AT1G05180

E1 enzyme. E1 activates RUB1 NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
1498114 .. 1501953
3840 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05180.3

Sequence Viewer

Length: 1623 bp
ATGCAAGCAGTAAAAAGATCCAGGAGACATGTTGAAGAAGAGCCAACAATGGTAGAACCTAAAACCAAGTACGATCGTCAGCTCAGGATTTGGGGGGAGGTAGGTCAAGCGGCCTTGGAAGAAGCGAGTATCTGTTTACTCAATTGTGGCCCTACTGGTTCCGAGGCTTTGAAGAATCTCGTACTTGGTGGTGTTGGTAGCATCACCGTTGTTGATGGATCTAAGGTTCAATTTGGTGACCTTGGGAACAATTTCATGGTCGATGCGAAGAGTGTTGGCCAATCAAAAGCCAAATCTGTTTGTGCGTTTCTCCAAGAGCTTAATGATTCTGTTAACGCCAAGTTTATTGAGGAGAATCCAGACACGTTGATTACTACTAACCCATCTTTCTTCTCTCAGTTCACTCTCGTTATAGCCACTCAGCTGGTGGAAGATTCAATGTTGAAACTTGATAGAATCTGTCGAGATGCAAACGTTAAGTTGGTTTTGGTTCGCTCTTATGGCCTTGCTGGGTTTGTTCGCATCTCTGTAAAGGAGCACCCCATAATTGACTCAAAACCTGATCATTTTCTTGACGACCTCCGCCTGAATAATCCATGGCCTGAACTCAAGAGTTTTGTGGAGACCATTGATCTGAATGTATCAGAGCCGGCCGCTGCACATAAGCACATACCTTACGTCGTCATTCTTGTAAAGATGGCTGAGGAGTGGGCTCAATCCCATAGTGGTAATCTTCCCTCAACCAGGGAAGAGAAAAAAGAGTTTAAGGATTTGGTTAAGTCCAAGATGGTATCTACGGATGAAGATAACTACAAAGAAGCCATTGAAGCCGCTTTCAAAGTTTTTGCTCCTCGAGGAATCAGCTCAGAGGTTCAAAAATTAATTAATGATAGTTGTGCTGAAGTGAATTCAAACTCCTCAGCTTTTTGGGTGATGGTAGCGGCTCTGAAGGAGTTTGTTTTAAATGAAGGTGGTGGAGAGGCACCCCTTGAAGGTTCTATACCAGATATGACCTCTTCAACAGAACACTATATCAATTTGCAGAAAATCTATTTAGCCAAAGCCGAGGCTGATTTTCTTGTCATTGAGGAACGAGTTAAAAACATTTTAAAGAAAATCGGTCGAGATCCGAGCAGCATCCCAAAACCAACAATCAAGAGCTTCTGCAAGAATGCAAGGAAACTTAAATTGTGCAGATATCGTATGGTAGAGGACGAGTTCAGAAATCCTTCTGTAACTGAAATTCAAAAGTATTTAGCGGACGAGGATTACAGTGGTGCAATGGGATTTTATATTCTTCTTAGAGCTGCGGACAGATTTGCTGCCAACTATAACAAGTTTCCTGGGCAGTTTGATGGAGGAATGGATGAGGACATTTCTCGATTAAAAACTACTGCCTTGAGTCTTCTTACCGACTTGGGCTGTAACGGCTCAGTACTCCCAGATGACCTTATCCATGAGATGTGTCGCTTTGGTGCCTCAGAGATTCATGTGGTTTCTGCCTTTGTTGGAGGAATCGCATCTCAAGAAGTCATCAAGCTTGTCACAAAGCAGTTTGTTCCGATGTTGGGGACTTACATCTTCAATGGCATTGATCACAAGTCTCAGTTATTGAAATTGTAG

Protein Analysis

540

Amino Acids

60.03

Weight (kDa)

5.65

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 852
AccB1I GGYRCC 2 cut(s) 982, 1475
AciI CCGC 7 cut(s) 110, 583, 654, 831, 941, 1259, 1310
AclI AACGTT 1 cut(s) 474
AclWI GGATC 3 cut(s) 12, 226, 1121
AcoI YGGCCR 2 cut(s) 277, 651
AcsI RAATTY 2 cut(s) 907, 1242
AcuI CTGAAG 2 cut(s) 921, 968
AfaI GTAC 3 cut(s) 71, 183, 1437
AfiI CCNNNNNNNGG 3 cut(s) 744, 992, 1568
AflIII ACRYGT 2 cut(s) 28, 363
AjnI CCWGG 3 cut(s) 20, 743, 1342
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
AluBI AGCT 8 cut(s) 82, 319, 424, 864, 923, 1161, 1307, 1540
AluI AGCT 8 cut(s) 82, 319, 424, 864, 923, 1161, 1307, 1540
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 3 cut(s) 19, 617, 1608
AlwI GGATC 3 cut(s) 12, 226, 1121
Ama87I CYCGRG 1 cut(s) 852
AoxI GGCC 6 cut(s) 111, 148, 277, 502, 599, 651
ApeKI GCWGC 4 cut(s) 656, 1134, 1307, 1322
ApoI RAATTY 2 cut(s) 907, 1242
AseI ATTAAT 2 cut(s) 881, 885
Asp700I GAANNNNTTC 2 cut(s) 251, 1228
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 196, 248, 943
AvaI CYCGRG 1 cut(s) 852
BalI TGGCCA 1 cut(s) 279
BanI GGYRCC 2 cut(s) 982, 1475
BanII GRGCYC 1 cut(s) 715
BarI GAAGNNNNNNTAC 2 cut(s) 984, 1016
BbsI GAAGAC 1 cut(s) 1397
Bbv12I GWGCWC 1 cut(s) 540
BbvCI CCTCAGC 2 cut(s) 702, 919
BbvI GCAGC 4 cut(s) 643, 1146, 1294, 1309
BccI CCATC 6 cut(s) 209, 391, 691, 781, 928, 1349
BceAI ACGGC 1 cut(s) 1444
BciT130I CCWGG 3 cut(s) 22, 745, 1344
BclI TGATCA 2 cut(s) 562, 1594
BcoDI GTCTC 3 cut(s) 19, 617, 1608
BisI GCNGC 8 cut(s) 111, 654, 657, 831, 942, 1135, 1308, 1323
BlsI GCNGC 8 cut(s) 112, 655, 658, 832, 943, 1136, 1309, 1324
BmcAI AGTACT 1 cut(s) 1437
Bme1390I CCNGG 3 cut(s) 22, 745, 1344
BmeT110I CYCGRG 1 cut(s) 852
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 3 cut(s) 160, 984, 1477
BmrFI CCNGG 3 cut(s) 22, 745, 1344
BmsI GCATC 6 cut(s) 210, 253, 457, 531, 1146, 1529
BpiI GAAGAC 1 cut(s) 1397
Bpu10I CCTNAGC 3 cut(s) 83, 702, 919
BpuEI CTTGAG 3 cut(s) 593, 1420, 1509
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 7 cut(s) 114, 162, 241, 596, 744, 1065, 1343
Bsc4I CCNNNNNNNGG 3 cut(s) 744, 992, 1568
Bse118I RCCGGY 1 cut(s) 649
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 1287
BseBI CCWGG 3 cut(s) 22, 745, 1344
BseDI CCNNGG 7 cut(s) 114, 162, 241, 596, 744, 1065, 1343
BseGI GGATG 3 cut(s) 805, 1137, 1372
BseLI CCNNNNNNNGG 3 cut(s) 744, 992, 1568
BseMI GCAATG 1 cut(s) 1287
BseMII CTCAG 9 cut(s) 97, 410, 434, 693, 879, 933, 1446, 1494, 1619
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 4 cut(s) 365, 719, 840, 907
BseX3I CGGCCG 1 cut(s) 651
BseXI GCAGC 4 cut(s) 643, 1146, 1294, 1309
BseYI CCCAGC 1 cut(s) 509
BsgI GTGCAG 2 cut(s) 642, 1213
Bsh1285I CGRYCG 3 cut(s) 76, 654, 1123
BshFI GGCC 6 cut(s) 113, 150, 279, 504, 601, 653
BshNI GGYRCC 2 cut(s) 982, 1475
BsiEI CGRYCG 3 cut(s) 76, 654, 1123
BsiHKAI GWGCWC 1 cut(s) 540
BsiHKCI CYCGRG 1 cut(s) 852
BsiSI CCGG 1 cut(s) 650
BslFI GGGAC 1 cut(s) 1585
BslI CCNNNNNNNGG 3 cut(s) 744, 992, 1568
BsmAI GTCTC 3 cut(s) 19, 617, 1608
BsmFI GGGAC 1 cut(s) 1585
BsmI GAATGC 1 cut(s) 1177
BsnI GGCC 6 cut(s) 113, 150, 279, 504, 601, 653
Bso31I GGTCTC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 852
Bsp1286I GDGCHC 2 cut(s) 540, 715
Bsp143I GATC 7 cut(s) 17, 73, 218, 562, 631, 1126, 1594
Bsp19I CCATGG 1 cut(s) 596
BspACI CCGC 7 cut(s) 110, 583, 654, 831, 941, 1259, 1310
BspANI GGCC 6 cut(s) 113, 150, 279, 504, 601, 653
BspCNI CTCAG 9 cut(s) 96, 409, 433, 694, 878, 932, 1445, 1493, 1618
BspLI GGNNCC 3 cut(s) 160, 984, 1477
BspPI GGATC 3 cut(s) 12, 226, 1121
BspQI GCTCTTC 1 cut(s) 33
BspT107I GGYRCC 2 cut(s) 982, 1475
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 1287
BsrFI RCCGGY 1 cut(s) 649
BsrI ACTGG 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 649
BssECI CCNNGG 7 cut(s) 114, 162, 241, 596, 744, 1065, 1343
BssMI GATC 7 cut(s) 17, 73, 218, 562, 631, 1126, 1594
BssT1I CCWWGG 3 cut(s) 114, 241, 596
Bst2UI CCWGG 3 cut(s) 22, 745, 1344
Bst4CI ACNGT 2 cut(s) 208, 1274
Bst6I CTCTTC 4 cut(s) 33, 263, 744, 1021
BstC8I GCNNGC 2 cut(s) 6, 651
BstDSI CCRYGG 1 cut(s) 596
BstEII GGTNACC 1 cut(s) 236
BstENI CCTNNNNNAGG 1 cut(s) 742
BstF5I GGATG 3 cut(s) 805, 1137, 1372
BstKTI GATC 7 cut(s) 20, 76, 221, 565, 634, 1129, 1597
BstMAI GTCTC 3 cut(s) 19, 617, 1608
BstMBI GATC 7 cut(s) 17, 73, 218, 562, 631, 1126, 1594
BstMCI CGRYCG 3 cut(s) 76, 654, 1123
BstMWI GCNNNNNNNGC 3 cut(s) 501, 827, 1428
BstNI CCWGG 3 cut(s) 22, 745, 1344
BstNSI RCATGY 1 cut(s) 32
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 3 cut(s) 20, 743, 1342
BstV1I GCAGC 4 cut(s) 643, 1146, 1294, 1309
BstV2I GAAGAC 1 cut(s) 1397
BstX2I RGATCY 3 cut(s) 17, 218, 1126
BstXI CCANNNNNNTGG 1 cut(s) 424
BstYI RGATCY 3 cut(s) 17, 218, 1126
BstZI CGGCCG 1 cut(s) 651
BsuRI GGCC 6 cut(s) 113, 150, 279, 504, 601, 653
BtgI CCRYGG 1 cut(s) 596
BtsCI GGATG 3 cut(s) 805, 1137, 1372
BtsIMutI CAGTG 1 cut(s) 1279
Cac8I GCNNGC 2 cut(s) 6, 651
Cfr10I RCCGGY 1 cut(s) 649
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 3 cut(s) 70, 182, 1436
CviAII CATG 5 cut(s) 29, 256, 597, 1457, 1490
CviQI GTAC 3 cut(s) 70, 182, 1436
DpnI GATC 7 cut(s) 19, 75, 220, 564, 633, 1128, 1596
DpnII GATC 7 cut(s) 17, 73, 218, 562, 631, 1126, 1594
DraI TTTAAA 2 cut(s) 963, 1110
EaeI YGGCCR 2 cut(s) 277, 651
EagI CGGCCG 1 cut(s) 651
Eam1104I CTCTTC 4 cut(s) 33, 263, 744, 1021
EarI CTCTTC 4 cut(s) 33, 263, 744, 1021
EciI GGCGGA 1 cut(s) 572
EclXI CGGCCG 1 cut(s) 651
Eco130I CCWWGG 3 cut(s) 114, 241, 596
Eco24I GRGCYC 1 cut(s) 715
Eco31I GGTCTC 1 cut(s) 617
Eco32I GATATC 1 cut(s) 1199
Eco52I CGGCCG 1 cut(s) 651
Eco57I CTGAAG 2 cut(s) 921, 968
Eco88I CYCGRG 1 cut(s) 852
Eco91I GGTNACC 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 742
EcoO65I GGTNACC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 907
EcoRII CCWGG 3 cut(s) 20, 743, 1342
EcoRV GATATC 1 cut(s) 1199
EcoT14I CCWWGG 3 cut(s) 114, 241, 596
EcoT38I GRGCYC 1 cut(s) 715
ErhI CCWWGG 3 cut(s) 114, 241, 596
FaeI CATG 5 cut(s) 32, 259, 600, 1460, 1493
FaqI GGGAC 1 cut(s) 1585
FatI CATG 5 cut(s) 28, 255, 596, 1456, 1489
FbaI TGATCA 2 cut(s) 562, 1594
Fnu4HI GCNGC 8 cut(s) 111, 654, 657, 831, 942, 1135, 1308, 1323
FokI GGATG 3 cut(s) 812, 1124, 1379
FriOI GRGCYC 1 cut(s) 715
Fsp4HI GCNGC 8 cut(s) 111, 654, 657, 831, 942, 1135, 1308, 1323
GluI GCNGC 8 cut(s) 111, 654, 657, 831, 942, 1135, 1308, 1323
GsaI CCCAGC 1 cut(s) 513
HaeIII GGCC 6 cut(s) 113, 150, 279, 504, 601, 653
HapII CCGG 1 cut(s) 650
Hin1II CATG 5 cut(s) 32, 259, 600, 1460, 1493
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 1538
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 1 cut(s) 650
HphI GGTGA 3 cut(s) 196, 248, 943
Hpy166II GTNNAC 3 cut(s) 137, 334, 402
Hpy188I TCNGA 9 cut(s) 163, 636, 646, 868, 948, 1131, 1223, 1483, 1563
Hpy188III TCNNGA 9 cut(s) 85, 359, 464, 572, 610, 1124, 1156, 1380, 1526
Hpy8I GTNNAC 3 cut(s) 137, 334, 402
Hpy99I CGWCG 1 cut(s) 683
HpyAV CCTTC 4 cut(s) 943, 962, 986, 1239
HpyCH4III ACNGT 2 cut(s) 208, 1274
HpyCH4IV ACGT 3 cut(s) 365, 474, 678
HpyCH4V TGCA 8 cut(s) 4, 470, 659, 1042, 1167, 1175, 1194, 1280
HpyF10VI GCNNNNNNNGC 3 cut(s) 501, 827, 1428
HpySE526I ACGT 3 cut(s) 365, 474, 678
Hsp92II CATG 5 cut(s) 32, 259, 600, 1460, 1493
KroI GCCGGC 1 cut(s) 649
KroNI GCCGGC 1 cut(s) 651
Ksp22I TGATCA 2 cut(s) 562, 1594
KspAI GTTAAC 1 cut(s) 334
Kzo9I GATC 7 cut(s) 17, 73, 218, 562, 631, 1126, 1594
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 535, 853
Lsp1109I GCAGC 4 cut(s) 643, 1146, 1294, 1309
LweI GCATC 6 cut(s) 210, 253, 457, 531, 1146, 1529
MaeII ACGT 3 cut(s) 365, 474, 678
MaeIII GTNAC 4 cut(s) 236, 1234, 1424, 1543
MalI GATC 7 cut(s) 19, 75, 220, 564, 633, 1128, 1596
MboI GATC 7 cut(s) 17, 73, 218, 562, 631, 1126, 1594
MfeI CAATTG 1 cut(s) 142
MflI RGATCY 3 cut(s) 17, 218, 1126
MhlI GDGCHC 2 cut(s) 540, 715
MlsI TGGCCA 1 cut(s) 279
MluNI TGGCCA 1 cut(s) 279
MlyI GAGTC 2 cut(s) 545, 1411
MmeI TCCRAC 1 cut(s) 1489
Mox20I TGGCCA 1 cut(s) 279
MroNI GCCGGC 1 cut(s) 649
MroXI GAANNNNTTC 2 cut(s) 251, 1228
MscI TGGCCA 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 2 cut(s) 424, 656
MspI CCGG 1 cut(s) 650
MspR9I CCNGG 3 cut(s) 22, 745, 1344
MunI CAATTG 1 cut(s) 142
Mva1269I GAATGC 1 cut(s) 1177
MvaI CCWGG 3 cut(s) 22, 745, 1344
MwoI GCNNNNNNNGC 3 cut(s) 501, 827, 1428
NaeI GCCGGC 1 cut(s) 651
NcoI CCATGG 1 cut(s) 596
NdeII GATC 7 cut(s) 17, 73, 218, 562, 631, 1126, 1594
NgoMIV GCCGGC 1 cut(s) 649
NlaIII CATG 5 cut(s) 32, 259, 600, 1460, 1493
NlaIV GGNNCC 3 cut(s) 160, 984, 1477
NmeAIII GCCGAG 1 cut(s) 1090
NmuCI GTSAC 2 cut(s) 236, 1543
NspI RCATGY 1 cut(s) 32
PacI TTAATTAA 1 cut(s) 885
PaeR7I CTCGAG 1 cut(s) 852
PciI ACATGT 1 cut(s) 28
PciSI GCTCTTC 1 cut(s) 33
PctI GAATGC 1 cut(s) 1177
PdiI GCCGGC 1 cut(s) 651
PdmI GAANNNNTTC 2 cut(s) 251, 1228
PfeI GAWTC 8 cut(s) 175, 326, 355, 434, 456, 858, 1486, 1515
PfoI TCCNGGA 1 cut(s) 20
PkrI GCNGC 8 cut(s) 112, 655, 658, 832, 943, 1136, 1309, 1324
Ple19I CGATCG 1 cut(s) 76
PleI GAGTC 2 cut(s) 545, 1410
PpsI GAGTC 2 cut(s) 545, 1410
PscI ACATGT 1 cut(s) 28
PshBI ATTAAT 2 cut(s) 881, 885
Psp1406I AACGTT 1 cut(s) 474
Psp6I CCWGG 3 cut(s) 20, 743, 1342
PspEI GGTNACC 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 3 cut(s) 20, 743, 1342
PspN4I GGNNCC 3 cut(s) 160, 984, 1477
PspPI GGNCC 1 cut(s) 149
PspXI VCTCGAGB 1 cut(s) 852
PsuI RGATCY 3 cut(s) 17, 218, 1126
PvuI CGATCG 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 424
RsaI GTAC 3 cut(s) 71, 183, 1437
RsaNI GTAC 3 cut(s) 70, 182, 1436
SapI GCTCTTC 1 cut(s) 33
SatI GCNGC 8 cut(s) 111, 654, 657, 831, 942, 1135, 1308, 1323
Sau3AI GATC 7 cut(s) 17, 73, 218, 562, 631, 1126, 1594
Sau96I GGNCC 1 cut(s) 149
ScaI AGTACT 1 cut(s) 1437
SchI GAGTC 2 cut(s) 545, 1411
ScrFI CCNGG 3 cut(s) 22, 745, 1344
SduI GDGCHC 2 cut(s) 540, 715
SfaNI GCATC 6 cut(s) 210, 253, 457, 531, 1146, 1529
Sfr274I CTCGAG 1 cut(s) 852
SlaI CTCGAG 1 cut(s) 852
SmlI CTYRAG 4 cut(s) 608, 852, 1399, 1524
SmoI CTYRAG 4 cut(s) 608, 852, 1399, 1524
SsiI CCGC 7 cut(s) 110, 583, 654, 831, 941, 1259, 1310
StyD4I CCNGG 3 cut(s) 20, 743, 1342
StyI CCWWGG 3 cut(s) 114, 241, 596
TaaI ACNGT 2 cut(s) 208, 1274
TaiI ACGT 3 cut(s) 368, 477, 681
TaqI TCGA 5 cut(s) 261, 463, 853, 1123, 1381
TaqII GACCGA 1 cut(s) 1109
TatI WGTACW 1 cut(s) 1435
TauI GCSGC 4 cut(s) 113, 656, 833, 944
TfiI GAWTC 8 cut(s) 175, 326, 355, 434, 456, 858, 1486, 1515
TscAI CASTG 1 cut(s) 1279
TseFI GTSAC 2 cut(s) 236, 1543
TseI GCWGC 4 cut(s) 656, 1134, 1307, 1322
Tsp45I GTSAC 2 cut(s) 236, 1543
TspDTI ATGAA 4 cut(s) 244, 816, 981, 1478
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 1 cut(s) 1279
VspI ATTAAT 2 cut(s) 881, 885
XagI CCTNNNNNAGG 1 cut(s) 742
XapI RAATTY 2 cut(s) 907, 1242
XceI RCATGY 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 424
XhoI CTCGAG 1 cut(s) 852
XmnI GAANNNNTTC 2 cut(s) 251, 1228
ZrmI AGTACT 1 cut(s) 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.