Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009303

Physical Location & Seq

Genomic Coordinates Forward (+)

5861095 .. 5861532

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGACGAGGACCACAGACGAGGGAAGGTACAGATGGGAGAGACCAAGGACGCCGGAGAGGTTCGATACCGGGGCGTGAGGAGGCGGCCATGGGGGAAGTTCGCGGCGGAGATTCGCGACTCCAATAGGCATGGGGCGCGTGTTTGGCTCGGGACATTCAACACTGCGGAAGAAGCAGCTAGAGCTTATGACAGAGCTGCTTATGCCATGAGGGGTGGTTTGGCCATTTTGAATTTTCCTAACGAGTATCCTTCGGGGACTGCTGTTGGTGGTTCTTCGTCTTCGCCGTCGTCGGCCGTTTCGTCATCTTCGTCGGCCCTTTCGTCGTCTTCGTCTTCAATGCAAGCTGGGAATCAAGTTCTGGAGCTGGAGTACTTGGATGATAGGCTGCTGGAGGAACTGCTTGAGACTGAAGATATGAAGAGCAAAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009787 GO:0009789 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010118 GO:0010185 GO:0010186 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080134 GO:0090332 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

145

Amino Acids

15.9

Weight (kDa)

6.75

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	22 - 72	2.3e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04370 AT3G23220 AT5G43410
fragaria_vesca	FvH4_4g03450 FvH4_4g03450
malus_domestica	MD13G1212700.v1.1 MD16G1216400.v1.1
prunus_persica	Prupe.1G037700_v2.0.a1
pyrus_communis	pycom13g18450 pycom16g18100
rosa_chinensis	RchiOBHm_Chr4g0392451
rosa_laevigata	RLG00000009805
rosa_multiflora	Rmu_co8448865.1_g000001 Rmu_sc0010476.1_g000004 Rmu_sc0037407.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337710
rosa_rugosa	Rorug03G0338900
rosa_samantha	Rh4AG043000 Rh4BG038000 Rh4CG046000 Rh4DG040000
rosa_wichuraiana	Rw4G003360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	104, 117, 139
AciI	CCGC	4 cut(s)	85, 104, 107, 167
AcoI	YGGCCR	3 cut(s)	86, 222, 294
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	30, 374
AgsI	TTSAA	3 cut(s)	160, 232, 339
AluBI	AGCT	5 cut(s)	179, 185, 197, 347, 367
AluI	AGCT	5 cut(s)	179, 185, 197, 347, 367
Alw26I	GTCTC	2 cut(s)	35, 401
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	4 cut(s)	86, 222, 294, 315
ApeKI	GCWGC	3 cut(s)	176, 197, 388
ApoI	RAATTY	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	10, 316
AsuC2I	CCSGG	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	224
BbsI	GAAGAC	3 cut(s)	273, 321, 327
BbvI	GCAGC	3 cut(s)	184, 188, 375
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	2 cut(s)	271, 281
BciVI	GTATCC	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	35, 401
BfaI	CTAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	258
BisI	GCNGC	5 cut(s)	86, 105, 177, 198, 389
BlsI	GCNGC	5 cut(s)	87, 106, 178, 199, 390
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	10, 316
BmrFI	CCNGG	1 cut(s)	71
BpiI	GAAGAC	3 cut(s)	273, 321, 327
BpmI	CTGGAG	3 cut(s)	383, 389, 413
BpuEI	CTTGAG	1 cut(s)	425
BpuMI	CCSGG	1 cut(s)	71
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	45, 70, 89
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
BseDI	CCNNGG	3 cut(s)	45, 70, 89
BseGI	GGATG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	94
BseX3I	CGGCCG	1 cut(s)	294
BseXI	GCAGC	3 cut(s)	184, 188, 375
BseYI	CCCAGC	1 cut(s)	347
Bsh1236I	CGCG	3 cut(s)	104, 117, 139
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	4 cut(s)	88, 224, 296, 317
BsiEI	CGRYCG	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	54, 70
BslFI	GGGAC	2 cut(s)	166, 271
BsmAI	GTCTC	2 cut(s)	35, 401
BsmFI	GGGAC	2 cut(s)	166, 271
BsnI	GGCC	4 cut(s)	88, 224, 296, 317
Bso31I	GGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	149
Bsp19I	CCATGG	1 cut(s)	89
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	4 cut(s)	85, 104, 107, 167
BspANI	GGCC	4 cut(s)	88, 224, 296, 317
BspFNI	CGCG	3 cut(s)	104, 117, 139
BspQI	GCTCTTC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	45, 70, 89
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	2 cut(s)	45, 89
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	345
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	3 cut(s)	104, 117, 139
BstHHI	GCGC	1 cut(s)	139
BstMAI	GTCTC	2 cut(s)	35, 401
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	5 cut(s)	136, 145, 173, 182, 203
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	3 cut(s)	104, 117, 139
BstV1I	GCAGC	3 cut(s)	184, 188, 375
BstV2I	GAAGAC	3 cut(s)	273, 321, 327
BstZI	CGGCCG	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	4 cut(s)	88, 224, 296, 317
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
BtuMI	TCGCGA	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	345
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	10, 316
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	29, 373
CviAII	CATG	3 cut(s)	90, 131, 208
CviQI	GTAC	2 cut(s)	29, 373
EaeI	YGGCCR	3 cut(s)	86, 222, 294
EagI	CGGCCG	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
EciI	GGCGGA	1 cut(s)	122
EclXI	CGGCCG	1 cut(s)	294
Eco130I	CCWWGG	2 cut(s)	45, 89
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	10
Eco52I	CGGCCG	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	45, 89
ErhI	CCWWGG	2 cut(s)	45, 89
FaeI	CATG	3 cut(s)	93, 134, 211
FaiI	YATR	6 cut(s)	91, 132, 189, 204, 209, 419
FaqI	GGGAC	2 cut(s)	166, 271
FatI	CATG	3 cut(s)	89, 130, 207
Fnu4HI	GCNGC	5 cut(s)	86, 105, 177, 198, 389
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	5 cut(s)	86, 105, 177, 198, 389
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	5 cut(s)	86, 105, 177, 198, 389
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	3 cut(s)	383, 389, 413
HaeIII	GGCC	4 cut(s)	88, 224, 296, 317
HapII	CCGG	2 cut(s)	54, 70
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	93, 134, 211
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	3 cut(s)	112, 119, 352
HpaII	CCGG	2 cut(s)	54, 70
Hpy188III	TCNNGA	3 cut(s)	116, 151, 362
Hpy99I	CGWCG	4 cut(s)	292, 295, 316, 328
HpyAV	CCTTC	2 cut(s)	19, 261
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	5 cut(s)	136, 145, 173, 182, 203
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	93, 134, 211
HspAI	GCGC	1 cut(s)	137
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	6 cut(s)	67, 83, 333, 347, 353, 377
Lsp1109I	GCAGC	3 cut(s)	184, 188, 375
MaeI	CTAG	1 cut(s)	180
MboII	GAAGA	8 cut(s)	182, 267, 273, 300, 321, 327, 425, 433
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	1 cut(s)	232
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	6 cut(s)	14, 52, 72, 75, 204, 388
Mox20I	TGGCCA	1 cut(s)	224
MscI	TGGCCA	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	2 cut(s)	54, 70
MspR9I	CCNGG	1 cut(s)	71
MvnI	CGCG	3 cut(s)	104, 117, 139
MwoI	GCNNNNNNNGC	5 cut(s)	136, 145, 173, 182, 203
NciI	CCSGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	89
NlaIII	CATG	3 cut(s)	93, 134, 211
NruI	TCGCGA	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	5 cut(s)	284, 299, 308, 320, 329
PfeI	GAWTC	2 cut(s)	112, 352
PkrI	GCNGC	5 cut(s)	87, 106, 178, 199, 390
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	347
PspPI	GGNCC	2 cut(s)	10, 316
RruI	TCGCGA	1 cut(s)	117
RsaI	GTAC	2 cut(s)	30, 374
RsaNI	GTAC	2 cut(s)	29, 373
SapI	GCTCTTC	1 cut(s)	416
SatI	GCNGC	5 cut(s)	86, 105, 177, 198, 389
Sau96I	GGNCC	2 cut(s)	10, 316
ScaI	AGTACT	1 cut(s)	374
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	7 cut(s)	30, 63, 181, 187, 199, 349, 369
SinI	GGWCC	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	4 cut(s)	85, 104, 107, 167
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	2 cut(s)	45, 89
TaqI	TCGA	1 cut(s)	64
TasI	AATT	1 cut(s)	232
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	2 cut(s)	88, 107
TfiI	GAWTC	2 cut(s)	112, 352
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	3 cut(s)	176, 197, 388
TspDTI	ATGAA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	232
XspI	CTAG	1 cut(s)	180
ZrmI	AGTACT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.