Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008502

Physical Location & Seq

Genomic Coordinates Forward (+)

60668647 .. 60671891

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0475500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCCTTCACGTCCAAAAAAAAAAGCAACAAAGAAGAAACTGAAGCATTCCACAGCACAACCCATCGTCCATCACTCTCTACCCACCATTCAAATCCAAGTGCAAGAAAGTTTTGTGGAAACTAATTCAGAAGTGAAGTTTTGTTATGAGAAAGAATTAAGTGGTTGTGAGACTGCTTCTGTGACTTGTCAAGACCGTTCTTCCCGTCAATACTTAGCTGAAGAGGAACAAGAGACGCGGAAACTTTCTGTAGATCATCACCAAATGGCAGATTCATCAAACGGAAAGTTAGAGGAGACTCGGAAAGTTCAAGAGGGTGAAGTAGTTGAATCTGTAAGGGATATAGCTATTGATGACTCTTCGGTAGAGCATGCGAAAAAGGCCCATGAAGAGCCGGCTGAAGCTGCTGAGGAGAGTACTGAAGTGGTGGGATCGGGAGAAGTAGTGGAAAAGAAAGAAGAGGATGTTGTGGAGACAGAAACTTCTGTTGTTGATGATGTTGTTGAACCAGAAGAAAAGGAAAAGGAGGAGGAGGAGGAGGAGAAGCAATATGTGCCATCTGTGGATGAGACAGATGGACCTTCTCCAGTTGTGGAAGATGTTGTGCCAGAGGAGATTGAGGAAAAGACATCAACAGATTTGGTCTCTAATGGGGTTGAGGAATCAACATTGCCATCTTTGAGTGAGGACATGACGAATGCGCTGTCGAAAGGAATTGAAGAAACCGAAGTGCCTCGTTCAGATGAGAAGGAGGAGGAGGTTGTTCCAGCTGTAGAAGTAAAATTGCCAGTTGTTGAAGAGACTAGTACTGGGGAGTCATCAGGTGCTGATTACAAGGTAACTGGTGAAAGTGTTGATGACGATTCATCGAAACAGTCGCCTGAGGTTCCAGTTTCTCCTCCAGTTGAATCAATTGATGCCGGAGAAGAGTATGGCAAGCGTGAGATATCTGAAACCGCAGAAAATCCGTCTATTGTATCTGTGACTAGAGCTCCCCTGCAACCAACTTCATGGAGGAGTTGTTGTGGACTTTTTGAAGTTCTGCGCCGATCTGATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008641 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010035 GO:0010252 GO:0016043 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0022402 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0034641 GO:0035825 GO:0036211 GO:0042221 GO:0042579 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0046483 GO:0048285 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0099402 GO:0140013 GO:1901360 GO:1901564 GO:1901700 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

ThiF

Protein Analysis

353

Amino Acids

38.98

Weight (kDa)

4.4

Isoelectric Point (pI)

70.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05180 AT1G05180 AT1G05180 AT2G32410
fragaria_vesca	FvH4_6g43170 FvH4_6g43170 FvH4_6g43170
malus_domestica	MD09G1109000.v1.1 MD17G1097000.v1.1
prunus_persica	Prupe.3G217100_v2.0.a1
pyrus_communis	pycom09g03150 pycom17g09280
rosa_chinensis	RchiOBHm_Chr2g0159271
rosa_laevigata	RLG00000021149
rosa_multiflora	Rmu_sc0016200.1_g000007
rosa_roxburghii	Rroxscaffold_2G00090640
rosa_rugosa	Rorug02G0475500 Rorug02G0475500 Rorug02G0475600
rosa_samantha	Rh2AG541900 Rh2CG524600 Rh2DG564300
rosa_wichuraiana	Rw2G044820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	238
AciI	CCGC	2 cut(s)	238, 957
AclWI	GGATC	1 cut(s)	439
AcuI	CTGAAG	4 cut(s)	62, 240, 420, 441
AfaI	GTAC	2 cut(s)	418, 808
AgsI	TTSAA	8 cut(s)	92, 311, 329, 506, 719, 797, 908, 1037
AhlI	ACTAGT	1 cut(s)	803
AjiI	CACGTC	1 cut(s)	11
AluBI	AGCT	5 cut(s)	218, 347, 404, 770, 992
AluI	AGCT	5 cut(s)	218, 347, 404, 770, 992
Alw21I	GWGCWC	1 cut(s)	994
Alw26I	GTCTC	7 cut(s)	164, 227, 290, 467, 563, 649, 794
AlwI	GGATC	1 cut(s)	439
AlwNI	CAGNNNCTG	1 cut(s)	827
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	404
ArsI	GACNNNNNNTTYG	2 cut(s)	689, 721
AspLEI	GCGC	2 cut(s)	703, 1047
AspS9I	GGNCC	2 cut(s)	382, 578
AsuHPI	GGTGA	3 cut(s)	251, 329, 857
AvaII	GGWCC	1 cut(s)	578
AxyI	CCTNAGG	1 cut(s)	882
BanII	GRGCYC	1 cut(s)	994
Bbv12I	GWGCWC	1 cut(s)	994
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	5 cut(s)	71, 78, 565, 569, 682
BcoDI	GTCTC	7 cut(s)	164, 227, 290, 467, 563, 649, 794
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	2 cut(s)	804, 987
BfmI	CTRYAG	2 cut(s)	249, 771
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
BmcAI	AGTACT	2 cut(s)	418, 808
Bme18I	GGWCC	1 cut(s)	578
BmgBI	CACGTC	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	382, 578
BmiI	GGNNCC	1 cut(s)	888
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	1 cut(s)	907
BmuI	ACTGGG	1 cut(s)	819
BpmI	CTGGAG	2 cut(s)	570, 885
Bpu10I	CCTNAGC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	649
BsaXI	ACNNNNNCTCC	8 cut(s)	429, 459, 976, 1006, 1006, 1009, 1036, 1039
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	6 cut(s)	587, 788, 814, 847, 890, 902
Bse21I	CCTNAGG	1 cut(s)	882
Bse3DI	GCAATG	1 cut(s)	668
BseGI	GGATG	2 cut(s)	469, 571
BseMI	GCAATG	1 cut(s)	668
BseMII	CTCAG	2 cut(s)	399, 873
BseNI	ACTGG	6 cut(s)	587, 788, 814, 847, 890, 902
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	994
BsiSI	CCGG	2 cut(s)	395, 921
BsmAI	GTCTC	7 cut(s)	164, 227, 290, 467, 563, 649, 794
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	2 cut(s)	46, 703
BsnI	GGCC	1 cut(s)	383
Bso31I	GGTCTC	1 cut(s)	649
Bsp1286I	GDGCHC	1 cut(s)	994
Bsp143I	GATC	3 cut(s)	253, 431, 1049
BspACI	CCGC	2 cut(s)	238, 957
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	2 cut(s)	400, 874
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	888
BspPI	GGATC	1 cut(s)	439
BspQI	GCTCTTC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	668
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	6 cut(s)	587, 788, 814, 847, 890, 902
BssAI	RCCGGY	1 cut(s)	394
BssMI	GATC	3 cut(s)	253, 431, 1049
Bst4CI	ACNGT	2 cut(s)	197, 876
Bst6I	CTCTTC	6 cut(s)	216, 364, 384, 453, 792, 921
BstAPI	GCANNNNNTGC	1 cut(s)	553
BstC8I	GCNNGC	3 cut(s)	372, 396, 938
BstDEI	CTNAG	3 cut(s)	214, 408, 882
BstF5I	GGATG	2 cut(s)	469, 571
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	703, 1047
BstKTI	GATC	3 cut(s)	256, 434, 1052
BstMAI	GTCTC	7 cut(s)	164, 227, 290, 467, 563, 649, 794
BstMBI	GATC	3 cut(s)	253, 431, 1049
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 404, 553
BstNSI	RCATGY	1 cut(s)	374
BstSFI	CTRYAG	2 cut(s)	249, 771
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	1011
Bsu36I	CCTNAGG	1 cut(s)	882
BsuRI	GGCC	1 cut(s)	383
BtrI	CACGTC	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	469, 571
Cac8I	GCNNGC	3 cut(s)	372, 396, 938
CaiI	CAGNNNCTG	1 cut(s)	827
CfoI	GCGC	2 cut(s)	703, 1047
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	382, 578
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	417, 807
CviAII	CATG	4 cut(s)	371, 386, 691, 1011
CviJI	RGCY	8 cut(s)	218, 347, 383, 394, 398, 404, 770, 992
CviKI_1	RGCY	8 cut(s)	218, 347, 383, 394, 398, 404, 770, 992
CviQI	GTAC	2 cut(s)	417, 807
DdeI	CTNAG	3 cut(s)	214, 408, 882
DpnI	GATC	3 cut(s)	255, 433, 1051
DpnII	GATC	3 cut(s)	253, 431, 1049
Eam1104I	CTCTTC	6 cut(s)	216, 364, 384, 453, 792, 921
EarI	CTCTTC	6 cut(s)	216, 364, 384, 453, 792, 921
Ecl136II	GAGCTC	1 cut(s)	992
Eco24I	GRGCYC	1 cut(s)	994
Eco31I	GGTCTC	1 cut(s)	649
Eco32I	GATATC	1 cut(s)	948
Eco47I	GGWCC	1 cut(s)	578
Eco53kI	GAGCTC	1 cut(s)	992
Eco57I	CTGAAG	4 cut(s)	62, 240, 420, 441
Eco81I	CCTNAGG	1 cut(s)	882
EcoICRI	GAGCTC	1 cut(s)	992
EcoRV	GATATC	1 cut(s)	948
EcoT38I	GRGCYC	1 cut(s)	994
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	374, 389, 694, 1014
FaiI	YATR	8 cut(s)	147, 344, 372, 387, 552, 692, 933, 1012
FatI	CATG	4 cut(s)	370, 385, 690, 1010
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	2 cut(s)	476, 578
FriOI	GRGCYC	1 cut(s)	994
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	2 cut(s)	804, 987
GlaI	GCGC	2 cut(s)	702, 1046
GluI	GCNGC	1 cut(s)	405
GsuI	CTGGAG	2 cut(s)	570, 885
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	2 cut(s)	395, 921
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	2 cut(s)	703, 1047
Hin1II	CATG	4 cut(s)	374, 389, 694, 1014
Hin6I	GCGC	2 cut(s)	701, 1045
HinP1I	GCGC	2 cut(s)	701, 1045
HinfI	GANTC	8 cut(s)	272, 298, 329, 356, 662, 815, 863, 908
HpaII	CCGG	2 cut(s)	395, 921
HphI	GGTGA	3 cut(s)	251, 329, 857
Hpy166II	GTNNAC	1 cut(s)	1028
Hpy188I	TCNGA	5 cut(s)	130, 303, 742, 952, 1054
Hpy188III	TCNNGA	3 cut(s)	191, 311, 435
Hpy8I	GTNNAC	1 cut(s)	1028
HpyAV	CCTTC	3 cut(s)	15, 591, 742
HpyCH4III	ACNGT	2 cut(s)	197, 876
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	103, 1000
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 404, 553
HpyF3I	CTNAG	3 cut(s)	214, 408, 882
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	4 cut(s)	374, 389, 694, 1014
HspAI	GCGC	2 cut(s)	701, 1045
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	253, 431, 1049
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	997
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	907
MaeI	CTAG	2 cut(s)	804, 987
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	3 cut(s)	181, 838, 982
MalI	GATC	3 cut(s)	255, 433, 1051
MboI	GATC	3 cut(s)	253, 431, 1049
MfeI	CAATTG	1 cut(s)	912
MhlI	GDGCHC	1 cut(s)	994
MluCI	AATT	5 cut(s)	124, 155, 714, 782, 912
MlyI	GAGTC	3 cut(s)	292, 350, 824
MroNI	GCCGGC	1 cut(s)	394
MseI	TTAA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	770
MspI	CCGG	2 cut(s)	395, 921
MunI	CAATTG	1 cut(s)	912
Mva1269I	GAATGC	2 cut(s)	46, 703
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	380, 404, 553
NaeI	GCCGGC	1 cut(s)	396
NdeII	GATC	3 cut(s)	253, 431, 1049
NgoMIV	GCCGGC	1 cut(s)	394
NlaIII	CATG	4 cut(s)	374, 389, 694, 1014
NlaIV	GGNNCC	1 cut(s)	888
NmuCI	GTSAC	2 cut(s)	181, 982
NspI	RCATGY	1 cut(s)	374
PaeI	GCATGC	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	384
PctI	GAATGC	2 cut(s)	46, 703
PdiI	GCCGGC	1 cut(s)	396
PfeI	GAWTC	5 cut(s)	272, 329, 662, 863, 908
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	3 cut(s)	292, 350, 823
PpsI	GAGTC	3 cut(s)	292, 350, 823
Psp124BI	GAGCTC	1 cut(s)	994
PspN4I	GGNNCC	1 cut(s)	888
PspPI	GGNCC	2 cut(s)	382, 578
PstNI	CAGNNNCTG	1 cut(s)	827
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	418, 808
RsaNI	GTAC	2 cut(s)	417, 807
SacI	GAGCTC	1 cut(s)	994
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	3 cut(s)	253, 431, 1049
Sau96I	GGNCC	2 cut(s)	382, 578
ScaI	AGTACT	2 cut(s)	418, 808
SchI	GAGTC	3 cut(s)	292, 350, 824
SduI	GDGCHC	1 cut(s)	994
SfaNI	GCATC	1 cut(s)	907
SfcI	CTRYAG	2 cut(s)	249, 771
SinI	GGWCC	1 cut(s)	578
SpeI	ACTAGT	1 cut(s)	803
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	5 cut(s)	124, 155, 714, 782, 912
SsiI	CCGC	2 cut(s)	238, 957
SspMI	CTAG	2 cut(s)	804, 987
SstI	GAGCTC	1 cut(s)	994
TaaI	ACNGT	2 cut(s)	197, 876
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	707, 869
TasI	AATT	5 cut(s)	124, 155, 714, 782, 912
TatI	WGTACW	2 cut(s)	416, 806
TfiI	GAWTC	5 cut(s)	272, 329, 662, 863, 908
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	181, 982
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	2 cut(s)	181, 982
TspDTI	ATGAA	4 cut(s)	264, 402, 855, 999
TspGWI	ACGGA	2 cut(s)	297, 957
VpaK11BI	GGWCC	1 cut(s)	578
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	2 cut(s)	804, 987
ZrmI	AGTACT	2 cut(s)	418, 808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.