RLG00000009584

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012496
Physical Location & Seq
Reverse (-)
54930942 .. 54931946
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009584

Sequence Viewer

Length: 543 bp
ATGGCTCAGACGGTGGGAAGGAACGTAGCAGCTCCATTGCTGTTTATCAACTTGATCATGTACTTGATTGTAGTGGGATTTGCTAGTTGGTGCCTTAACAGGTTCATCAATGGCCAGACCAACCATCCAAGTTTTGGAGGAAATGGTGCAACAATGTTCTTTCTAATCTTCTCCATATTGGCTGGTGTGCTGGGAATAGCGTCGAAGTTGGCTGGAGCAGGTCATCTCAGAGCTTGGAGGAGTGACAGTCTCGCTGCAGCAGGATCTTCATCAATTGTGGCCTGGGCTCTCACAGCACTAGCATTGGGATTGGCATGCAAACAAATCAACATTGGAGGACACAGGGGATGGAGGCTGAGGGTTTTGGAGGGTTTTATTATAGTCTTGACATTCACTCAGCTTTTGTACCTCGTGCTACTTCATGCTGGTATCTTCAGCAGCAAGTATGGTCCGGGTTACCGCGACACTGACTACCCTGCTGCTCCCGGTGTCGATCCAATCCAGAAGGGCGGAACTGGAGTCCCTGCTTCTAGGGTGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

181

Amino Acids

19.03

Weight (kDa)

10.1

Isoelectric Point (pI)

26.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 15 - 143 4e-53 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04560
fragaria_vesca FvH4_4g05050 FvH4_4g05050
malus_domestica MD13G1224200.v1.1 MD16G1229000.v1.1
prunus_persica Prupe.1G050900_v2.0.a1 Prupe.1G050900_v2.0.a1
pyrus_communis pycom13g19800
rosa_chinensis RchiOBHm_Chr4g0395971
rosa_laevigata RLG00000009584
rosa_multiflora Rmu_sc0001103.1_g000004
rosa_roxburghii Rroxscaffold_5G00340730
rosa_rugosa Rorug03G0353100
rosa_samantha Rh4AG064300 Rh4AG066300 Rh4BG063000 Rh4CG069400 Rh4DG059500
rosa_wichuraiana Rw4G005190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 90
AccB7I CCANNNNNTGG 1 cut(s) 134
AccII CGCG 1 cut(s) 462
AciI CCGC 2 cut(s) 460, 510
AclWI GGATC 2 cut(s) 271, 488
AcoI YGGCCR 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 418
AfaI GTAC 2 cut(s) 62, 407
AfiI CCNNNNNNNGG 1 cut(s) 134
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 3 cut(s) 32, 233, 400
AluI AGCT 3 cut(s) 32, 233, 400
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 2 cut(s) 271, 488
AoxI GGCC 2 cut(s) 112, 279
ApeKI GCWGC 5 cut(s) 29, 254, 257, 438, 479
AspS9I GGNCC 1 cut(s) 449
AsuC2I CCSGG 2 cut(s) 453, 486
AvaII GGWCC 1 cut(s) 449
BalI TGGCCA 1 cut(s) 114
BanI GGYRCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 289
BauI CACGAG 1 cut(s) 410
BbvCI CCTCAGC 1 cut(s) 356
BbvI GCAGC 5 cut(s) 41, 241, 269, 450, 466
BccI CCATC 2 cut(s) 132, 342
BciT130I CCWGG 1 cut(s) 283
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 2 cut(s) 453, 486
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 3 cut(s) 84, 299, 531
BfmI CTRYAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 209
BisI GCNGC 5 cut(s) 30, 255, 258, 439, 480
BlsI GCNGC 5 cut(s) 31, 256, 259, 440, 481
Bme1390I CCNGG 3 cut(s) 283, 453, 486
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 3 cut(s) 283, 453, 486
BpmI CTGGAG 2 cut(s) 234, 537
Bpu10I CCTNAGC 1 cut(s) 356
BpuMI CCSGG 2 cut(s) 453, 486
BsaBI GATNNNNATC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 35
Bse8I GATNNNNATC 1 cut(s) 268
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 2 cut(s) 124, 353
BseJI GATNNNNATC 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 4 cut(s) 20, 241, 347, 410
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 253
BseXI GCAGC 5 cut(s) 41, 241, 269, 450, 466
BseYI CCCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 2 cut(s) 114, 281
BshNI GGYRCC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 452, 486
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 2 cut(s) 114, 281
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 3 cut(s) 54, 263, 493
BspACI CCGC 2 cut(s) 460, 510
BspANI GGCC 2 cut(s) 114, 281
BspCNI CTCAG 4 cut(s) 19, 240, 348, 409
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 2 cut(s) 271, 488
BspT107I GGYRCC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 35
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 3 cut(s) 54, 263, 493
BssSI CACGAG 1 cut(s) 410
Bst2BI CACGAG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 13, 248
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 4 cut(s) 6, 227, 356, 396
BstEII GGTNACC 1 cut(s) 455
BstF5I GGATG 2 cut(s) 124, 353
BstFNI CGCG 1 cut(s) 462
BstKTI GATC 3 cut(s) 57, 266, 496
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 3 cut(s) 54, 263, 493
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 318
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 3 cut(s) 281, 451, 484
BstSFI CTRYAG 1 cut(s) 255
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 5 cut(s) 41, 241, 269, 450, 466
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 2 cut(s) 114, 281
BtsCI GGATG 2 cut(s) 124, 353
BtsIMutI CAGTG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 449
CseI GACGC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 61, 406
CviAII CATG 3 cut(s) 58, 315, 422
CviQI GTAC 2 cut(s) 61, 406
DdeI CTNAG 4 cut(s) 6, 227, 356, 396
DpnI GATC 3 cut(s) 56, 265, 495
DpnII GATC 3 cut(s) 54, 263, 493
EaeI YGGCCR 1 cut(s) 112
EciI GGCGGA 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 418
Eco91I GGTNACC 1 cut(s) 455
EcoO65I GGTNACC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 289
FaeI CATG 3 cut(s) 61, 318, 425
FaiI YATR 6 cut(s) 59, 176, 316, 380, 423, 447
FaqI GGGAC 1 cut(s) 506
FatI CATG 3 cut(s) 57, 314, 421
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 5 cut(s) 30, 255, 258, 439, 480
FokI GGATG 2 cut(s) 111, 360
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 5 cut(s) 30, 255, 258, 439, 480
FspBI CTAG 3 cut(s) 84, 299, 531
GluI GCNGC 5 cut(s) 30, 255, 258, 439, 480
GsaI CCCAGC 1 cut(s) 194
GsuI CTGGAG 2 cut(s) 234, 537
HaeIII GGCC 2 cut(s) 114, 281
HapII CCGG 2 cut(s) 452, 486
HgaI GACGC 1 cut(s) 189
Hin1II CATG 3 cut(s) 61, 318, 425
HinfI GANTC 1 cut(s) 519
HpaII CCGG 2 cut(s) 452, 486
Hpy188I TCNGA 2 cut(s) 9, 230
Hpy188III TCNNGA 2 cut(s) 385, 502
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 12, 499
HpyCH4III ACNGT 2 cut(s) 13, 248
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 3 cut(s) 149, 257, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 4 cut(s) 6, 227, 356, 396
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 3 cut(s) 61, 318, 425
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 3 cut(s) 54, 263, 493
LmnI GCTCC 3 cut(s) 37, 215, 487
Lsp1109I GCAGC 5 cut(s) 41, 241, 269, 450, 466
MaeI CTAG 3 cut(s) 84, 299, 531
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 242, 455
MalI GATC 3 cut(s) 56, 265, 495
MboI GATC 3 cut(s) 54, 263, 493
MboII GAAGA 3 cut(s) 160, 258, 424
MfeI CAATTG 1 cut(s) 273
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 1 cut(s) 273
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 1 cut(s) 528
MnlI CCTC 7 cut(s) 131, 231, 329, 345, 351, 361, 419
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 114
MspI CCGG 2 cut(s) 452, 486
MspR9I CCNGG 3 cut(s) 283, 453, 486
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 1 cut(s) 293
NciI CCSGG 2 cut(s) 453, 486
NdeII GATC 3 cut(s) 54, 263, 493
NlaIII CATG 3 cut(s) 61, 318, 425
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 242
NspI RCATGY 1 cut(s) 318
PaeI GCATGC 1 cut(s) 318
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 5 cut(s) 31, 256, 259, 440, 481
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 281
PspEI GGTNACC 1 cut(s) 455
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 449
PstI CTGCAG 1 cut(s) 259
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 2 cut(s) 62, 407
RsaNI GTAC 2 cut(s) 61, 406
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 5 cut(s) 30, 255, 258, 439, 480
Sau3AI GATC 3 cut(s) 54, 263, 493
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 528
ScrFI CCNGG 3 cut(s) 283, 453, 486
SduI GDGCHC 1 cut(s) 289
SetI ASST 7 cut(s) 27, 34, 104, 223, 235, 402, 411
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 449
SphI GCATGC 1 cut(s) 318
Sse9I AATT 1 cut(s) 273
SsiI CCGC 2 cut(s) 460, 510
SspMI CTAG 3 cut(s) 84, 299, 531
StyD4I CCNGG 3 cut(s) 281, 451, 484
TaaI ACNGT 2 cut(s) 13, 248
TaiI ACGT 1 cut(s) 27
TaqI TCGA 2 cut(s) 203, 492
TasI AATT 1 cut(s) 273
TatI WGTACW 1 cut(s) 60
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 5 cut(s) 29, 254, 257, 438, 479
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 94, 258, 410
TspRI CASTG 1 cut(s) 472
Van91I CCANNNNNTGG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 449
XceI RCATGY 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XspI CTAG 3 cut(s) 84, 299, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.