Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009303

Physical Location & Seq

Genomic Coordinates Forward (+)

14528084 .. 14528536

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g18100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACTCCAAAGCGAAGGACATGGAAGAGAAGGATGCCGGGGAAGTTCGATACCGGGGTGTGCGGAAGCGGCCATGGGGCAAGTATGCAGCGGAGATTCGCGACTCAAATAGGCACGGCGCGCGTGTTTGGCTTGGGACTTTTAACACAGCTGAAGAGGCAGCTAGAGCTTATGATAGAGCGGCTTATGCTATGAGGGGTGGCTTAGCCATTTTGAACTTTCCTAATGAGTACCCTTCGGCAAGTGGTGGCTCTTCATCTTCATCGGCATCGGCTAATTATTCATCTTCTTCGTCATCAATGCCTATGCAGGGGCGAGCTTGTGGTGGGCAAGATGAAGTTCTTGAGTTAGAGTACTTGGATGATAAGTTGCTAGAGGAGCTGCTAGATTGTGATCGATCAAAAGAAGAACAAGAAATAGTGAGATTAATAAGCATCTCTTCTTTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009787 GO:0009789 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010118 GO:0010185 GO:0010186 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0080134 GO:0090332 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901421 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

151

Amino Acids

16.51

Weight (kDa)

5.03

Isoelectric Point (pI)

56.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	17 - 67	1.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04370 AT3G23220 AT5G43410
fragaria_vesca	FvH4_4g03450 FvH4_4g03450
malus_domestica	MD13G1212700.v1.1 MD16G1216400.v1.1
prunus_persica	Prupe.1G037700_v2.0.a1
pyrus_communis	pycom13g18450 pycom16g18100
rosa_chinensis	RchiOBHm_Chr4g0392451
rosa_laevigata	RLG00000009805
rosa_multiflora	Rmu_co8448865.1_g000001 Rmu_sc0010476.1_g000004 Rmu_sc0037407.1_g000001
rosa_roxburghii	Rroxscaffold_5G00337710
rosa_rugosa	Rorug03G0338900
rosa_samantha	Rh4AG043000 Rh4BG038000 Rh4CG046000 Rh4DG040000
rosa_wichuraiana	Rw4G003360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	182
AccII	CGCG	3 cut(s)	102, 122, 124
AciI	CCGC	4 cut(s)	64, 70, 92, 182
AcoI	YGGCCR	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	174
AfaI	GTAC	2 cut(s)	233, 356
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	217
AluBI	AGCT	5 cut(s)	152, 164, 170, 320, 382
AluI	AGCT	5 cut(s)	152, 164, 170, 320, 382
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	3 cut(s)	89, 161, 382
AseI	ATTAAT	1 cut(s)	428
AspLEI	GCGC	2 cut(s)	122, 124
AsuC2I	CCSGG	2 cut(s)	40, 56
BaeI	ACNNNNGTAYC	2 cut(s)	43, 76
BbvI	GCAGC	3 cut(s)	101, 173, 369
BceAI	ACGGC	1 cut(s)	133
BcnI	CCSGG	2 cut(s)	40, 56
BfaI	CTAG	3 cut(s)	165, 374, 386
BisI	GCNGC	5 cut(s)	71, 90, 162, 183, 383
BlpI	GCTNAGC	1 cut(s)	205
BlsI	GCNGC	5 cut(s)	72, 91, 163, 184, 384
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	2 cut(s)	40, 56
BmrFI	CCNGG	2 cut(s)	40, 56
BmsI	GCATC	3 cut(s)	25, 278, 444
Bpu1102I	GCTNAGC	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	2 cut(s)	40, 56
Bsa29I	ATCGAT	1 cut(s)	397
BsaBI	GATNNNNATC	1 cut(s)	393
BsaJI	CCNNGG	3 cut(s)	39, 55, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	393
BseCI	ATCGAT	1 cut(s)	397
BseDI	CCNNGG	3 cut(s)	39, 55, 74
BseGI	GGATG	2 cut(s)	40, 367
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	311
BsePI	GCGCGC	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	3 cut(s)	101, 173, 369
Bsh1236I	CGCG	3 cut(s)	102, 122, 124
BshFI	GGCC	1 cut(s)	73
BshVI	ATCGAT	1 cut(s)	397
BsiSI	CCGG	2 cut(s)	39, 55
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	394, 398
Bsp1720I	GCTNAGC	1 cut(s)	205
Bsp19I	CCATGG	1 cut(s)	74
Bsp68I	TCGCGA	1 cut(s)	102
BspACI	CCGC	4 cut(s)	64, 70, 92, 182
BspANI	GGCC	1 cut(s)	73
BspDI	ATCGAT	1 cut(s)	397
BspFNI	CGCG	3 cut(s)	102, 122, 124
BspQI	GCTCTTC	1 cut(s)	259
BsrBI	CCGCTC	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	39, 55, 74
BssHII	GCGCGC	1 cut(s)	120
BssMI	GATC	2 cut(s)	394, 398
BssT1I	CCWWGG	1 cut(s)	74
Bst6I	CTCTTC	4 cut(s)	21, 150, 259, 445
BstC8I	GCNNGC	2 cut(s)	122, 318
BstDEI	CTNAG	1 cut(s)	205
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	40, 367
BstFNI	CGCG	3 cut(s)	102, 122, 124
BstHHI	GCGC	2 cut(s)	122, 124
BstKTI	GATC	2 cut(s)	397, 401
BstMBI	GATC	2 cut(s)	394, 398
BstMWI	GCNNNNNNNGC	7 cut(s)	70, 121, 130, 158, 167, 188, 379
BstSCI	CCNGG	2 cut(s)	38, 54
BstUI	CGCG	3 cut(s)	102, 122, 124
BstV1I	GCAGC	3 cut(s)	101, 173, 369
Bsu15I	ATCGAT	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	73
BsuTUI	ATCGAT	1 cut(s)	397
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	40, 367
BtuMI	TCGCGA	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	122, 318
CfoI	GCGC	2 cut(s)	122, 124
ClaI	ATCGAT	1 cut(s)	397
Csp6I	GTAC	2 cut(s)	232, 355
CviAII	CATG	2 cut(s)	22, 75
CviQI	GTAC	2 cut(s)	232, 355
DdeI	CTNAG	1 cut(s)	205
DpnI	GATC	2 cut(s)	396, 400
DpnII	GATC	2 cut(s)	394, 398
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	4 cut(s)	21, 150, 259, 445
EarI	CTCTTC	4 cut(s)	21, 150, 259, 445
Eco130I	CCWWGG	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	25, 78
FaiI	YATR	7 cut(s)	23, 76, 87, 174, 189, 194, 308
FalI	AAGNNNNNCTT	1 cut(s)	424
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	21, 74
Fnu4HI	GCNGC	5 cut(s)	71, 90, 162, 183, 383
FokI	GGATG	2 cut(s)	47, 374
Fsp4HI	GCNGC	5 cut(s)	71, 90, 162, 183, 383
FspBI	CTAG	3 cut(s)	165, 374, 386
GlaI	GCGC	2 cut(s)	121, 123
GluI	GCNGC	5 cut(s)	71, 90, 162, 183, 383
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	2 cut(s)	39, 55
HhaI	GCGC	2 cut(s)	122, 124
Hin1II	CATG	2 cut(s)	25, 78
Hin6I	GCGC	2 cut(s)	120, 122
HinP1I	GCGC	2 cut(s)	120, 122
HinfI	GANTC	3 cut(s)	5, 97, 104
HpaII	CCGG	2 cut(s)	39, 55
Hpy188III	TCNNGA	2 cut(s)	101, 344
HpyAV	CCTTC	3 cut(s)	10, 25, 246
HpyCH4V	TGCA	2 cut(s)	89, 310
HpyF10VI	GCNNNNNNNGC	7 cut(s)	70, 121, 130, 158, 167, 188, 379
HpyF3I	CTNAG	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	25, 78
HspAI	GCGC	2 cut(s)	120, 122
Kzo9I	GATC	2 cut(s)	394, 398
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	3 cut(s)	52, 68, 296
Lsp1109I	GCAGC	3 cut(s)	101, 173, 369
LweI	GCATC	3 cut(s)	25, 278, 444
MaeI	CTAG	3 cut(s)	165, 374, 386
MalI	GATC	2 cut(s)	396, 400
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	2 cut(s)	394, 398
MboII	GAAGA	8 cut(s)	38, 167, 246, 252, 279, 282, 419, 432
MluCI	AATT	1 cut(s)	277
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	3 cut(s)	151, 189, 370
MseI	TTAA	3 cut(s)	144, 428, 451
MspA1I	CMGCKG	2 cut(s)	92, 152
MspI	CCGG	2 cut(s)	39, 55
MspR9I	CCNGG	2 cut(s)	40, 56
MvnI	CGCG	3 cut(s)	102, 122, 124
MwoI	GCNNNNNNNGC	7 cut(s)	70, 121, 130, 158, 167, 188, 379
NciI	CCSGG	2 cut(s)	40, 56
NcoI	CCATGG	1 cut(s)	74
NdeII	GATC	2 cut(s)	394, 398
NlaIII	CATG	2 cut(s)	25, 78
NruI	TCGCGA	1 cut(s)	102
PauI	GCGCGC	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	5 cut(s)	72, 91, 163, 184, 384
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	428
PteI	GCGCGC	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	152
RruI	TCGCGA	1 cut(s)	102
RsaI	GTAC	2 cut(s)	233, 356
RsaNI	GTAC	2 cut(s)	232, 355
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	144, 428, 451
SatI	GCNGC	5 cut(s)	71, 90, 162, 183, 383
Sau3AI	GATC	2 cut(s)	394, 398
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	40, 56
SetI	ASST	5 cut(s)	154, 166, 172, 322, 384
SfaNI	GCATC	3 cut(s)	25, 278, 444
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	4 cut(s)	64, 70, 92, 182
SspMI	CTAG	3 cut(s)	165, 374, 386
StyD4I	CCNGG	2 cut(s)	38, 54
StyI	CCWWGG	1 cut(s)	74
TaqI	TCGA	2 cut(s)	49, 397
TasI	AATT	1 cut(s)	277
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	2 cut(s)	73, 185
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	3 cut(s)	144, 428, 451
Tru9I	TTAA	3 cut(s)	144, 428, 451
TseI	GCWGC	3 cut(s)	89, 161, 382
TspDTI	ATGAA	4 cut(s)	246, 252, 273, 351
VspI	ATTAAT	1 cut(s)	428
XspI	CTAG	3 cut(s)	165, 374, 386
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.