FvH4_4g15840

Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH ubiquinone oxidoreductase complex (complex I)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008769
Physical Location & Seq
Forward (+)
19763243 .. 19774997
11755 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15840.t2

Sequence Viewer

Length: 1344 bp
ATGATGAGTCGCTCTCTCCGTTCCAAGACTCTTCCTTTGCTCTTCCCCCGCAACCCCAAAGTGAACCCGTGTGAACTCTGGGCACTTCCATCTCAAGCCCTTTTCTCCACACACATTGTTGGTGAAAAACCAGTTCTTGTTCGTGATTTCATTCATTCTGCATTATATGACCCCAGACATGGTTATTTCGCTCAAAGATGGAGGTCGGTTGGTGTGCTTCAGAAAGCCATCAATTTCAATCAGATTGAGGGCAGGAAAGCTTATATGAAATACTTGGATAAAATATACAAGGGAAGTGAGATATCGTGGTTTACTCCTGTGGAAATTTTTAAGCCTTGGTATGCCCACGGGATAGCTGAAGCCATAATGCGTACTGCTAACCTTTCAGTTCCTCTTAAGATATATGAAATTGGTGGTGGATCAGGAACTTGTGCAAAGGGAATCATGGATTACATATTGTTGAATGCACCTACAAGAGTTTACAACAATATGACTTACACCTCAGTTGAAATCAGTCCCTTACTGGCTGAGCTACAAAGAGAAACTGTTGGAGAAGTTCGTAGTCACTTATCAAAGTTTCGAGTCGAATGCCGTGATGCTGCTGACAGGAAGGGATGGGGGGACGTGCAGCAAGAGCCATGCTGGGTAATAATGCTTGAGGTACTTGATAATCTTCCACATGATCTCATCTATTCTGAAAATCAAGTTTCACCATGGAAGGAAGTTTGGGTGGCGAACCAAGATGGGGAAACACTAACTGAATTGTACAAGCCATTGCAAGACTCACTAATTAAGAAATGCATTAAGATCATCGACTTTGAGAAAAAACAGGATTCTCAAAGCAGTGCATTATTAAAAAGTGTTTGGTCTAAAGTCTACCCAAAACCTAGAAGAAGTTGGCTACCAACTGGTTGCTTGAAACTACTTGAAGTGTTACATGGAGCACTACCAAAGATGTCTTTGATTGCTTCAGACTTTAGTTACCTTCCTGACGTGAAAATACTTGGTGAAAGAGCTCCATTGGTTTCAACCAAGAAAGATGGCAGCAGCACAGACTATGGTAGTTATCTTGATGCAAAGGGGGATGCCGATATCTTCTTCCCTACCGAATTCTGGTTATTGGAACGTATTGATCATTACTGTTCTGGATGGAAGAAGCTGCAAAAAGATGACTCATCCAAAGAAGGAAAGAAGAGGCGAACAATTATACTTGATACGTCATCATTCATGGAAGAATTTGGATTGCCCTCGAGGACAAGAACCAAGGATGGATACAATCCACTTTTGGATGACTTCAAGAATACAAAATTCTATTTAAGTGTCCCAACACATAATACTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_28

Protein Analysis

448

Amino Acids

51.17

Weight (kDa)

8.88

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_28 PF02636 122 - 386 2.2e-30 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1249
AccI GTMKAC 1 cut(s) 876
AciI CCGC 1 cut(s) 49
AclWI GGATC 1 cut(s) 427
AcsI RAATTY 4 cut(s) 324, 1109, 1235, 1307
AcuI CTGAAG 3 cut(s) 203, 378, 954
AfaI GTAC 3 cut(s) 373, 663, 767
AfiI CCNNNNNNNGG 3 cut(s) 179, 745, 1113
AflII CTTAAG 1 cut(s) 395
AgsI TTSAA 7 cut(s) 238, 463, 509, 919, 929, 1029, 1297
AjiI CACGTC 2 cut(s) 625, 994
AluBI AGCT 5 cut(s) 260, 356, 532, 1016, 1159
AluI AGCT 5 cut(s) 260, 356, 532, 1016, 1159
Alw21I GWGCWC 2 cut(s) 946, 1018
AlwI GGATC 1 cut(s) 427
Ama87I CYCGRG 1 cut(s) 1249
ApeKI GCWGC 5 cut(s) 599, 628, 1044, 1047, 1159
ApoI RAATTY 4 cut(s) 324, 1109, 1235, 1307
ArsI GACNNNNNNTTYG 2 cut(s) 19, 51
AsuHPI GGTGA 3 cut(s) 134, 702, 1019
AvaI CYCGRG 1 cut(s) 1249
BaeGI GKGCMC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 1018
Bbv12I GWGCWC 2 cut(s) 946, 1018
BbvI GCAGC 5 cut(s) 586, 640, 1056, 1059, 1146
BccI CCATC 8 cut(s) 97, 192, 236, 609, 737, 1034, 1143, 1262
BceAI ACGGC 1 cut(s) 576
BcgI CGANNNNNNTGC 2 cut(s) 570, 604
BciVI GTATCC 1 cut(s) 1265
BclI TGATCA 1 cut(s) 1132
BfaI CTAG 1 cut(s) 888
BfrI CTTAAG 1 cut(s) 395
BfuI GTATCC 1 cut(s) 1265
BisI GCNGC 5 cut(s) 600, 629, 1045, 1048, 1160
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 5 cut(s) 601, 630, 1046, 1049, 1161
BmeT110I CYCGRG 1 cut(s) 1249
BmgBI CACGTC 2 cut(s) 625, 994
BmsI GCATC 3 cut(s) 586, 1063, 1075
BplI GAGNNNNNCTC 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 528
BpuEI CTTGAG 2 cut(s) 78, 677
BsaJI CCNNGG 4 cut(s) 335, 346, 713, 1263
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 745, 1113
Bse1I ACTGG 3 cut(s) 131, 528, 913
Bse3DI GCAATG 1 cut(s) 773
BseDI CCNNGG 4 cut(s) 335, 346, 713, 1263
BseGI GGATG 6 cut(s) 620, 1090, 1154, 1175, 1273, 1294
BseLI CCNNNNNNNGG 3 cut(s) 179, 745, 1113
BseMI GCAATG 1 cut(s) 773
BseMII CTCAG 2 cut(s) 516, 519
BseNI ACTGG 3 cut(s) 131, 528, 913
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 5 cut(s) 586, 640, 1056, 1059, 1146
BseYI CCCAGC 1 cut(s) 642
BsgI GTGCAG 1 cut(s) 647
BsiHKAI GWGCWC 2 cut(s) 946, 1018
BsiHKCI CYCGRG 1 cut(s) 1249
BslFI GGGAC 3 cut(s) 501, 635, 1307
BslI CCNNNNNNNGG 3 cut(s) 179, 745, 1113
BsmFI GGGAC 3 cut(s) 501, 635, 1307
BsmI GAATGC 2 cut(s) 469, 593
BsoBI CYCGRG 1 cut(s) 1249
Bsp1286I GDGCHC 3 cut(s) 85, 946, 1018
Bsp1407I TGTACA 1 cut(s) 765
Bsp143I GATC 4 cut(s) 419, 682, 807, 1132
Bsp1720I GCTNAGC 1 cut(s) 528
Bsp19I CCATGG 1 cut(s) 713
BspACI CCGC 1 cut(s) 49
BspCNI CTCAG 2 cut(s) 515, 520
BspPI GGATC 1 cut(s) 427
BspQI GCTCTTC 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 773
BsrGI TGTACA 1 cut(s) 765
BsrI ACTGG 3 cut(s) 131, 528, 913
BssECI CCNNGG 4 cut(s) 335, 346, 713, 1263
BssMI GATC 4 cut(s) 419, 682, 807, 1132
BssT1I CCWWGG 3 cut(s) 335, 713, 1263
Bst4CI ACNGT 2 cut(s) 547, 1142
Bst6I CTCTTC 3 cut(s) 36, 47, 1187
BstAFI CTTAAG 1 cut(s) 395
BstAUI TGTACA 1 cut(s) 765
BstDEI CTNAG 2 cut(s) 502, 528
BstDSI CCRYGG 2 cut(s) 346, 713
BstF5I GGATG 6 cut(s) 620, 1090, 1154, 1175, 1273, 1294
BstKTI GATC 4 cut(s) 422, 685, 810, 1135
BstMBI GATC 4 cut(s) 419, 682, 807, 1132
BstMWI GCNNNNNNNGC 1 cut(s) 634
BstSLI GKGCMC 1 cut(s) 85
BstV1I GCAGC 5 cut(s) 586, 640, 1056, 1059, 1146
BsuI GTATCC 1 cut(s) 1265
BtgI CCRYGG 2 cut(s) 346, 713
BtrI CACGTC 2 cut(s) 625, 994
BtsCI GGATG 6 cut(s) 620, 1090, 1154, 1175, 1273, 1294
BtsI GCAGTG 1 cut(s) 850
BtsIMutI CAGTG 1 cut(s) 850
Csp6I GTAC 3 cut(s) 372, 662, 766
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 7 cut(s) 179, 445, 639, 680, 714, 938, 1228
CviQI GTAC 3 cut(s) 372, 662, 766
DdeI CTNAG 2 cut(s) 502, 528
DpnI GATC 4 cut(s) 421, 684, 809, 1134
DpnII GATC 4 cut(s) 419, 682, 807, 1132
Eam1104I CTCTTC 3 cut(s) 36, 47, 1187
EarI CTCTTC 3 cut(s) 36, 47, 1187
Ecl136II GAGCTC 1 cut(s) 1016
Eco130I CCWWGG 3 cut(s) 335, 713, 1263
Eco24I GRGCYC 1 cut(s) 1018
Eco32I GATATC 2 cut(s) 303, 1093
Eco53kI GAGCTC 1 cut(s) 1016
Eco57I CTGAAG 3 cut(s) 203, 378, 954
Eco88I CYCGRG 1 cut(s) 1249
EcoICRI GAGCTC 1 cut(s) 1016
EcoRI GAATTC 1 cut(s) 1109
EcoRV GATATC 2 cut(s) 303, 1093
EcoT14I CCWWGG 3 cut(s) 335, 713, 1263
EcoT22I ATGCAT 1 cut(s) 803
EcoT38I GRGCYC 1 cut(s) 1018
ErhI CCWWGG 3 cut(s) 335, 713, 1263
FaeI CATG 7 cut(s) 182, 448, 642, 683, 717, 941, 1231
FaqI GGGAC 3 cut(s) 501, 635, 1307
FatI CATG 7 cut(s) 178, 444, 638, 679, 713, 937, 1227
FauI CCCGC 1 cut(s) 56
FbaI TGATCA 1 cut(s) 1132
FblI GTMKAC 1 cut(s) 876
Fnu4HI GCNGC 5 cut(s) 600, 629, 1045, 1048, 1160
FokI GGATG 6 cut(s) 627, 1097, 1161, 1162, 1280, 1301
FriOI GRGCYC 1 cut(s) 1018
Fsp4HI GCNGC 5 cut(s) 600, 629, 1045, 1048, 1160
FspBI CTAG 1 cut(s) 888
GluI GCNGC 5 cut(s) 600, 629, 1045, 1048, 1160
GsaI CCCAGC 1 cut(s) 646
Hin1II CATG 7 cut(s) 182, 448, 642, 683, 717, 941, 1231
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 7 cut(s) 7, 28, 441, 582, 782, 833, 1172
HphI GGTGA 3 cut(s) 134, 702, 1019
Hpy166II GTNNAC 5 cut(s) 64, 74, 312, 481, 877
Hpy188I TCNGA 4 cut(s) 222, 243, 697, 973
Hpy188III TCNNGA 6 cut(s) 143, 423, 989, 1070, 1146, 1297
Hpy8I GTNNAC 5 cut(s) 64, 74, 312, 481, 877
HpyAV CCTTC 4 cut(s) 604, 712, 995, 1178
HpyCH4III ACNGT 2 cut(s) 547, 1142
HpyCH4IV ACGT 4 cut(s) 624, 993, 1126, 1217
HpyCH4V TGCA 9 cut(s) 161, 434, 467, 628, 778, 801, 848, 1076, 1162
HpyF10VI GCNNNNNNNGC 1 cut(s) 634
HpyF3I CTNAG 2 cut(s) 502, 528
HpySE526I ACGT 4 cut(s) 624, 993, 1126, 1217
Hsp92II CATG 7 cut(s) 182, 448, 642, 683, 717, 941, 1231
Ksp22I TGATCA 1 cut(s) 1132
Kzo9I GATC 4 cut(s) 419, 682, 807, 1132
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 2 cut(s) 941, 1021
Lsp1109I GCAGC 5 cut(s) 586, 640, 1056, 1059, 1146
LweI GCATC 3 cut(s) 586, 1063, 1075
MaeI CTAG 1 cut(s) 888
MaeII ACGT 4 cut(s) 624, 993, 1126, 1217
MaeIII GTNAC 3 cut(s) 563, 933, 980
MalI GATC 4 cut(s) 421, 684, 809, 1134
MboI GATC 4 cut(s) 419, 682, 807, 1132
MboII GAAGA 9 cut(s) 23, 34, 665, 903, 1087, 1090, 1165, 1204, 1244
MhlI GDGCHC 3 cut(s) 85, 946, 1018
MluCI AATT 9 cut(s) 232, 324, 408, 761, 789, 1109, 1203, 1235, 1307
MlyI GAGTC 5 cut(s) 16, 22, 591, 776, 1166
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 8 cut(s) 195, 241, 402, 511, 652, 1188, 1245, 1258
Mph1103I ATGCAT 1 cut(s) 803
MseI TTAA 6 cut(s) 330, 396, 792, 804, 854, 1316
MspCI CTTAAG 1 cut(s) 395
Mva1269I GAATGC 2 cut(s) 469, 593
MwoI GCNNNNNNNGC 1 cut(s) 634
NcoI CCATGG 1 cut(s) 713
NdeII GATC 4 cut(s) 419, 682, 807, 1132
NlaIII CATG 7 cut(s) 182, 448, 642, 683, 717, 941, 1231
NmuCI GTSAC 1 cut(s) 563
NsiI ATGCAT 1 cut(s) 803
PaeR7I CTCGAG 1 cut(s) 1249
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 16
PctI GAATGC 2 cut(s) 469, 593
PfeI GAWTC 2 cut(s) 441, 833
PkrI GCNGC 5 cut(s) 601, 630, 1046, 1049, 1161
PleI GAGTC 5 cut(s) 15, 22, 590, 776, 1166
PpsI GAGTC 5 cut(s) 15, 22, 590, 776, 1166
Psp124BI GAGCTC 1 cut(s) 1018
PspFI CCCAGC 1 cut(s) 642
PspXI VCTCGAGB 1 cut(s) 1249
RsaI GTAC 3 cut(s) 373, 663, 767
RsaNI GTAC 3 cut(s) 372, 662, 766
SacI GAGCTC 1 cut(s) 1018
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 6 cut(s) 330, 396, 792, 804, 854, 1316
SatI GCNGC 5 cut(s) 600, 629, 1045, 1048, 1160
Sau3AI GATC 4 cut(s) 419, 682, 807, 1132
SchI GAGTC 5 cut(s) 16, 22, 591, 776, 1166
SduI GDGCHC 3 cut(s) 85, 946, 1018
SfaNI GCATC 3 cut(s) 586, 1063, 1075
Sfr274I CTCGAG 1 cut(s) 1249
SlaI CTCGAG 1 cut(s) 1249
SmlI CTYRAG 4 cut(s) 93, 395, 656, 1249
SmoI CTYRAG 4 cut(s) 93, 395, 656, 1249
Sse9I AATT 9 cut(s) 232, 324, 408, 761, 789, 1109, 1203, 1235, 1307
SsiI CCGC 1 cut(s) 49
SspMI CTAG 1 cut(s) 888
SstI GAGCTC 1 cut(s) 1018
StyI CCWWGG 3 cut(s) 335, 713, 1263
TaaI ACNGT 2 cut(s) 547, 1142
TaiI ACGT 4 cut(s) 627, 996, 1129, 1220
TaqI TCGA 4 cut(s) 580, 585, 813, 1250
TasI AATT 9 cut(s) 232, 324, 408, 761, 789, 1109, 1203, 1235, 1307
TatI WGTACW 1 cut(s) 765
TfiI GAWTC 2 cut(s) 441, 833
Tru1I TTAA 6 cut(s) 330, 396, 792, 804, 854, 1316
Tru9I TTAA 6 cut(s) 330, 396, 792, 804, 854, 1316
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 5 cut(s) 599, 628, 1044, 1047, 1159
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 6 cut(s) 139, 143, 281, 420, 1216, 1329
TspGWI ACGGA 1 cut(s) 8
TspRI CASTG 1 cut(s) 850
Vha464I CTTAAG 1 cut(s) 395
XapI RAATTY 4 cut(s) 324, 1109, 1235, 1307
XhoI CTCGAG 1 cut(s) 1249
XmiI GTMKAC 1 cut(s) 876
XspI CTAG 1 cut(s) 888
Zsp2I ATGCAT 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.