Rh4BG063000

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012496
Physical Location & Seq
Forward (+)
11261126 .. 11262646
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG063000.1

Sequence Viewer

Length: 390 bp
ATGTTCTTTCTGATCTTCTCCATAATGGCTGGTGTGATGGGAATAGCGTCTAAGTTGGCTGGAGCAGGTCATCTCAGAGCTTGGAGGAGTGACAGTCTAGCTGCAGCCGGAGTTTCATCAATTGTGGCTTGGGCTCTCACTGCACTAGCCTTTGGATTGGCATGCAAGCAAATCAGCATTGGAGGACCCAGGGGATGGAGGCTGAGGGTTTTGGAGGCTTTTATAATAATCTTGACATTCACCCAGCTTTTGTATCTCTTGCTACTTCATGCTGGTATCTTCAGCAGCAAGTATGGTCCGGGTTACCGCGACACCGACTACCCTGCTGCTCCCGGTGTTGATCCAATCCCCAAGGGCGGAACTGGAGTCCCTGCTTCTAGGGTGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

129

Amino Acids

13.58

Weight (kDa)

10.0

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 1 - 92 1.4e-39 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04560
fragaria_vesca FvH4_4g05050 FvH4_4g05050
malus_domestica MD13G1224200.v1.1 MD16G1229000.v1.1
prunus_persica Prupe.1G050900_v2.0.a1 Prupe.1G050900_v2.0.a1
pyrus_communis pycom13g19800
rosa_chinensis RchiOBHm_Chr4g0395971
rosa_laevigata RLG00000009584
rosa_multiflora Rmu_sc0001103.1_g000004
rosa_roxburghii Rroxscaffold_5G00340730
rosa_rugosa Rorug03G0353100
rosa_samantha Rh4AG064300 Rh4AG066300 Rh4BG063000 Rh4CG069400 Rh4DG059500
rosa_wichuraiana Rw4G005190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 195
AccII CGCG 1 cut(s) 309
AciI CCGC 2 cut(s) 307, 357
AclWI GGATC 1 cut(s) 335
AcuI CTGAAG 1 cut(s) 265
AfiI CCNNNNNNNGG 2 cut(s) 195, 356
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 3 cut(s) 80, 101, 247
AluI AGCT 3 cut(s) 80, 101, 247
AlwI GGATC 1 cut(s) 335
ApeKI GCWGC 4 cut(s) 101, 104, 285, 326
AspS9I GGNCC 2 cut(s) 185, 296
AsuC2I CCSGG 2 cut(s) 300, 333
AsuHPI GGTGA 1 cut(s) 232
AvaII GGWCC 2 cut(s) 185, 296
BanII GRGCYC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 203
BbvI GCAGC 4 cut(s) 88, 116, 297, 313
BccI CCATC 2 cut(s) 31, 189
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 1 cut(s) 190
BcnI CCSGG 2 cut(s) 300, 333
BfaI CTAG 3 cut(s) 98, 146, 378
BfmI CTRYAG 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 56
BisI GCNGC 4 cut(s) 102, 105, 286, 327
BlsI GCNGC 4 cut(s) 103, 106, 287, 328
Bme1390I CCNGG 3 cut(s) 190, 300, 333
Bme18I GGWCC 2 cut(s) 185, 296
BmgT120I GGNCC 2 cut(s) 185, 296
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 3 cut(s) 190, 300, 333
BpmI CTGGAG 2 cut(s) 81, 384
Bpu10I CCTNAGC 1 cut(s) 203
BpuMI CCSGG 2 cut(s) 300, 333
BsaJI CCNNGG 3 cut(s) 188, 189, 351
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 356
Bse1I ACTGG 1 cut(s) 367
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 3 cut(s) 188, 189, 351
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 2 cut(s) 195, 356
BseMII CTCAG 2 cut(s) 88, 194
BseNI ACTGG 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 4 cut(s) 88, 116, 297, 313
BseYI CCCAGC 1 cut(s) 243
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 309
BsiSI CCGG 3 cut(s) 108, 299, 333
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 195, 356
BsmFI GGGAC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 12, 340
BspACI CCGC 2 cut(s) 307, 357
BspCNI CTCAG 2 cut(s) 87, 195
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 367
BssECI CCNNGG 3 cut(s) 188, 189, 351
BssMI GATC 2 cut(s) 12, 340
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 163, 167
BstDEI CTNAG 3 cut(s) 51, 74, 203
BstEII GGTNACC 1 cut(s) 302
BstF5I GGATG 1 cut(s) 200
BstFNI CGCG 1 cut(s) 309
BstKTI GATC 2 cut(s) 15, 343
BstMBI GATC 2 cut(s) 12, 340
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 165
BstPI GGTNACC 1 cut(s) 302
BstSCI CCNGG 3 cut(s) 188, 298, 331
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 4 cut(s) 88, 116, 297, 313
BtsCI GGATG 1 cut(s) 200
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 163, 167
Cfr13I GGNCC 2 cut(s) 185, 296
CseI GACGC 1 cut(s) 36
CviAII CATG 2 cut(s) 162, 269
DdeI CTNAG 3 cut(s) 51, 74, 203
DpnI GATC 2 cut(s) 14, 342
DpnII GATC 2 cut(s) 12, 340
EciI GGCGGA 1 cut(s) 372
Eco130I CCWWGG 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 185, 296
Eco57I CTGAAG 1 cut(s) 265
Eco91I GGTNACC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 165, 272
FaiI YATR 5 cut(s) 23, 163, 224, 270, 294
FaqI GGGAC 1 cut(s) 353
FatI CATG 2 cut(s) 161, 268
Fnu4HI GCNGC 4 cut(s) 102, 105, 286, 327
FokI GGATG 1 cut(s) 207
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 4 cut(s) 102, 105, 286, 327
FspBI CTAG 3 cut(s) 98, 146, 378
GluI GCNGC 4 cut(s) 102, 105, 286, 327
GsaI CCCAGC 1 cut(s) 247
GsuI CTGGAG 2 cut(s) 81, 384
HapII CCGG 3 cut(s) 108, 299, 333
HgaI GACGC 1 cut(s) 36
Hin1II CATG 2 cut(s) 165, 272
HinfI GANTC 1 cut(s) 366
HpaII CCGG 3 cut(s) 108, 299, 333
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 12, 77
Hpy188III TCNNGA 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 3 cut(s) 104, 143, 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 3 cut(s) 51, 74, 203
Hsp92II CATG 2 cut(s) 165, 272
Kzo9I GATC 2 cut(s) 12, 340
LmnI GCTCC 2 cut(s) 62, 334
Lsp1109I GCAGC 4 cut(s) 88, 116, 297, 313
MaeI CTAG 3 cut(s) 98, 146, 378
MaeIII GTNAC 2 cut(s) 89, 302
MalI GATC 2 cut(s) 14, 342
MboI GATC 2 cut(s) 12, 340
MboII GAAGA 2 cut(s) 7, 271
MfeI CAATTG 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 1 cut(s) 120
MlyI GAGTC 1 cut(s) 375
MnlI CCTC 5 cut(s) 78, 176, 192, 198, 208
MspI CCGG 3 cut(s) 108, 299, 333
MspR9I CCNGG 3 cut(s) 190, 300, 333
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 190
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 2 cut(s) 300, 333
NdeII GATC 2 cut(s) 12, 340
NlaIII CATG 2 cut(s) 165, 272
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 1 cut(s) 89
NspI RCATGY 1 cut(s) 165
PaeI GCATGC 1 cut(s) 165
PasI CCCWGGG 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 195
PkrI GCNGC 4 cut(s) 103, 106, 287, 328
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PpuMI RGGWCCY 1 cut(s) 185
PsiI TTATAA 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 188
PspEI GGTNACC 1 cut(s) 302
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 185, 296
PspPPI RGGWCCY 1 cut(s) 185
PstI CTGCAG 1 cut(s) 106
SatI GCNGC 4 cut(s) 102, 105, 286, 327
Sau3AI GATC 2 cut(s) 12, 340
Sau96I GGNCC 2 cut(s) 185, 296
SchI GAGTC 1 cut(s) 375
ScrFI CCNGG 3 cut(s) 190, 300, 333
SduI GDGCHC 1 cut(s) 136
SetI ASST 4 cut(s) 70, 82, 103, 249
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 2 cut(s) 185, 296
SphI GCATGC 1 cut(s) 165
Sse9I AATT 1 cut(s) 120
SsiI CCGC 2 cut(s) 307, 357
SspMI CTAG 3 cut(s) 98, 146, 378
StyD4I CCNGG 3 cut(s) 188, 298, 331
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 95
TasI AATT 1 cut(s) 120
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 4 cut(s) 101, 104, 285, 326
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 105, 257
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 195
VpaK11BI GGWCC 2 cut(s) 185, 296
XceI RCATGY 1 cut(s) 165
XspI CTAG 3 cut(s) 98, 146, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.