Prupe.1G050900_v2.0.a1

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012496
Physical Location & Seq
Forward (+)
3576440 .. 3577957
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G050900.2

Sequence Viewer

Length: 543 bp
ATGGCTCAGACAGTGGGAAGGAACGTGGCAGCTCCATTGCTGTTTCTCAACTTGATCATGTATTTTATTGTAGTTGGTTTTGCTAGTTGGTGTCTTAACAAGTTCATCAATGGCCAGACCAACCACCCTAGTTTTGGAGGAAATGGAGCAACAATGTTCTTTCTGATATTCGCCATATTGGCTGGGGTATTGGGCATAGCATCAAAGTTGGCTGGAGCAAACCATATCAGAGCTTGGAGGAGTGACAGCCTAGCTGCAGCAGGATCATCATCAGTTGTGGCATGGGCTCTCACTGCACTAGCCTTTGGGTTGGCATGCAAGCAAATAAGCATTGGAGGATACAGAGGATGGAGGCTGAAGATCTTGGAGGCTTTCATAATAATCTTAGCATTCACTCAGCTTTTGTACATCCTGCTACTTCATGCCGGAGTCTTCAGCAGCAAGTATGGCCCGGGTTACCGCGACACCGACTACCCGGCTACTGGTGTGGATCCAATACACAAGGGCACAGCTGGAGCAGTCCCTGCCACTAGGGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

181

Amino Acids

19.12

Weight (kDa)

9.88

Isoelectric Point (pI)

26.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04560
fragaria_vesca FvH4_4g05050 FvH4_4g05050
malus_domestica MD13G1224200.v1.1 MD16G1229000.v1.1
prunus_persica Prupe.1G050900_v2.0.a1 Prupe.1G050900_v2.0.a1
pyrus_communis pycom13g19800
rosa_chinensis RchiOBHm_Chr4g0395971
rosa_laevigata RLG00000009584
rosa_multiflora Rmu_sc0001103.1_g000004
rosa_roxburghii Rroxscaffold_5G00340730
rosa_rugosa Rorug03G0353100
rosa_samantha Rh4AG064300 Rh4AG066300 Rh4BG063000 Rh4CG069400 Rh4DG059500
rosa_wichuraiana Rw4G005190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 462
AciI CCGC 1 cut(s) 460
AclWI GGATC 3 cut(s) 271, 485, 498
AcoI YGGCCR 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 377, 418
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 2 cut(s) 134, 482
AluBI AGCT 5 cut(s) 32, 233, 254, 400, 512
AluI AGCT 5 cut(s) 32, 233, 254, 400, 512
AlwI GGATC 3 cut(s) 271, 485, 498
AlwNI CAGNNNCTG 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 451
AoxI GGCC 2 cut(s) 112, 448
ApeKI GCWGC 4 cut(s) 29, 254, 257, 438
AspS9I GGNCC 1 cut(s) 449
AsuC2I CCSGG 3 cut(s) 452, 453, 476
AvaI CYCGRG 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 509
BalI TGGCCA 1 cut(s) 114
BamHI GGATCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 424
BbvI GCAGC 4 cut(s) 41, 241, 269, 450
BccI CCATC 1 cut(s) 342
BciVI GTATCC 1 cut(s) 332
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 3 cut(s) 452, 453, 476
BfaI CTAG 5 cut(s) 84, 129, 251, 299, 531
BfmI CTRYAG 1 cut(s) 255
BfuI GTATCC 1 cut(s) 332
BglI GCCNNNNNGGC 1 cut(s) 179
BglII AGATCT 1 cut(s) 360
BisI GCNGC 4 cut(s) 30, 255, 258, 439
BlsI GCNGC 4 cut(s) 31, 256, 259, 440
Bme1390I CCNGG 3 cut(s) 452, 453, 476
BmeT110I CYCGRG 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 3 cut(s) 452, 453, 476
BmsI GCATC 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 424
BpmI CTGGAG 2 cut(s) 234, 534
BpuMI CCSGG 3 cut(s) 452, 453, 476
BsaBI GATNNNNATC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 451
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 482
Bse1I ACTGG 1 cut(s) 487
Bse3DI GCAATG 1 cut(s) 35
Bse8I GATNNNNATC 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 2 cut(s) 353, 408
BseJI GATNNNNATC 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 134, 482
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 2 cut(s) 20, 410
BseNI ACTGG 1 cut(s) 487
BseRI GAGGAG 1 cut(s) 253
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 4 cut(s) 41, 241, 269, 450
BseYI CCCAGC 1 cut(s) 182
BsgI GTGCAG 1 cut(s) 279
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 2 cut(s) 114, 450
BsiHKCI CYCGRG 1 cut(s) 451
BsiSI CCGG 3 cut(s) 426, 452, 476
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 134, 482
BsmFI GGGAC 1 cut(s) 506
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 2 cut(s) 114, 450
BsoBI CYCGRG 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 289, 509
Bsp1407I TGTACA 1 cut(s) 405
Bsp143I GATC 4 cut(s) 54, 263, 360, 490
BspACI CCGC 1 cut(s) 460
BspANI GGCC 2 cut(s) 114, 450
BspCNI CTCAG 2 cut(s) 19, 409
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 492
BspMAI CTGCAG 1 cut(s) 259
BspPI GGATC 3 cut(s) 271, 485, 498
BsrDI GCAATG 1 cut(s) 35
BsrGI TGTACA 1 cut(s) 405
BsrI ACTGG 1 cut(s) 487
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 4 cut(s) 54, 263, 360, 490
Bst4CI ACNGT 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 524
BstAUI TGTACA 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 316, 320
BstDEI CTNAG 3 cut(s) 6, 385, 396
BstEII GGTNACC 1 cut(s) 455
BstF5I GGATG 2 cut(s) 353, 408
BstFNI CGCG 1 cut(s) 462
BstKTI GATC 4 cut(s) 57, 266, 363, 493
BstMBI GATC 4 cut(s) 54, 263, 360, 490
BstMWI GCNNNNNNNGC 4 cut(s) 179, 293, 447, 524
BstNSI RCATGY 1 cut(s) 318
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 3 cut(s) 450, 451, 474
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 509
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 4 cut(s) 41, 241, 269, 450
BstV2I GAAGAC 1 cut(s) 424
BstX2I RGATCY 2 cut(s) 360, 490
BstYI RGATCY 2 cut(s) 360, 490
BsuI GTATCC 1 cut(s) 332
BsuRI GGCC 2 cut(s) 114, 450
BtsCI GGATG 2 cut(s) 353, 408
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 18, 291
Cac8I GCNNGC 2 cut(s) 316, 320
CaiI CAGNNNCTG 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 449
Cfr9I CCCGGG 1 cut(s) 451
Csp6I GTAC 1 cut(s) 406
CspCI CAANNNNNGTGG 1 cut(s) 517
CviAII CATG 4 cut(s) 58, 282, 315, 422
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 3 cut(s) 6, 385, 396
DpnI GATC 4 cut(s) 56, 265, 362, 492
DpnII GATC 4 cut(s) 54, 263, 360, 490
EaeI YGGCCR 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 289
Eco57I CTGAAG 2 cut(s) 377, 418
Eco88I CYCGRG 1 cut(s) 451
Eco91I GGTNACC 1 cut(s) 455
EcoO65I GGTNACC 1 cut(s) 455
EcoT38I GRGCYC 1 cut(s) 289
FaeI CATG 4 cut(s) 61, 285, 318, 425
FaiI YATR 9 cut(s) 59, 176, 197, 225, 283, 316, 377, 423, 447
FaqI GGGAC 1 cut(s) 506
FatI CATG 4 cut(s) 57, 281, 314, 421
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 4 cut(s) 30, 255, 258, 439
FokI GGATG 2 cut(s) 360, 395
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 4 cut(s) 30, 255, 258, 439
FspBI CTAG 5 cut(s) 84, 129, 251, 299, 531
GluI GCNGC 4 cut(s) 30, 255, 258, 439
GsaI CCCAGC 1 cut(s) 186
GsuI CTGGAG 2 cut(s) 234, 534
HaeIII GGCC 2 cut(s) 114, 450
HapII CCGG 3 cut(s) 426, 452, 476
Hin1II CATG 4 cut(s) 61, 285, 318, 425
HinfI GANTC 1 cut(s) 429
HpaII CCGG 3 cut(s) 426, 452, 476
Hpy188I TCNGA 3 cut(s) 9, 165, 230
HpyAV CCTTC 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 3 cut(s) 257, 296, 318
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 293, 447, 524
HpyF3I CTNAG 3 cut(s) 6, 385, 396
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 4 cut(s) 61, 285, 318, 425
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 4 cut(s) 54, 263, 360, 490
LmnI GCTCC 4 cut(s) 37, 146, 215, 515
Lsp1109I GCAGC 4 cut(s) 41, 241, 269, 450
LweI GCATC 1 cut(s) 209
MaeI CTAG 5 cut(s) 84, 129, 251, 299, 531
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 242, 455
MalI GATC 4 cut(s) 56, 265, 362, 492
MboI GATC 4 cut(s) 54, 263, 360, 490
MboII GAAGA 2 cut(s) 370, 424
MflI RGATCY 2 cut(s) 360, 490
MhlI GDGCHC 2 cut(s) 289, 509
MlsI TGGCCA 1 cut(s) 114
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 1 cut(s) 438
MnlI CCTC 6 cut(s) 131, 231, 329, 338, 345, 361
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 3 cut(s) 426, 452, 476
MspR9I CCNGG 3 cut(s) 452, 453, 476
Mva1269I GAATGC 1 cut(s) 389
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 4 cut(s) 179, 293, 447, 524
NciI CCSGG 3 cut(s) 452, 453, 476
NdeII GATC 4 cut(s) 54, 263, 360, 490
NlaIII CATG 4 cut(s) 61, 285, 318, 425
NlaIV GGNNCC 1 cut(s) 492
NmuCI GTSAC 1 cut(s) 242
NspI RCATGY 1 cut(s) 318
PaeI GCATGC 1 cut(s) 318
PctI GAATGC 1 cut(s) 389
PkrI GCNGC 4 cut(s) 31, 256, 259, 440
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PspEI GGTNACC 1 cut(s) 455
PspFI CCCAGC 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 1 cut(s) 449
PstI CTGCAG 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 2 cut(s) 360, 490
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 4 cut(s) 30, 255, 258, 439
Sau3AI GATC 4 cut(s) 54, 263, 360, 490
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 438
ScrFI CCNGG 3 cut(s) 452, 453, 476
SduI GDGCHC 2 cut(s) 289, 509
SetI ASST 6 cut(s) 27, 34, 235, 256, 402, 514
SfaNI GCATC 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 255
SmaI CCCGGG 1 cut(s) 453
SphI GCATGC 1 cut(s) 318
SsiI CCGC 1 cut(s) 460
SspMI CTAG 5 cut(s) 84, 129, 251, 299, 531
StyD4I CCNGG 3 cut(s) 450, 451, 474
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 27
TatI WGTACW 1 cut(s) 405
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 2 cut(s) 18, 298
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 4 cut(s) 29, 254, 257, 438
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 94, 364, 410
TspMI CCCGGG 1 cut(s) 451
TspRI CASTG 2 cut(s) 18, 298
XceI RCATGY 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XmaI CCCGGG 1 cut(s) 451
XspI CTAG 5 cut(s) 84, 129, 251, 299, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.