Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002402.1

Orthogroup ID

OG0008769

Physical Location & Seq

Genomic Coordinates Forward (+)

16972 .. 26766

Gene Structure 9795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002402.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

atggcgatgatgagtcgcactctaagttccaagactcttcctttgctcttccgcaaccccaaagtgaacccatgtgaactctgggcacctccatcccaagcccttttctccacacacattgttggtgaaaaaccagttcttgttcgtgatttcattcattctgcactatatgaccctcgacatggttatttcgctcaaagatcgaggtcggttggtgtgcttcagaaagccattaagttcaatcagattgagggcaggaaagcttacatgaaatacttggataaaatatacaagggaagtgagatatcgtggtttactcctgtggaactttttaagccttggtatgcccacgggatagctgaagccataatgcgtaccgctaacctttcagttcccctcaagatatatgaaattggtggtggatcaggaacttgtgcaaagggaatcatggattacatattgttgaatgcacctaccagagtttacaacaatatgacttacgtctcagttgaaatcagtccctcactggctgagctacaaagagaaactgttggagaagttcgtagtcacttatcaaagtttcgagtcgaatgccgtgatgctgctgaccggaagggatggggggatgtggagcaagagccatgctgggtaataatgctcgaggtacttgataatcttccacatgatctcatctattctgaaaatcaagtttcaccatggaaggaagtttgggtggagaaccaagatggagaaacactatctgaattgtacaagccattgcaagactcactaattaagcgatgcattgagatcatcgacttcgagaaaaaacatgattctgaaagcagtgcattattgaaagcaaaaagtgtttggtctaaagtcttcccaaaacctcgaagaagttggctaccaactggttgcttgaaactacttgaagtgttacatggagcactaccaaagatgtctttgattgcttcagactttagttacctacctgacgtgagaatacttggtgaaagagctccattggtttctaccaagaaagatggcagcagctcagactatggcagttatcttgatgcaaagggggatgctgatatcttcttccccactgaattttggttattggaacgtattgatcattactgttctggatggatgaagctgcaaaaagataactcatccaaagaaggaaagaagaggcgaacaattatacttgatacatcttcattcatggaagaatttggattgccctcgaggacaagaaccaaggatggatacaatccacttttggatgacttcaagaatacaaaattctatctaagtgtcccaacacataatacttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_28

Protein Analysis

450

Amino Acids

51.37

Weight (kDa)

8.46

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04900
fragaria_vesca	FvH4_1g23291 FvH4_4g15840 FvH4_4g15840 FvH4_4g15840 FvH4_4g15840
malus_domestica	MD04G1008200.v1.1
prunus_persica	Prupe.1G006900_v2.0.a1 Prupe.1G006900_v2.0.a1 Prupe.1G006900_v2.0.a1 Prupe.1G006900_v2.0.a1
pyrus_communis	pycom04g00610
rosa_chinensis	RchiOBHm_Chr4g0415411
rosa_laevigata	RLG00000008072
rosa_multiflora	Rmu_sc0002402.1_g000004
rosa_roxburghii	Rroxscaffold_5G00359160
rosa_rugosa	Rorug04G0134100 Rorug04G0134200
rosa_samantha	Rh4AG194500 Rh4BG193200 Rh4CG205500 Rh4DG192200
rosa_wichuraiana	Rw4G016560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1258
AccB1I	GGYRCC	1 cut(s)	85
AciI	CCGC	2 cut(s)	52, 378
AclWI	GGATC	1 cut(s)	430
AcsI	RAATTY	3 cut(s)	1118, 1244, 1316
AcuI	CTGAAG	3 cut(s)	206, 381, 963
AfaI	GTAC	3 cut(s)	376, 666, 770
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	7 cut(s)	241, 466, 512, 859, 928, 938, 1306
AjiI	CACGTC	1 cut(s)	1003
AluBI	AGCT	6 cut(s)	263, 359, 535, 1025, 1059, 1168
AluI	AGCT	6 cut(s)	263, 359, 535, 1025, 1059, 1168
Alw21I	GWGCWC	2 cut(s)	955, 1027
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	2 cut(s)	659, 1258
ApeKI	GCWGC	4 cut(s)	602, 1053, 1056, 1168
ApoI	RAATTY	3 cut(s)	1118, 1244, 1316
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
AsuHPI	GGTGA	3 cut(s)	137, 705, 1028
AvaI	CYCGRG	2 cut(s)	659, 1258
BaeGI	GKGCMC	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	1027
BbsI	GAAGAC	1 cut(s)	877
Bbv12I	GWGCWC	2 cut(s)	955, 1027
BbvI	GCAGC	4 cut(s)	589, 1065, 1068, 1155
BccI	CCATC	6 cut(s)	100, 612, 740, 1043, 1152, 1271
BceAI	ACGGC	1 cut(s)	579
BcgI	CGANNNNNNTGC	2 cut(s)	573, 607
BciVI	GTATCC	1 cut(s)	1274
BclI	TGATCA	1 cut(s)	1141
BcoDI	GTCTC	1 cut(s)	508
BfuI	GTATCC	1 cut(s)	1274
BisI	GCNGC	4 cut(s)	603, 1054, 1057, 1169
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	4 cut(s)	604, 1055, 1058, 1170
BmeT110I	CYCGRG	2 cut(s)	659, 1258
BmgBI	CACGTC	1 cut(s)	1003
BmiI	GGNNCC	1 cut(s)	87
BmsI	GCATC	4 cut(s)	589, 791, 1072, 1084
BoxI	GACNNNNGTC	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	877
BplI	GAGNNNNNCTC	1 cut(s)	36
Bpu1102I	GCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	383
BsaJI	CCNNGG	4 cut(s)	338, 349, 716, 1272
BsaWI	WCCGGW	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	3 cut(s)	134, 531, 922
Bse3DI	GCAATG	1 cut(s)	776
BseDI	CCNNGG	4 cut(s)	338, 349, 716, 1272
BseGI	GGATG	9 cut(s)	92, 623, 631, 1099, 1163, 1167, 1184, 1282, 1303
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	776
BseMII	CTCAG	3 cut(s)	519, 522, 1074
BseNI	ACTGG	3 cut(s)	134, 531, 922
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	4 cut(s)	589, 1065, 1068, 1155
BseYI	CCCAGC	1 cut(s)	645
BsgI	GTGCAG	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	85
BsiHKAI	GWGCWC	2 cut(s)	955, 1027
BsiHKCI	CYCGRG	2 cut(s)	659, 1258
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	2 cut(s)	504, 1316
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	508
BsmBI	CGTCTC	1 cut(s)	508
BsmFI	GGGAC	2 cut(s)	504, 1316
BsmI	GAATGC	2 cut(s)	472, 596
BsoBI	CYCGRG	2 cut(s)	659, 1258
Bsp1286I	GDGCHC	3 cut(s)	88, 955, 1027
Bsp1407I	TGTACA	1 cut(s)	768
Bsp143I	GATC	5 cut(s)	200, 422, 685, 810, 1141
Bsp1720I	GCTNAGC	1 cut(s)	531
Bsp19I	CCATGG	1 cut(s)	716
BspACI	CCGC	2 cut(s)	52, 378
BspCNI	CTCAG	3 cut(s)	518, 523, 1073
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	430
BspQI	GCTCTTC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	776
BsrGI	TGTACA	1 cut(s)	768
BsrI	ACTGG	3 cut(s)	134, 531, 922
BssECI	CCNNGG	4 cut(s)	338, 349, 716, 1272
BssMI	GATC	5 cut(s)	200, 422, 685, 810, 1141
BssT1I	CCWWGG	3 cut(s)	338, 716, 1272
Bst4CI	ACNGT	2 cut(s)	550, 1151
Bst6I	CTCTTC	3 cut(s)	42, 53, 1196
BstAUI	TGTACA	1 cut(s)	768
BstDEI	CTNAG	5 cut(s)	23, 505, 531, 1060, 1325
BstDSI	CCRYGG	2 cut(s)	349, 716
BstF5I	GGATG	9 cut(s)	92, 623, 631, 1099, 1163, 1167, 1184, 1282, 1303
BstKTI	GATC	5 cut(s)	203, 425, 688, 813, 1144
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	5 cut(s)	200, 422, 685, 810, 1141
BstPAI	GACNNNNGTC	1 cut(s)	500
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	4 cut(s)	589, 1065, 1068, 1155
BstV2I	GAAGAC	1 cut(s)	877
BsuI	GTATCC	1 cut(s)	1274
BtgI	CCRYGG	2 cut(s)	349, 716
BtgZI	GCGATG	2 cut(s)	20, 814
BtrI	CACGTC	1 cut(s)	1003
BtsCI	GGATG	9 cut(s)	92, 623, 631, 1099, 1163, 1167, 1184, 1282, 1303
BtsI	GCAGTG	1 cut(s)	853
BtsIMutI	CAGTG	3 cut(s)	524, 853, 1113
Csp6I	GTAC	3 cut(s)	375, 665, 769
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviQI	GTAC	3 cut(s)	375, 665, 769
DdeI	CTNAG	5 cut(s)	23, 505, 531, 1060, 1325
DpnI	GATC	5 cut(s)	202, 424, 687, 812, 1143
DpnII	GATC	5 cut(s)	200, 422, 685, 810, 1141
Eam1104I	CTCTTC	3 cut(s)	42, 53, 1196
EarI	CTCTTC	3 cut(s)	42, 53, 1196
Ecl136II	GAGCTC	1 cut(s)	1025
Eco130I	CCWWGG	3 cut(s)	338, 716, 1272
Eco24I	GRGCYC	1 cut(s)	1027
Eco32I	GATATC	2 cut(s)	306, 1102
Eco53kI	GAGCTC	1 cut(s)	1025
Eco57I	CTGAAG	3 cut(s)	206, 381, 963
Eco88I	CYCGRG	2 cut(s)	659, 1258
EcoICRI	GAGCTC	1 cut(s)	1025
EcoRV	GATATC	2 cut(s)	306, 1102
EcoT14I	CCWWGG	3 cut(s)	338, 716, 1272
EcoT22I	ATGCAT	1 cut(s)	806
EcoT38I	GRGCYC	1 cut(s)	1027
ErhI	CCWWGG	3 cut(s)	338, 716, 1272
Esp3I	CGTCTC	1 cut(s)	508
FaqI	GGGAC	2 cut(s)	504, 1316
FbaI	TGATCA	1 cut(s)	1141
Fnu4HI	GCNGC	4 cut(s)	603, 1054, 1057, 1169
FokI	GGATG	9 cut(s)	79, 630, 638, 1106, 1170, 1171, 1174, 1289, 1310
FriOI	GRGCYC	1 cut(s)	1027
Fsp4HI	GCNGC	4 cut(s)	603, 1054, 1057, 1169
GluI	GCNGC	4 cut(s)	603, 1054, 1057, 1169
GsaI	CCCAGC	1 cut(s)	649
HapII	CCGG	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	6 cut(s)	13, 34, 444, 585, 785, 836
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	3 cut(s)	137, 705, 1028
Hpy166II	GTNNAC	4 cut(s)	67, 77, 315, 484
Hpy188I	TCNGA	7 cut(s)	225, 246, 700, 763, 841, 982, 1063
Hpy188III	TCNNGA	7 cut(s)	146, 400, 426, 823, 1079, 1155, 1306
Hpy8I	GTNNAC	4 cut(s)	67, 77, 315, 484
HpyAV	CCTTC	3 cut(s)	607, 715, 1187
HpyCH4III	ACNGT	2 cut(s)	550, 1151
HpyCH4IV	ACGT	3 cut(s)	501, 1002, 1135
HpyCH4V	TGCA	8 cut(s)	164, 437, 470, 781, 804, 851, 1085, 1171
HpyF3I	CTNAG	5 cut(s)	23, 505, 531, 1060, 1325
HpySE526I	ACGT	3 cut(s)	501, 1002, 1135
Ksp22I	TGATCA	1 cut(s)	1141
Kzo9I	GATC	5 cut(s)	200, 422, 685, 810, 1141
LguI	GCTCTTC	1 cut(s)	53
LmnI	GCTCC	3 cut(s)	631, 950, 1030
Lsp1109I	GCAGC	4 cut(s)	589, 1065, 1068, 1155
LweI	GCATC	4 cut(s)	589, 791, 1072, 1084
MaeII	ACGT	3 cut(s)	501, 1002, 1135
MaeIII	GTNAC	3 cut(s)	566, 942, 989
MalI	GATC	5 cut(s)	202, 424, 687, 812, 1143
MboI	GATC	5 cut(s)	200, 422, 685, 810, 1141
MhlI	GDGCHC	3 cut(s)	88, 955, 1027
MluCI	AATT	7 cut(s)	411, 764, 792, 1118, 1212, 1244, 1316
MlyI	GAGTC	4 cut(s)	22, 28, 594, 779
MmeI	TCCRAC	1 cut(s)	532
Mph1103I	ATGCAT	1 cut(s)	806
MseI	TTAA	3 cut(s)	234, 333, 795
MspI	CCGG	1 cut(s)	610
Mva1269I	GAATGC	2 cut(s)	472, 596
NcoI	CCATGG	1 cut(s)	716
NdeII	GATC	5 cut(s)	200, 422, 685, 810, 1141
NlaIV	GGNNCC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	566
NsiI	ATGCAT	1 cut(s)	806
PaeR7I	CTCGAG	2 cut(s)	659, 1258
PciSI	GCTCTTC	1 cut(s)	53
PctI	GAATGC	2 cut(s)	472, 596
PfeI	GAWTC	2 cut(s)	444, 836
PkrI	GCNGC	4 cut(s)	604, 1055, 1058, 1170
PleI	GAGTC	4 cut(s)	21, 28, 593, 779
PpsI	GAGTC	4 cut(s)	21, 28, 593, 779
PshAI	GACNNNNGTC	1 cut(s)	500
Psp124BI	GAGCTC	1 cut(s)	1027
PspFI	CCCAGC	1 cut(s)	645
PspN4I	GGNNCC	1 cut(s)	87
PspXI	VCTCGAGB	2 cut(s)	659, 1258
RsaI	GTAC	3 cut(s)	376, 666, 770
RsaNI	GTAC	3 cut(s)	375, 665, 769
SacI	GAGCTC	1 cut(s)	1027
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	234, 333, 795
SatI	GCNGC	4 cut(s)	603, 1054, 1057, 1169
Sau3AI	GATC	5 cut(s)	200, 422, 685, 810, 1141
SchI	GAGTC	4 cut(s)	22, 28, 594, 779
SduI	GDGCHC	3 cut(s)	88, 955, 1027
SfaNI	GCATC	4 cut(s)	589, 791, 1072, 1084
Sfr274I	CTCGAG	2 cut(s)	659, 1258
SlaI	CTCGAG	2 cut(s)	659, 1258
SmlI	CTYRAG	3 cut(s)	398, 659, 1258
SmoI	CTYRAG	3 cut(s)	398, 659, 1258
Sse9I	AATT	7 cut(s)	411, 764, 792, 1118, 1212, 1244, 1316
SsiI	CCGC	2 cut(s)	52, 378
SstI	GAGCTC	1 cut(s)	1027
StyI	CCWWGG	3 cut(s)	338, 716, 1272
TaaI	ACNGT	2 cut(s)	550, 1151
TaiI	ACGT	3 cut(s)	504, 1005, 1138
TaqI	TCGA	9 cut(s)	178, 203, 583, 588, 660, 816, 822, 898, 1259
TasI	AATT	7 cut(s)	411, 764, 792, 1118, 1212, 1244, 1316
TatI	WGTACW	1 cut(s)	768
TfiI	GAWTC	2 cut(s)	444, 836
Tru1I	TTAA	3 cut(s)	234, 333, 795
Tru9I	TTAA	3 cut(s)	234, 333, 795
TscAI	CASTG	3 cut(s)	531, 853, 1120
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	4 cut(s)	602, 1053, 1056, 1168
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	8 cut(s)	142, 146, 284, 423, 1178, 1221, 1225, 1338
TspRI	CASTG	3 cut(s)	531, 853, 1120
XapI	RAATTY	3 cut(s)	1118, 1244, 1316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78
XhoI	CTCGAG	2 cut(s)	659, 1258
Zsp2I	ATGCAT	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.