Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009303

Physical Location & Seq

Genomic Coordinates Reverse (-)

17435010 .. 17435405

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGATCAAGGAGGTCGAGGTGTCGGTGCCGAGCATGGAAAGTACCGGGGAGTTCGGAGACGACCTTGGGGAAAATATGCAGCAGAGATACGAGATTCGAGGAAGCACGGTGAACGTGTGTGGCTTGGAACGTTCGATACGGCAGAGGAAGCGGCTAGAGCCTATGACCAAGCTGCTTACTCCATGAGAGGCCAAGCAGCAATCCTTAACTTCCCTCATGAGTATAACATGGGGAGTGGTGTCTCTTCTTCCACCGCCATGGCTGGATCTTCCTCCGCCTCCGCCTCCGCTTCTTCTTCTTCTAGGCAAGTTTTTGAATTTGAGTACTTGGATGATAGTGTTTTGGAGGAGCTCCTTGAGGAAGGAGAGAAACCTAACAAGGGCAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009787 GO:0009789 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010118 GO:0010185 GO:0010186 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080134 GO:0090332 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

131

Amino Acids

14.34

Weight (kDa)

6.85

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	14 - 64	6.1e-17	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04370 AT3G23220 AT5G43410
fragaria_vesca	FvH4_4g03450 FvH4_4g03450
malus_domestica	MD13G1212700.v1.1 MD16G1216400.v1.1
prunus_persica	Prupe.1G037700_v2.0.a1
pyrus_communis	pycom13g18450 pycom16g18100
rosa_chinensis	RchiOBHm_Chr4g0392451
rosa_laevigata	RLG00000009805
rosa_multiflora	Rmu_co8448865.1_g000001 Rmu_sc0010476.1_g000004 Rmu_sc0037407.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337710
rosa_rugosa	Rorug03G0338900
rosa_samantha	Rh4AG043000 Rh4BG038000 Rh4CG046000 Rh4DG040000
rosa_wichuraiana	Rw4G003360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	5 cut(s)	152, 255, 276, 282, 288
AclI	AACGTT	1 cut(s)	131
AclWI	GGATC	2 cut(s)	12, 274
AcsI	RAATTY	1 cut(s)	317
AfaI	GTAC	2 cut(s)	44, 326
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	317
AluBI	AGCT	2 cut(s)	173, 352
AluI	AGCT	2 cut(s)	173, 352
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	2 cut(s)	52, 247
AlwI	GGATC	2 cut(s)	12, 274
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	3 cut(s)	80, 173, 197
ApoI	RAATTY	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	92, 160, 209
BceAI	ACGGC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	52, 247
BfaI	CTAG	2 cut(s)	156, 303
BisI	GCNGC	4 cut(s)	81, 153, 174, 198
BlsI	GCNGC	4 cut(s)	82, 154, 175, 199
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	46, 65, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	46, 65, 258
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	3 cut(s)	92, 160, 209
BshFI	GGCC	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	2 cut(s)	52, 247
BsmBI	CGTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	4, 266
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	5 cut(s)	152, 255, 276, 282, 288
BspANI	GGCC	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	2 cut(s)	12, 274
BspT107I	GGYRCC	1 cut(s)	26
BssECI	CCNNGG	3 cut(s)	46, 65, 258
BssMI	GATC	2 cut(s)	4, 266
BssT1I	CCWWGG	2 cut(s)	65, 258
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	250
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	2 cut(s)	7, 269
BstMAI	GTCTC	2 cut(s)	52, 247
BstMBI	GATC	2 cut(s)	4, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 158
BstSCI	CCNGG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	92, 160, 209
BstX2I	RGATCY	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	337
CciI	TCATGA	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	43, 325
CviAII	CATG	5 cut(s)	35, 184, 218, 229, 259
CviJI	RGCY	7 cut(s)	124, 155, 161, 173, 192, 263, 352
CviKI_1	RGCY	7 cut(s)	124, 155, 161, 173, 192, 263, 352
CviQI	GTAC	2 cut(s)	43, 325
DpnI	GATC	2 cut(s)	6, 268
DpnII	GATC	2 cut(s)	4, 266
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
EciI	GGCGGA	2 cut(s)	265, 271
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	65, 258
Eco24I	GRGCYC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	65, 258
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	65, 258
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	5 cut(s)	38, 187, 221, 232, 262
FaiI	YATR	8 cut(s)	36, 78, 165, 185, 219, 225, 230, 260
FatI	CATG	5 cut(s)	34, 183, 217, 228, 258
Fnu4HI	GCNGC	4 cut(s)	81, 153, 174, 198
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	4 cut(s)	81, 153, 174, 198
FspBI	CTAG	2 cut(s)	156, 303
GluI	GCNGC	4 cut(s)	81, 153, 174, 198
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	46
Hin1II	CATG	5 cut(s)	38, 187, 221, 232, 262
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	46
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	2 cut(s)	115, 131
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 158
HpySE526I	ACGT	2 cut(s)	115, 131
Hsp92II	CATG	5 cut(s)	38, 187, 221, 232, 262
Kzo9I	GATC	2 cut(s)	4, 266
LmnI	GCTCC	2 cut(s)	349, 357
LpnPI	CCDG	2 cut(s)	59, 249
Lsp1109I	GCAGC	3 cut(s)	92, 160, 209
MaeI	CTAG	2 cut(s)	156, 303
MaeII	ACGT	2 cut(s)	115, 131
MalI	GATC	2 cut(s)	6, 268
MboI	GATC	2 cut(s)	4, 266
MboII	GAAGA	6 cut(s)	237, 240, 261, 285, 288, 291
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	1 cut(s)	317
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	149, 158
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	2 cut(s)	4, 266
NlaIII	CATG	5 cut(s)	38, 187, 221, 232, 262
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	55
PagI	TCATGA	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	4 cut(s)	82, 154, 175, 199
Psp124BI	GAGCTC	1 cut(s)	354
Psp1406I	AACGTT	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	28
PsrI	GAACNNNNNNTAC	2 cut(s)	121, 153
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	2 cut(s)	44, 326
RsaNI	GTAC	2 cut(s)	43, 325
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	81, 153, 174, 198
Sau3AI	GATC	2 cut(s)	4, 266
ScaI	AGTACT	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	8 cut(s)	16, 22, 67, 118, 134, 175, 354, 376
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	5 cut(s)	152, 255, 276, 282, 288
SspMI	CTAG	2 cut(s)	156, 303
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	65, 258
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	2 cut(s)	118, 134
TaqI	TCGA	3 cut(s)	16, 98, 135
TasI	AATT	1 cut(s)	317
TatI	WGTACW	1 cut(s)	324
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	3 cut(s)	80, 173, 197
XapI	RAATTY	1 cut(s)	317
XspI	CTAG	2 cut(s)	156, 303
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.