RchiOBHm_Chr4g0395971

AWPM-19-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012496
Physical Location & Seq
Forward (+)
11982763 .. 11983823
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36836

Sequence Viewer

Length: 543 bp
ATGGCTCAGACGGTGGGAAGGAACGTAGCAGCTCCATTGCTGTTTATCAACTTGATCATGTACTTGATCGTAGTGGGATTTGCTAGTTGGTGCCTTAACAAGTTCATCAATGGCCAGACCAACCACCCAAGTTTTGGAGGAAATGGTGCAACAATGTTCTTTCTGATCTTCTCCATATTGGCTGGTGTGATGGGAATAGCGTCTAAGTTGGCTGGAGCAGGTCATCTCAGAGCTTGGAGGAGTGACAGTCTAGCTGCAGCCGGAGTTTCATCAATTGTGGCTTGGGCTCTCACTGCACTAGCCTTTGGATTGGCATGCAAGCAAATCAGCATTGGAGGACACAGGGGATGGAGGCTGAGGGTTTTGGAGGCTTTTATAATAATCTTGACATTCACCCAGCTTTTGTATCTCTTGCTACTTCATGCTGGTATCTTCAGCAGCAAGTATGGTCCGGGTTACCGCGACACCGACTACCCTGCTGCTCCCGGTGTCGATCCAATCCCCAAGGGCGGAACTGGAGTCCCTGCTTCTAGGGTGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AWPM-19

Protein Analysis

180

Amino Acids

19.05

Weight (kDa)

10.02

Isoelectric Point (pI)

26.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AWPM-19 PF05512 15 - 143 3.1e-53 AWPM-19-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012496)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04560
fragaria_vesca FvH4_4g05050 FvH4_4g05050
malus_domestica MD13G1224200.v1.1 MD16G1229000.v1.1
prunus_persica Prupe.1G050900_v2.0.a1 Prupe.1G050900_v2.0.a1
pyrus_communis pycom13g19800
rosa_chinensis RchiOBHm_Chr4g0395971
rosa_laevigata RLG00000009584
rosa_multiflora Rmu_sc0001103.1_g000004
rosa_roxburghii Rroxscaffold_5G00340730
rosa_rugosa Rorug03G0353100
rosa_samantha Rh4AG064300 Rh4AG066300 Rh4BG063000 Rh4CG069400 Rh4DG059500
rosa_wichuraiana Rw4G005190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
Acc36I ACCTGC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 90
AccB7I CCANNNNNTGG 1 cut(s) 134
AccII CGCG 1 cut(s) 462
AciI CCGC 2 cut(s) 460, 510
AclWI GGATC 1 cut(s) 488
AcoI YGGCCR 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 418
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 134, 509
AluBI AGCT 4 cut(s) 32, 233, 254, 400
AluI AGCT 4 cut(s) 32, 233, 254, 400
AlwI GGATC 1 cut(s) 488
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 5 cut(s) 29, 254, 257, 438, 479
AspS9I GGNCC 1 cut(s) 449
AsuC2I CCSGG 2 cut(s) 453, 486
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 1 cut(s) 449
BalI TGGCCA 1 cut(s) 114
BanI GGYRCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 289
BbvCI CCTCAGC 1 cut(s) 356
BbvI GCAGC 5 cut(s) 41, 241, 269, 450, 466
BccI CCATC 2 cut(s) 184, 342
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BclI TGATCA 1 cut(s) 54
BcnI CCSGG 2 cut(s) 453, 486
BfaI CTAG 4 cut(s) 84, 251, 299, 531
BfmI CTRYAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 209
BisI GCNGC 5 cut(s) 30, 255, 258, 439, 480
BlsI GCNGC 5 cut(s) 31, 256, 259, 440, 481
Bme1390I CCNGG 2 cut(s) 453, 486
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 2 cut(s) 453, 486
BpmI CTGGAG 2 cut(s) 234, 537
Bpu10I CCTNAGC 1 cut(s) 356
BpuMI CCSGG 2 cut(s) 453, 486
BsaJI CCNNGG 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 509
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 2 cut(s) 134, 509
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 3 cut(s) 20, 241, 347
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 253
BseXI GCAGC 5 cut(s) 41, 241, 269, 450, 466
BseYI CCCAGC 1 cut(s) 396
BsgI GTGCAG 1 cut(s) 279
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 90
BsiSI CCGG 3 cut(s) 261, 452, 486
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 134, 509
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 4 cut(s) 54, 66, 165, 493
BspACI CCGC 2 cut(s) 460, 510
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 3 cut(s) 19, 240, 348
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 35
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 4 cut(s) 54, 66, 165, 493
BssT1I CCWWGG 1 cut(s) 504
Bst4CI ACNGT 2 cut(s) 13, 248
BstC8I GCNNGC 2 cut(s) 316, 320
BstDEI CTNAG 4 cut(s) 6, 204, 227, 356
BstEII GGTNACC 1 cut(s) 455
BstF5I GGATG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 462
BstKTI GATC 4 cut(s) 57, 69, 168, 496
BstMBI GATC 4 cut(s) 54, 66, 165, 493
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 318
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 451, 484
BstSFI CTRYAG 1 cut(s) 255
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 5 cut(s) 41, 241, 269, 450, 466
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 353
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 2 cut(s) 316, 320
Cfr13I GGNCC 1 cut(s) 449
CseI GACGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 61
CviAII CATG 3 cut(s) 58, 315, 422
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 4 cut(s) 6, 204, 227, 356
DpnI GATC 4 cut(s) 56, 68, 167, 495
DpnII GATC 4 cut(s) 54, 66, 165, 493
EaeI YGGCCR 1 cut(s) 112
EciI GGCGGA 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 418
Eco91I GGTNACC 1 cut(s) 455
EcoO65I GGTNACC 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 3 cut(s) 61, 318, 425
FaiI YATR 6 cut(s) 59, 176, 316, 377, 423, 447
FaqI GGGAC 1 cut(s) 506
FatI CATG 3 cut(s) 57, 314, 421
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 5 cut(s) 30, 255, 258, 439, 480
FokI GGATG 1 cut(s) 360
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 5 cut(s) 30, 255, 258, 439, 480
FspBI CTAG 4 cut(s) 84, 251, 299, 531
GluI GCNGC 5 cut(s) 30, 255, 258, 439, 480
GsaI CCCAGC 1 cut(s) 400
GsuI CTGGAG 2 cut(s) 234, 537
HaeIII GGCC 1 cut(s) 114
HapII CCGG 3 cut(s) 261, 452, 486
HgaI GACGC 1 cut(s) 189
Hin1II CATG 3 cut(s) 61, 318, 425
HinfI GANTC 1 cut(s) 519
HpaII CCGG 3 cut(s) 261, 452, 486
HphI GGTGA 1 cut(s) 385
Hpy188I TCNGA 3 cut(s) 9, 165, 230
Hpy188III TCNNGA 1 cut(s) 385
HpyAV CCTTC 1 cut(s) 12
HpyCH4III ACNGT 2 cut(s) 13, 248
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 4 cut(s) 149, 257, 296, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 4 cut(s) 6, 204, 227, 356
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 3 cut(s) 61, 318, 425
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 4 cut(s) 54, 66, 165, 493
LmnI GCTCC 3 cut(s) 37, 215, 487
Lsp1109I GCAGC 5 cut(s) 41, 241, 269, 450, 466
MaeI CTAG 4 cut(s) 84, 251, 299, 531
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 242, 455
MalI GATC 4 cut(s) 56, 68, 167, 495
MboI GATC 4 cut(s) 54, 66, 165, 493
MboII GAAGA 2 cut(s) 160, 424
MfeI CAATTG 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 1 cut(s) 273
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 1 cut(s) 528
MnlI CCTC 6 cut(s) 131, 231, 329, 345, 351, 361
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 114
MspI CCGG 3 cut(s) 261, 452, 486
MspR9I CCNGG 2 cut(s) 453, 486
MunI CAATTG 1 cut(s) 273
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 1 cut(s) 293
NciI CCSGG 2 cut(s) 453, 486
NdeII GATC 4 cut(s) 54, 66, 165, 493
NlaIII CATG 3 cut(s) 61, 318, 425
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 242
NspI RCATGY 1 cut(s) 318
PaeI GCATGC 1 cut(s) 318
PflMI CCANNNNNTGG 1 cut(s) 134
PkrI GCNGC 5 cut(s) 31, 256, 259, 440, 481
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
PsiI TTATAA 1 cut(s) 377
PspEI GGTNACC 1 cut(s) 455
PspFI CCCAGC 1 cut(s) 396
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 449
PstI CTGCAG 1 cut(s) 259
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 5 cut(s) 30, 255, 258, 439, 480
Sau3AI GATC 4 cut(s) 54, 66, 165, 493
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 528
ScrFI CCNGG 2 cut(s) 453, 486
SduI GDGCHC 1 cut(s) 289
SetI ASST 6 cut(s) 27, 34, 223, 235, 256, 402
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 449
SphI GCATGC 1 cut(s) 318
Sse9I AATT 1 cut(s) 273
SsiI CCGC 2 cut(s) 460, 510
SspMI CTAG 4 cut(s) 84, 251, 299, 531
StyD4I CCNGG 2 cut(s) 451, 484
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 13, 248
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 492
TasI AATT 1 cut(s) 273
TatI WGTACW 1 cut(s) 60
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 5 cut(s) 29, 254, 257, 438, 479
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 94, 258, 410
TspRI CASTG 1 cut(s) 298
Van91I CCANNNNNTGG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 449
XceI RCATGY 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XspI CTAG 4 cut(s) 84, 251, 299, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.