AT1G04900

Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008769
Physical Location & Seq
Forward (+)
1383841 .. 1387895
4055 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04900.1

Sequence Viewer

Length: 1329 bp
ATGGCTTTCGTTCGATATATCCCTTGTCGGAAGATTCCACGAAATGTTGATCAATTCGAGCTGCCATGTCTTGGATCGCTTCGAGCTTTCTTCTCTACTCAGAAGCTCATAGGGGATGAACCAGTTCTCGTTCGAGATTTCATACACACTGCATTATATGATCCAATACAAGGCTACTTCTCTCAACGGTCAAAATCTGTCGGGGTTTTGGAGAGAAGCATTAAGTTCAACCAGCTTGAAGGGAGGAAAGCATACATGAAACTCTTGGAAAAAGTATACAAGCAGAGTGACATTTCTTGGTTTACTCCAGTGGAGCTTTTCAAGCCTTGGTATGCTCATGGGATTGCAGAAGCTATACTGCGTACCACAAATCTCTCAGTTCCATTAAAGATATACGAAATTGGTGGTGGATCGGGCACATGTGCCAAGGGTGTATTGGACTATATAATGTTGAATGCTCCGGAGAGAATCTACAAGAACATGAGCTACACTTCTATAGAAATCAGTCCCTCACTTGCTAAGATTCAGAAGGAAACTGTTGCACAAGTTGGAAGTCATCTATCAAAGTTCCGAGTTGAGTGTCGTGATGCATCTGACCTAGCTGGATGGAAGAATGTGGAGCAACAACCGTGCTGGGTGATAATGCTTGAGGTGCTAGATAATCTCCCACATGATCTTGTCTATTCCAAAAGTCAACTTTCCCCATGGATGGAAGTCTTGGTTGAAAATAAACCAGAGAGCGAAGCACTCTCTGAGCTATACAAGCCTTTAGAAGATCCACTGATTAAGCGGTGCATTGAAATTGTTGAACATGAAGATGATCCGGTTTCAAAACCAAAAGAAATTTGGTCTAAACTATTTCCCAAACCTAGACGTAGTTGGCTTCCAACAGGTTGTTTGAAACTGCTAGAGGTTTTACATGCAAAGCTGCCAAAGATGTCCCTAATTGCTTCGGACTTTAGCTTCTTGCCTGATGTGAAAGTTCCTGGTGAAAGAGCCCCATTGGTTTCAACAAAGAAAGATGGATGTAGCTCAGATTACAGTAGTTATCTGGACGCAAAGGGTGATGCTGATATATTTTTCCCAACCGATTTCTGGCTTCTAGAACGAATGGACCATTATTGTTCCGGTTGGAGGAAGATGGAAAAAGACGGGACACCATCGAAAAAAGGAAGGAAAAGGCGAACTCTCACTCTTGATACATCAGCGTTCATGGATGAGTTTGGTTTACCTTCAAAGACGAGAACAAAGGACGGATATAACCCCTTACTTGATGACTTCAAGAACACTAAGTTCTATCTTAGTGTCCCAACACACAACACTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_28

Protein Analysis

442

Amino Acids

50.6

Weight (kDa)

8.63

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_28 PF02636 127 - 379 1.6e-33 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AccI GTMKAC 1 cut(s) 276
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 1 cut(s) 790
AclWI GGATC 5 cut(s) 82, 155, 418, 770, 815
AcsI RAATTY 1 cut(s) 843
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 5 cut(s) 71, 170, 709, 1095, 1134
AflIII ACRYGT 1 cut(s) 419
AjnI CCWGG 1 cut(s) 985
AlwI GGATC 5 cut(s) 82, 155, 418, 770, 815
Aor13HI TCCGGA 1 cut(s) 460
ApeKI GCWGC 2 cut(s) 61, 928
ApoI RAATTY 1 cut(s) 843
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 1114
AsuHPI GGTGA 3 cut(s) 649, 1001, 1076
AvaII GGWCC 1 cut(s) 1114
BaeGI GKGCMC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 1000
BbvI GCAGC 2 cut(s) 48, 915
BccI CCATC 5 cut(s) 600, 703, 1016, 1135, 1168
BciT130I CCWGG 1 cut(s) 987
BclI TGATCA 1 cut(s) 49
BfaI CTAG 5 cut(s) 599, 656, 870, 908, 1103
BfmI CTRYAG 1 cut(s) 495
BisI GCNGC 2 cut(s) 62, 929
BlsI GCNGC 2 cut(s) 63, 930
Bme1390I CCNGG 1 cut(s) 987
Bme18I GGWCC 1 cut(s) 1114
BmgT120I GGNCC 1 cut(s) 1114
BmrFI CCNGG 1 cut(s) 987
BmsI GCATC 3 cut(s) 577, 599, 1057
BpmI CTGGAG 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 668
BsaJI CCNNGG 3 cut(s) 326, 426, 704
BsaWI WCCGGW 3 cut(s) 460, 823, 1127
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 170, 709, 1095, 1134
Bse1I ACTGG 2 cut(s) 122, 308
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 1 cut(s) 987
BseDI CCNNGG 3 cut(s) 326, 426, 704
BseGI GGATG 5 cut(s) 121, 611, 714, 1031, 1222
BseLI CCNNNNNNNGG 5 cut(s) 71, 170, 709, 1095, 1134
BseMII CTCAG 4 cut(s) 113, 390, 744, 1047
BseNI ACTGG 2 cut(s) 122, 308
BseSI GKGCMC 1 cut(s) 419
BseXI GCAGC 2 cut(s) 48, 915
BseYI CCCAGC 1 cut(s) 633
BsiSI CCGG 3 cut(s) 461, 824, 1128
BslFI GGGAC 4 cut(s) 492, 925, 1168, 1292
BslI CCNNNNNNNGG 5 cut(s) 71, 170, 709, 1095, 1134
BsmFI GGGAC 4 cut(s) 492, 925, 1168, 1292
BsmI GAATGC 1 cut(s) 460
Bsp1286I GDGCHC 2 cut(s) 419, 1000
Bsp13I TCCGGA 1 cut(s) 460
Bsp143I GATC 7 cut(s) 49, 74, 160, 410, 673, 775, 820
Bsp19I CCATGG 1 cut(s) 704
BspACI CCGC 1 cut(s) 790
BspCNI CTCAG 4 cut(s) 112, 389, 745, 1046
BspEI TCCGGA 1 cut(s) 460
BspPI GGATC 5 cut(s) 82, 155, 418, 770, 815
BsrI ACTGG 2 cut(s) 122, 308
BssECI CCNNGG 3 cut(s) 326, 426, 704
BssMI GATC 7 cut(s) 49, 74, 160, 410, 673, 775, 820
BssNAI GTATAC 1 cut(s) 277
BssT1I CCWWGG 3 cut(s) 326, 426, 704
Bst1107I GTATAC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 987
Bst4CI ACNGT 4 cut(s) 189, 538, 630, 1043
BstDEI CTNAG 8 cut(s) 99, 376, 519, 753, 1033, 1290, 1301, 1323
BstDSI CCRYGG 1 cut(s) 704
BstF5I GGATG 5 cut(s) 121, 611, 714, 1031, 1222
BstKTI GATC 7 cut(s) 52, 77, 163, 413, 676, 778, 823
BstMBI GATC 7 cut(s) 49, 74, 160, 410, 673, 775, 820
BstMWI GCNNNNNNNGC 3 cut(s) 322, 652, 763
BstNI CCWGG 1 cut(s) 987
BstNSI RCATGY 2 cut(s) 423, 923
BstSCI CCNGG 1 cut(s) 985
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 48, 915
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
BstZ17I GTATAC 1 cut(s) 277
BtgI CCRYGG 1 cut(s) 704
BtsCI GGATG 5 cut(s) 121, 611, 714, 1031, 1222
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 3 cut(s) 147, 315, 779
Cfr13I GGNCC 1 cut(s) 1114
CseI GACGC 1 cut(s) 1064
Csp6I GTAC 1 cut(s) 363
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 8 cut(s) 99, 376, 519, 753, 1033, 1290, 1301, 1323
DpnI GATC 7 cut(s) 51, 76, 162, 412, 675, 777, 822
DpnII GATC 7 cut(s) 49, 74, 160, 410, 673, 775, 820
Eco130I CCWWGG 3 cut(s) 326, 426, 704
Eco24I GRGCYC 1 cut(s) 1000
Eco47I GGWCC 1 cut(s) 1114
EcoRII CCWGG 1 cut(s) 985
EcoT14I CCWWGG 3 cut(s) 326, 426, 704
EcoT22I ATGCAT 1 cut(s) 592
EcoT38I GRGCYC 1 cut(s) 1000
ErhI CCWWGG 3 cut(s) 326, 426, 704
FaqI GGGAC 4 cut(s) 492, 925, 1168, 1292
FbaI TGATCA 1 cut(s) 49
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 62, 929
FokI GGATG 5 cut(s) 128, 618, 721, 1038, 1229
FriOI GRGCYC 1 cut(s) 1000
Fsp4HI GCNGC 2 cut(s) 62, 929
FspBI CTAG 5 cut(s) 599, 656, 870, 908, 1103
GluI GCNGC 2 cut(s) 62, 929
GsaI CCCAGC 1 cut(s) 637
GsuI CTGGAG 1 cut(s) 291
HapII CCGG 3 cut(s) 461, 824, 1128
HgaI GACGC 1 cut(s) 1064
HincII GTYRAC 1 cut(s) 695
HindII GTYRAC 1 cut(s) 695
HinfI GANTC 3 cut(s) 34, 468, 523
HpaII CCGG 3 cut(s) 461, 824, 1128
HphI GGTGA 3 cut(s) 649, 1001, 1076
Hpy166II GTNNAC 4 cut(s) 277, 303, 695, 1229
Hpy188I TCNGA 8 cut(s) 30, 102, 528, 572, 595, 754, 955, 1036
Hpy188III TCNNGA 7 cut(s) 134, 461, 584, 1052, 1103, 1196, 1282
Hpy8I GTNNAC 4 cut(s) 277, 303, 695, 1229
HpyAV CCTTC 4 cut(s) 233, 523, 1167, 1242
HpyCH4III ACNGT 4 cut(s) 189, 538, 630, 1043
HpyCH4IV ACGT 1 cut(s) 874
HpyCH4V TGCA 6 cut(s) 152, 347, 542, 590, 795, 923
HpyF10VI GCNNNNNNNGC 3 cut(s) 322, 652, 763
HpyF3I CTNAG 8 cut(s) 99, 376, 519, 753, 1033, 1290, 1301, 1323
HpySE526I ACGT 1 cut(s) 874
Kpn2I TCCGGA 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 7 cut(s) 49, 74, 160, 410, 673, 775, 820
LmnI GCTCC 3 cut(s) 313, 463, 619
Lsp1109I GCAGC 2 cut(s) 48, 915
LweI GCATC 3 cut(s) 577, 599, 1057
MaeI CTAG 5 cut(s) 599, 656, 870, 908, 1103
MaeII ACGT 1 cut(s) 874
MaeIII GTNAC 1 cut(s) 287
MalI GATC 7 cut(s) 51, 76, 162, 412, 675, 777, 822
MboI GATC 7 cut(s) 49, 74, 160, 410, 673, 775, 820
MboII GAAGA 6 cut(s) 43, 82, 622, 785, 827, 1150
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 419, 1000
MluCI AATT 5 cut(s) 53, 399, 801, 843, 945
MmeI TCCRAC 4 cut(s) 8, 529, 911, 1112
MnlI CCTC 5 cut(s) 237, 520, 643, 904, 1128
Mph1103I ATGCAT 1 cut(s) 592
MroI TCCGGA 1 cut(s) 460
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 3 cut(s) 222, 386, 786
MslI CAYNNNNRTG 1 cut(s) 816
MspI CCGG 3 cut(s) 461, 824, 1128
MspR9I CCNGG 1 cut(s) 987
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 1 cut(s) 987
MwoI GCNNNNNNNGC 3 cut(s) 322, 652, 763
NcoI CCATGG 1 cut(s) 704
NdeII GATC 7 cut(s) 49, 74, 160, 410, 673, 775, 820
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 2 cut(s) 423, 923
PciI ACATGT 1 cut(s) 419
PctI GAATGC 1 cut(s) 460
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 3 cut(s) 34, 468, 523
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 2 cut(s) 63, 930
PscI ACATGT 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 985
PspFI CCCAGC 1 cut(s) 633
PspGI CCWGG 1 cut(s) 985
PspPI GGNCC 1 cut(s) 1114
PsrI GAACNNNNNNTAC 2 cut(s) 470, 502
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 3 cut(s) 222, 386, 786
SatI GCNGC 2 cut(s) 62, 929
Sau3AI GATC 7 cut(s) 49, 74, 160, 410, 673, 775, 820
Sau96I GGNCC 1 cut(s) 1114
ScrFI CCNGG 1 cut(s) 987
SduI GDGCHC 2 cut(s) 419, 1000
SfaNI GCATC 3 cut(s) 577, 599, 1057
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 1 cut(s) 1114
SmiMI CAYNNNNRTG 1 cut(s) 816
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 5 cut(s) 53, 399, 801, 843, 945
SsiI CCGC 1 cut(s) 790
SspMI CTAG 5 cut(s) 599, 656, 870, 908, 1103
StyD4I CCNGG 1 cut(s) 985
StyI CCWWGG 3 cut(s) 326, 426, 704
TaaI ACNGT 4 cut(s) 189, 538, 630, 1043
TaiI ACGT 1 cut(s) 877
TaqI TCGA 5 cut(s) 13, 57, 82, 133, 1163
TasI AATT 5 cut(s) 53, 399, 801, 843, 945
TfiI GAWTC 3 cut(s) 34, 468, 523
Tru1I TTAA 3 cut(s) 222, 386, 786
Tru9I TTAA 3 cut(s) 222, 386, 786
TscAI CASTG 3 cut(s) 154, 315, 786
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 2 cut(s) 61, 928
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 5 cut(s) 130, 132, 272, 828, 1201
TspGWI ACGGA 1 cut(s) 1269
TspRI CASTG 3 cut(s) 154, 315, 786
Van91I CCANNNNNTGG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 1114
XapI RAATTY 1 cut(s) 843
XbaI TCTAGA 1 cut(s) 1102
XceI RCATGY 2 cut(s) 423, 923
XcmI CCANNNNNNNNNTGG 3 cut(s) 433, 843, 1092
XmiI GTMKAC 1 cut(s) 276
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 5 cut(s) 599, 656, 870, 908, 1103
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.