AT1G04560

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012496
Physical Location & Seq
Forward (+)
1244947 .. 1246059
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04560.1

Sequence Viewer

Length: 561 bp
ATGGCGACGACAGTGGGAAGAAACATAGCAGCACCATTGCTGTTCTTGAATCTTGTTATGTACCTGATTGTGCTTGGTTTTGCAAGTTGGTGTCTCAATAAATACATCAACGGCCAAACTAACCACCCAAGTTTTGGAGGCAATGGAGCAACACCGTTCTTCTTGACGTTTTCGATATTGGCGGCTGTGGTAGGAGTAGCGTCGAAGTTGGCCGGAGCAAATCATATTAGGTTTTGGAGGAATGATAGTTTAGCCGCTGCTGGAGCTTCTTCCATCGTTGCATGGGCTATCACAGCTCTTGCCATGGGGTTGGCATGCAAACAAATAAACATAGGAGGATGGAGAGGATGGAGACTGAAGATGATTGAAGCCTTCATTATCATTTTGACGTTCACGCAGCTTCTCTACCTCATGTTGATCCATGCCGGTTCACTCAGCAGCAAATATGGTCCTGGATACAGAGACCAAGACTATGCTACAGGCCAAGCTCATGGTCATGGTCATGTACCACACACTGTGGGAGAGCACAAGGCTGGTGTTGGATCTACCATGGCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

186

Amino Acids

19.85

Weight (kDa)

9.74

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 15 - 143 6.7e-55 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04560
fragaria_vesca FvH4_4g05050 FvH4_4g05050
malus_domestica MD13G1224200.v1.1 MD16G1229000.v1.1
prunus_persica Prupe.1G050900_v2.0.a1 Prupe.1G050900_v2.0.a1
pyrus_communis pycom13g19800
rosa_chinensis RchiOBHm_Chr4g0395971
rosa_laevigata RLG00000009584
rosa_multiflora Rmu_sc0001103.1_g000004
rosa_roxburghii Rroxscaffold_5G00340730
rosa_rugosa Rorug03G0353100
rosa_samantha Rh4AG064300 Rh4AG066300 Rh4BG063000 Rh4CG069400 Rh4DG059500
rosa_wichuraiana Rw4G005190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AciI CCGC 2 cut(s) 182, 255
AclWI GGATC 2 cut(s) 412, 550
AcoI YGGCCR 2 cut(s) 112, 210
AcuI CTGAAG 1 cut(s) 377
AdeI CACNNNGTG 1 cut(s) 517
AfaI GTAC 2 cut(s) 62, 507
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 49, 368
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 4 cut(s) 266, 296, 400, 488
AluI AGCT 4 cut(s) 266, 296, 400, 488
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 3 cut(s) 98, 346, 456
AlwI GGATC 2 cut(s) 412, 550
AoxI GGCC 3 cut(s) 112, 210, 481
ApeKI GCWGC 4 cut(s) 29, 257, 397, 438
AspS9I GGNCC 1 cut(s) 449
AvaII GGWCC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 4 cut(s) 41, 244, 409, 450
BccI CCATC 3 cut(s) 281, 333, 342
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 453
BciVI GTATCC 1 cut(s) 449
BcoDI GTCTC 3 cut(s) 98, 346, 456
BfmI CTRYAG 1 cut(s) 477
BfuI GTATCC 1 cut(s) 449
BisI GCNGC 6 cut(s) 30, 183, 255, 258, 398, 439
BlsI GCNGC 6 cut(s) 31, 184, 256, 259, 399, 440
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmrFI CCNGG 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 303, 549
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 425
Bse3DI GCAATG 2 cut(s) 35, 148
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 303, 549
BseGI GGATG 2 cut(s) 344, 353
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 2 cut(s) 35, 148
BseMII CTCAG 1 cut(s) 448
BseXI GCAGC 4 cut(s) 41, 244, 409, 450
BshFI GGCC 3 cut(s) 114, 212, 483
BsiHKAI GWGCWC 1 cut(s) 528
BsiSI CCGG 2 cut(s) 213, 426
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 3 cut(s) 98, 346, 456
BsnI GGCC 3 cut(s) 114, 212, 483
Bso31I GGTCTC 1 cut(s) 456
Bsp1286I GDGCHC 1 cut(s) 528
Bsp143I GATC 2 cut(s) 417, 542
Bsp19I CCATGG 2 cut(s) 303, 549
BspACI CCGC 2 cut(s) 182, 255
BspANI GGCC 3 cut(s) 114, 212, 483
BspCNI CTCAG 1 cut(s) 447
BspPI GGATC 2 cut(s) 412, 550
BspTNI GGTCTC 1 cut(s) 456
BsrDI GCAATG 2 cut(s) 35, 148
BsrFI RCCGGY 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 2 cut(s) 303, 549
BssMI GATC 2 cut(s) 417, 542
BssT1I CCWWGG 2 cut(s) 303, 549
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 3 cut(s) 13, 156, 517
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 434
BstDSI CCRYGG 2 cut(s) 303, 549
BstF5I GGATG 2 cut(s) 344, 353
BstKTI GATC 2 cut(s) 420, 545
BstMAI GTCTC 3 cut(s) 98, 346, 456
BstMBI GATC 2 cut(s) 417, 542
BstMWI GCNNNNNNNGC 2 cut(s) 263, 293
BstNI CCWGG 1 cut(s) 453
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 477
BstV1I GCAGC 4 cut(s) 41, 244, 409, 450
BstX2I RGATCY 1 cut(s) 542
BstXI CCANNNNNNTGG 2 cut(s) 310, 491
BstYI RGATCY 1 cut(s) 542
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 3 cut(s) 114, 212, 483
BtgI CCRYGG 2 cut(s) 303, 549
BtsCI GGATG 2 cut(s) 344, 353
BtsIMutI CAGTG 2 cut(s) 18, 513
Cac8I GCNNGC 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 1 cut(s) 449
CseI GACGC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 61, 506
CviAII CATG 9 cut(s) 282, 304, 315, 412, 422, 491, 497, 503, 550
CviQI GTAC 2 cut(s) 61, 506
DdeI CTNAG 1 cut(s) 434
DpnI GATC 2 cut(s) 419, 544
DpnII GATC 2 cut(s) 417, 542
DraIII CACNNNGTG 1 cut(s) 517
EaeI YGGCCR 2 cut(s) 112, 210
Eco130I CCWWGG 2 cut(s) 303, 549
Eco31I GGTCTC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 451
EcoT14I CCWWGG 2 cut(s) 303, 549
ErhI CCWWGG 2 cut(s) 303, 549
FaeI CATG 9 cut(s) 285, 307, 318, 415, 425, 494, 500, 506, 553
FatI CATG 9 cut(s) 281, 303, 314, 411, 421, 490, 496, 502, 549
Fnu4HI GCNGC 6 cut(s) 30, 183, 255, 258, 398, 439
FokI GGATG 2 cut(s) 351, 360
Fsp4HI GCNGC 6 cut(s) 30, 183, 255, 258, 398, 439
GluI GCNGC 6 cut(s) 30, 183, 255, 258, 398, 439
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 3 cut(s) 114, 212, 483
HapII CCGG 2 cut(s) 213, 426
HgaI GACGC 1 cut(s) 189
Hin1II CATG 9 cut(s) 285, 307, 318, 415, 425, 494, 500, 506, 553
HinfI GANTC 1 cut(s) 49
HpaII CCGG 2 cut(s) 213, 426
Hpy166II GTNNAC 2 cut(s) 393, 431
Hpy188I TCNGA 1 cut(s) 560
Hpy188III TCNNGA 2 cut(s) 46, 163
Hpy8I GTNNAC 2 cut(s) 393, 431
Hpy99I CGWCG 2 cut(s) 10, 205
HpyAV CCTTC 1 cut(s) 382
HpyCH4III ACNGT 3 cut(s) 13, 156, 517
HpyCH4IV ACGT 2 cut(s) 167, 389
HpyCH4V TGCA 3 cut(s) 83, 281, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 293
HpyF3I CTNAG 1 cut(s) 434
HpySE526I ACGT 2 cut(s) 167, 389
Hsp92II CATG 9 cut(s) 285, 307, 318, 415, 425, 494, 500, 506, 553
Kzo9I GATC 2 cut(s) 417, 542
LmnI GCTCC 3 cut(s) 146, 215, 263
LpnPI CCDG 8 cut(s) 77, 226, 246, 438, 439, 465, 465, 519
Lsp1109I GCAGC 4 cut(s) 41, 244, 409, 450
MaeII ACGT 2 cut(s) 167, 389
MalI GATC 2 cut(s) 419, 544
MboI GATC 2 cut(s) 417, 542
MboII GAAGA 4 cut(s) 30, 151, 261, 370
MflI RGATCY 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 528
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 5 cut(s) 131, 231, 329, 338, 419
MslI CAYNNNNRTG 2 cut(s) 495, 501
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 2 cut(s) 213, 426
MspR9I CCNGG 1 cut(s) 453
MvaI CCWGG 1 cut(s) 453
MwoI GCNNNNNNNGC 2 cut(s) 263, 293
NcoI CCATGG 2 cut(s) 303, 549
NdeII GATC 2 cut(s) 417, 542
NlaIII CATG 9 cut(s) 285, 307, 318, 415, 425, 494, 500, 506, 553
NspI RCATGY 1 cut(s) 318
PaeI GCATGC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 451
PkrI GCNGC 6 cut(s) 31, 184, 256, 259, 399, 440
Psp6I CCWGG 1 cut(s) 451
PspGI CCWGG 1 cut(s) 451
PspPI GGNCC 1 cut(s) 449
PsuI RGATCY 1 cut(s) 542
RsaI GTAC 2 cut(s) 62, 507
RsaNI GTAC 2 cut(s) 61, 506
RseI CAYNNNNRTG 2 cut(s) 495, 501
SatI GCNGC 6 cut(s) 30, 183, 255, 258, 398, 439
Sau3AI GATC 2 cut(s) 417, 542
Sau96I GGNCC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 453
SduI GDGCHC 1 cut(s) 528
SetI ASST 9 cut(s) 66, 170, 233, 268, 298, 392, 402, 411, 490
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 2 cut(s) 495, 501
SphI GCATGC 1 cut(s) 318
SsiI CCGC 2 cut(s) 182, 255
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 2 cut(s) 303, 549
TaaI ACNGT 3 cut(s) 13, 156, 517
TaiI ACGT 2 cut(s) 170, 392
TaqI TCGA 2 cut(s) 173, 203
TauI GCSGC 2 cut(s) 185, 257
TfiI GAWTC 1 cut(s) 49
TscAI CASTG 2 cut(s) 18, 520
TseI GCWGC 4 cut(s) 29, 257, 397, 438
TspDTI ATGAA 1 cut(s) 364
TspRI CASTG 2 cut(s) 18, 520
Van91I CCANNNNNTGG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 449
XceI RCATGY 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.