Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009303

Physical Location & Seq

Genomic Coordinates Forward (+)

8287942 .. 8288602

Gene Structure 661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAACGTATAGAGTCTTATAACACGAATGAGATGAAATACAGAGGCGTACGAAAGCGTCCATGGGGAAAATATGCGGCGGAGATTCGCGACTCAGCTAGACACGGTGCTCGTGTTTGGCTTGGGACGTTTAACACAGCGGAAGACGCGGCTCGGGCTTATGATAGAGCAGCTTTCGGCATGAGAGGCCAAAGGGCCATTCTCAATTTTCCTCACGAGTATCAAATGATGAAGGACGGTCCAAATGGCAGCCACGAGAATGCAGTGGCTTCCTCGTCGTCGGGATATAGAGGAGGAGGTGGTGGTGATGATGGGAGGGAAGTTATTGAGTTCGAGTATTTGGATGATAGTTTATTGGAGGAGCTTTTAGATTATGGTGAGAGATCTAACCAAGACAATTGTAACGACGCAAACCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009787 GO:0009789 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010118 GO:0010185 GO:0010186 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080134 GO:0090332 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

139

Amino Acids

15.71

Weight (kDa)

5.24

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	13 - 63	3.2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04370 AT3G23220 AT5G43410
fragaria_vesca	FvH4_4g03450 FvH4_4g03450
malus_domestica	MD13G1212700.v1.1 MD16G1216400.v1.1
prunus_persica	Prupe.1G037700_v2.0.a1
pyrus_communis	pycom13g18450 pycom16g18100
rosa_chinensis	RchiOBHm_Chr4g0392451
rosa_laevigata	RLG00000009805
rosa_multiflora	Rmu_co8448865.1_g000001 Rmu_sc0010476.1_g000004 Rmu_sc0037407.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337710
rosa_rugosa	Rorug03G0338900
rosa_samantha	Rh4AG043000 Rh4BG038000 Rh4CG046000 Rh4DG040000
rosa_wichuraiana	Rw4G003360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccII	CGCG	2 cut(s)	90, 149
AciI	CCGC	5 cut(s)	77, 80, 140, 149, 415
AfaI	GTAC	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	3 cut(s)	98, 173, 364
AluI	AGCT	3 cut(s)	98, 173, 364
Alw21I	GWGCWC	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	2 cut(s)	187, 195
ApeKI	GCWGC	2 cut(s)	170, 249
AspS9I	GGNCC	2 cut(s)	195, 239
AsuHPI	GGTGA	2 cut(s)	317, 389
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	239
BauI	CACGAG	3 cut(s)	111, 215, 254
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	182, 261
BccI	CCATC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	99, 418
BglII	AGATCT	1 cut(s)	383
BisI	GCNGC	4 cut(s)	78, 150, 171, 250
BlsI	GCNGC	4 cut(s)	79, 151, 172, 251
Bme18I	GGWCC	1 cut(s)	239
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	195, 239
BpiI	GAAGAC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	108
BseRI	GAGGAG	3 cut(s)	306, 309, 374
BseXI	GCAGC	2 cut(s)	182, 261
Bsh1236I	CGCG	2 cut(s)	90, 149
BshFI	GGCC	2 cut(s)	189, 197
BsiHKAI	GWGCWC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	153
BsiWI	CGTACG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	189, 197
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	383
Bsp19I	CCATGG	1 cut(s)	62
Bsp68I	TCGCGA	1 cut(s)	90
BspACI	CCGC	5 cut(s)	77, 80, 140, 149, 415
BspANI	GGCC	2 cut(s)	189, 197
BspCNI	CTCAG	1 cut(s)	107
BspFNI	CGCG	2 cut(s)	90, 149
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	1 cut(s)	383
BssSI	CACGAG	3 cut(s)	111, 215, 254
BssT1I	CCWWGG	1 cut(s)	62
Bst2BI	CACGAG	3 cut(s)	111, 215, 254
Bst4CI	ACNGT	2 cut(s)	107, 239
BstDEI	CTNAG	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	2 cut(s)	90, 149
BstKTI	GATC	1 cut(s)	386
BstMBI	GATC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 155, 186
BstUI	CGCG	2 cut(s)	90, 149
BstV1I	GCAGC	2 cut(s)	182, 261
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BsuRI	GGCC	2 cut(s)	189, 197
BtgI	CCRYGG	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
BtuMI	TCGCGA	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	195, 239
CseI	GACGC	2 cut(s)	47, 155
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	2 cut(s)	63, 181
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	1 cut(s)	385
DpnII	GATC	1 cut(s)	383
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	2 cut(s)	66, 184
FaiI	YATR	8 cut(s)	11, 21, 64, 75, 162, 182, 288, 375
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	2 cut(s)	62, 180
Fnu4HI	GCNGC	4 cut(s)	78, 150, 171, 250
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	4 cut(s)	78, 150, 171, 250
FspBI	CTAG	2 cut(s)	99, 418
GluI	GCNGC	4 cut(s)	78, 150, 171, 250
HaeIII	GGCC	2 cut(s)	189, 197
HgaI	GACGC	2 cut(s)	47, 155
Hin1II	CATG	2 cut(s)	66, 184
HinfI	GANTC	3 cut(s)	14, 85, 92
HphI	GGTGA	2 cut(s)	317, 389
Hpy188III	TCNNGA	3 cut(s)	89, 215, 282
Hpy99I	CGWCG	3 cut(s)	280, 283, 410
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	2 cut(s)	107, 239
HpyCH4IV	ACGT	2 cut(s)	7, 128
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 155, 186
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	2 cut(s)	7, 128
Hsp92II	CATG	2 cut(s)	66, 184
Kzo9I	GATC	1 cut(s)	383
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	2 cut(s)	182, 261
MaeI	CTAG	2 cut(s)	99, 418
MaeII	ACGT	2 cut(s)	7, 128
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	1 cut(s)	385
MboI	GATC	1 cut(s)	383
MboII	GAAGA	1 cut(s)	155
MfeI	CAATTG	1 cut(s)	397
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	2 cut(s)	205, 397
MlyI	GAGTC	2 cut(s)	23, 86
MnlI	CCTC	9 cut(s)	38, 179, 222, 283, 284, 287, 290, 309, 352
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	397
Mva1269I	GAATGC	1 cut(s)	265
MvnI	CGCG	2 cut(s)	90, 149
MwoI	GCNNNNNNNGC	3 cut(s)	146, 155, 186
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	383
NlaIII	CATG	2 cut(s)	66, 184
NruI	TCGCGA	1 cut(s)	90
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	85
Pfl23II	CGTACG	1 cut(s)	49
PkrI	GCNGC	4 cut(s)	79, 151, 172, 251
PleI	GAGTC	2 cut(s)	22, 86
PpsI	GAGTC	2 cut(s)	22, 86
PsiI	TTATAA	1 cut(s)	21
PspLI	CGTACG	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	195, 239
PsuI	RGATCY	1 cut(s)	383
RruI	TCGCGA	1 cut(s)	90
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	4 cut(s)	78, 150, 171, 250
Sau3AI	GATC	1 cut(s)	383
Sau96I	GGNCC	2 cut(s)	195, 239
SchI	GAGTC	2 cut(s)	23, 86
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	6 cut(s)	10, 100, 131, 175, 301, 366
SinI	GGWCC	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	2 cut(s)	205, 397
SsiI	CCGC	5 cut(s)	77, 80, 140, 149, 415
SspMI	CTAG	2 cut(s)	99, 418
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	107, 239
TaiI	ACGT	2 cut(s)	10, 131
TaqI	TCGA	1 cut(s)	333
TasI	AATT	2 cut(s)	205, 397
TauI	GCSGC	2 cut(s)	80, 152
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	2 cut(s)	170, 249
TspDTI	ATGAA	2 cut(s)	50, 245
TspRI	CASTG	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	239
XspI	CTAG	2 cut(s)	99, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.