Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008769

Physical Location & Seq

Genomic Coordinates Forward (+)

21638581 .. 21638814

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0134100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGAGATCTCTCCCGGGAGGACTTGGGGATCGATAGTGAGGGAGATGAAGTCACCGAGGCCGTCGACGGCGCATCCGAGGAAGTCAAAGCCGGGGCCGAGGTTGGCGACGGTGGCGGGGCCGAAGGCCTTGACGGTGGCGGTGTCAAGGTACCGAAACAAGAGAGGAAAGAGAGGAGATGGCTGTGGTTTTGGAGAAGAGAGAGAGAGAGAGAGGGCCCAAAAAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_28

Protein Analysis

77

Amino Acids

8.5

Weight (kDa)

11.39

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04900
fragaria_vesca	FvH4_1g23291 FvH4_4g15840 FvH4_4g15840 FvH4_4g15840 FvH4_4g15840
malus_domestica	MD04G1008200.v1.1
prunus_persica	Prupe.1G006900_v2.0.a1 Prupe.1G006900_v2.0.a1 Prupe.1G006900_v2.0.a1 Prupe.1G006900_v2.0.a1
pyrus_communis	pycom04g00610
rosa_chinensis	RchiOBHm_Chr4g0415411
rosa_laevigata	RLG00000008072
rosa_multiflora	Rmu_sc0002402.1_g000004
rosa_roxburghii	Rroxscaffold_5G00359160
rosa_rugosa	Rorug04G0134100 Rorug04G0134200
rosa_samantha	Rh4AG194500 Rh4BG193200 Rh4CG205500 Rh4DG192200
rosa_wichuraiana	Rw4G016560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	2 cut(s)	116, 140
AclWI	GGATC	1 cut(s)	37
AfaI	GTAC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	37
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	5 cut(s)	59, 95, 119, 126, 216
ApaI	GGGCCC	1 cut(s)	220
Asp718I	GGTACC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	73
AspS9I	GGNCC	4 cut(s)	95, 119, 216, 217
AsuC2I	CCSGG	3 cut(s)	15, 16, 93
AsuHPI	GGTGA	1 cut(s)	45
AvaI	CYCGRG	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	220
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	2 cut(s)	46, 84
BcnI	CCSGG	3 cut(s)	15, 16, 93
BglII	AGATCT	1 cut(s)	6
Bme1390I	CCNGG	3 cut(s)	15, 16, 93
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	4 cut(s)	95, 119, 216, 217
BmiI	GGNNCC	4 cut(s)	96, 120, 152, 218
BmrFI	CCNGG	3 cut(s)	15, 16, 93
BmsI	GCATC	1 cut(s)	82
BpuMI	CCSGG	3 cut(s)	15, 16, 93
Bsa29I	ATCGAT	1 cut(s)	32
BsaJI	CCNNGG	5 cut(s)	14, 56, 77, 92, 98
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	5 cut(s)	14, 56, 77, 92, 98
BseGI	GGATG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	220
BshFI	GGCC	5 cut(s)	61, 97, 121, 128, 218
BshNI	GGYRCC	1 cut(s)	150
BshVI	ATCGAT	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	15, 92
BsnI	GGCC	5 cut(s)	61, 97, 121, 128, 218
BsoBI	CYCGRG	1 cut(s)	14
Bsp120I	GGGCCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	6, 29
BspACI	CCGC	2 cut(s)	116, 140
BspANI	GGCC	5 cut(s)	61, 97, 121, 128, 218
BspDI	ATCGAT	1 cut(s)	32
BspLI	GGNNCC	4 cut(s)	96, 120, 152, 218
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	150
BssECI	CCNNGG	5 cut(s)	14, 56, 77, 92, 98
BssMI	GATC	2 cut(s)	6, 29
Bst4CI	ACNGT	2 cut(s)	112, 136
Bst6I	CTCTTC	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	2 cut(s)	9, 32
BstMBI	GATC	2 cut(s)	6, 29
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstSCI	CCNGG	3 cut(s)	13, 14, 91
BstSLI	GKGCMC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	5 cut(s)	61, 97, 121, 128, 218
BsuTUI	ATCGAT	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	73
Cfr13I	GGNCC	4 cut(s)	95, 119, 216, 217
Cfr9I	CCCGGG	1 cut(s)	14
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	151
CviJI	RGCY	7 cut(s)	61, 91, 97, 121, 128, 183, 218
CviKI_1	RGCY	7 cut(s)	61, 91, 97, 121, 128, 183, 218
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	2 cut(s)	8, 31
DpnII	GATC	2 cut(s)	6, 29
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	220
FauI	CCCGC	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	65
FokI	GGATG	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	220
GlaI	GCGC	1 cut(s)	72
HaeIII	GGCC	5 cut(s)	61, 97, 121, 128, 218
HapII	CCGG	2 cut(s)	15, 92
HhaI	GCGC	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HpaII	CCGG	2 cut(s)	15, 92
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	78
Hpy8I	GTNNAC	1 cut(s)	66
Hpy99I	CGWCG	3 cut(s)	67, 70, 112
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	2 cut(s)	112, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HspAI	GCGC	1 cut(s)	71
KpnI	GGTACC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	6, 29
LpnPI	CCDG	2 cut(s)	28, 105
LweI	GCATC	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	2 cut(s)	8, 31
MboI	GATC	2 cut(s)	6, 29
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	220
MnlI	CCTC	8 cut(s)	12, 33, 51, 72, 93, 158, 167, 207
MspI	CCGG	2 cut(s)	15, 92
MspR9I	CCNGG	3 cut(s)	15, 16, 93
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	3 cut(s)	15, 16, 93
NdeII	GATC	2 cut(s)	6, 29
NlaIV	GGNNCC	4 cut(s)	96, 120, 152, 218
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PspN4I	GGNNCC	4 cut(s)	96, 120, 152, 218
PspOMI	GGGCCC	1 cut(s)	216
PspPI	GGNCC	4 cut(s)	95, 119, 216, 217
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SalI	GTCGAC	1 cut(s)	64
Sau3AI	GATC	2 cut(s)	6, 29
Sau96I	GGNCC	4 cut(s)	95, 119, 216, 217
ScrFI	CCNGG	3 cut(s)	15, 16, 93
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	2 cut(s)	104, 152
SfaNI	GCATC	1 cut(s)	82
SgrDI	CGTCGACG	1 cut(s)	64
SmaI	CCCGGG	1 cut(s)	16
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	2 cut(s)	116, 140
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	13, 14, 91
TaaI	ACNGT	2 cut(s)	112, 136
TaqI	TCGA	2 cut(s)	32, 65
TseFI	GTSAC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	62
TspMI	CCCGGG	1 cut(s)	14
XmaI	CCCGGG	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.