180
MboII	GAAGA	9 cut(s)	182, 264, 273, 294, 297, 303, 401, 409, 418
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	4 cut(s)	232, 416, 423, 441
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	113
Mox20I	TGGCCA	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	3 cut(s)	54, 70, 255
MspR9I	CCNGG	2 cut(s)	71, 256
MvnI	CGCG	2 cut(s)	104, 117
MwoI	GCNNNNNNNGC	5 cut(s)	136, 145, 173, 182, 203
NciI	CCSGG	2 cut(s)	71, 256
NlaIII	CATG	2 cut(s)	134, 211
NmeAIII	GCCGAG	2 cut(s)	31, 269
NruI	TCGCGA	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	112, 328, 448
PfoI	TCCNGGA	1 cut(s)	254
PkrI	GCNGC	6 cut(s)	87, 106, 138, 178, 199, 366
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	323
PspPI	GGNCC	2 cut(s)	10, 28
RruI	TCGCGA	1 cut(s)	117
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	6 cut(s)	86, 105, 137, 177, 198, 365
Sau96I	GGNCC	2 cut(s)	10, 28
ScaI	AGTACT	1 cut(s)	350
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	71, 256
SetI	ASST	7 cut(s)	30, 63, 187, 199, 220, 325, 345
SinI	GGWCC	2 cut(s)	10, 28
Sse9I	AATT	4 cut(s)	232, 416, 423, 441
SsiI	CCGC	6 cut(s)	13, 85, 104, 107, 167, 177
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	69, 254
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	2 cut(s)	64, 122
TasI	AATT	4 cut(s)	232, 416, 423, 441
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	3 cut(s)	88, 107, 179
TfiI	GAWTC	3 cut(s)	112, 328, 448
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	3 cut(s)	136, 197, 364
TspDTI	ATGAA	2 cut(s)	288, 410
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	2 cut(s)	10, 28
XapI	RAATTY	3 cut(s)	232, 416, 423
XspI	CTAG	1 cut(s)	180
ZrmI	AGTACT	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.