Rmu_sc0016200.1_g000007

Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1 NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016200.1
Physical Location & Seq
Reverse (-)
20820 .. 25819
5000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016200.1_g000007.1.cds

Sequence Viewer

Length: 1614 bp
atggctgaacccaaaaccaaatacgatcgtcagctcagaatctggggcgagcaaggccaaacagcgctcgagaaagccagcgtttgcttactcaattgcggccctactggctccgaaaccctcaagaacctcgttctcggcggcgtcggaagcatcaccgtcattgatggatctaaagtcgaatccggcgacctgggaaacaactttatggttgatgaatcgagcgtcgggcaatccaaggcgaaatgtgtgtgtcaatttcttcaggagctcaatgatgctgttaaggctaagtttatagaggagtatccagaggctttgattcagaccaacccctccttcttttctcagtttaccttggttgtggccactcagctggtggaagattcaatggtgaagcttgacagaatatgtagggatgcaaatgtgctattgatctttgctcgctcttatggcctcactgggcttgtccgtatcagtttgaaggaacatactgtgattgagtccaagcctgaacatttcctggatgaccttcgtttgaataatccatggcctgagcttagagggtttgcggagaccattgatctagatgtgtcagatcctgttgcccacaaacacacgccatatgttgtcattcttgtcaagatggcacaggagtgggctaaaagtcatggtggtaaacttccaacaactagggaagagaaaaaagagttcaaggagcttatcaaagctaggatgactgcaattgatgaagataactacagagaagctattgagaactcctttaaagtcttcactcctcgaggaatcagtccagagttgcaaccgataataagtgacagccgttctgaaattgattccagttcatcagacttttgggtgatgttggcggcattgaaggtttgtgaaaccaagattcaatctgcgccaactggttatagcgaattcctagcaaatgaaggtggtggtgaggcacccctcgagggatcgataccagatatgacatcttcaactgagcactatgtagccttacagaaaatctaccaagccaaggctgaggctgattttctagttattgaccaaagggttaggagtcttttaaagaaaattggtagagatcctagtagcatctcaaaggcaactgttaaaagtttctgcaagaatgcaagaaaactcaaagtttgccggtaccgccccattgaagatgagttcagttctccaatcctaccagacttacagaagtatctaacagatgaggattacagtgtagctggtgggttttacattttgcttagagctgttgatcggtttgctgctaactataacagtttccccggaaaatttgaaggtgtgatggatgaggacatatctaggttgaagacaacagctgttggccttcttagtgatctgggttgcaatggcgtaacattgacagaagaccttatcaatgagatgtgccgatttggtgctgcagagctccatgcagttgctgctttcatcggaggaattgcatctcaggaagtgattaagcttataacgagacaatttgttcccttgtctgggactttcatcttcaatgggatcgaccacaagtctcaattgttggcactgtag

Protein Analysis

537

Amino Acids

59.48

Weight (kDa)

5.33

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1535
AbsI CCTCGAGG 2 cut(s) 801, 980
Acc65I GGTACC 1 cut(s) 1188
AccB1I GGYRCC 2 cut(s) 973, 1188
AciI CCGC 5 cut(s) 99, 141, 572, 890, 1192
AclWI GGATC 5 cut(s) 178, 593, 994, 1112, 1589
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 2 cut(s) 944, 1340
AcuI CTGAAG 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 1190
AfeI AGCGCT 1 cut(s) 66
AfiI CCNNNNNNNGG 4 cut(s) 983, 1051, 1559, 1560
AhdI GACNNNNNGTC 1 cut(s) 1591
AjnI CCWGG 2 cut(s) 192, 522
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AleI CACNNNNGTG 1 cut(s) 655
Alw21I GWGCWC 3 cut(s) 273, 1020, 1479
Alw26I GTCTC 3 cut(s) 569, 1534, 1599
AlwI GGATC 5 cut(s) 178, 593, 994, 1112, 1589
AlwNI CAGNNNCTG 3 cut(s) 42, 602, 1490
Ama87I CYCGRG 3 cut(s) 68, 801, 980
Aor51HI AGCGCT 1 cut(s) 66
AoxI GGCC 6 cut(s) 55, 100, 366, 454, 551, 1393
ApeKI GCWGC 3 cut(s) 1313, 1469, 1490
ApoI RAATTY 2 cut(s) 944, 1340
Asp718I GGTACC 1 cut(s) 1188
AspLEI GCGC 2 cut(s) 67, 928
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 1335
AsuHPI GGTGA 4 cut(s) 148, 406, 892, 980
AvaI CYCGRG 3 cut(s) 68, 801, 980
BaeI ACNNNNGTAYC 2 cut(s) 1226, 1259
BalI TGGCCA 1 cut(s) 368
BanI GGYRCC 2 cut(s) 973, 1188
BanII GRGCYC 2 cut(s) 273, 1479
BbsI GAAGAC 3 cut(s) 784, 1385, 1443
Bbv12I GWGCWC 3 cut(s) 273, 1020, 1479
BbvCI CCTCAGC 1 cut(s) 1056
BbvI GCAGC 3 cut(s) 1300, 1456, 1477
BccI CCATC 3 cut(s) 161, 640, 1348
BceAI ACGGC 1 cut(s) 828
BciT130I CCWGG 2 cut(s) 194, 524
BciVI GTATCC 1 cut(s) 318
BcnI CCSGG 1 cut(s) 1335
BcoDI GTCTC 3 cut(s) 569, 1534, 1599
BfaI CTAG 7 cut(s) 587, 693, 732, 950, 1070, 1122, 1371
BfmI CTRYAG 3 cut(s) 760, 1470, 1610
BfoI RGCGCY 1 cut(s) 68
BfuI GTATCC 1 cut(s) 318
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 6 cut(s) 100, 142, 891, 1314, 1470, 1491
BlsI GCNGC 6 cut(s) 101, 143, 892, 1315, 1471, 1492
Bme1390I CCNGG 3 cut(s) 194, 524, 1335
BmeRI GACNNNNNGTC 1 cut(s) 1591
BmeT110I CYCGRG 3 cut(s) 68, 801, 980
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 3 cut(s) 112, 975, 1190
BmrFI CCNGG 3 cut(s) 194, 524, 1335
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 5 cut(s) 162, 268, 409, 1137, 1520
BmuI ACTGGG 1 cut(s) 471
BpiI GAAGAC 3 cut(s) 784, 1385, 1443
Bpu10I CCTNAGC 2 cut(s) 555, 1056
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 1335
Bsa29I ATCGAT 1 cut(s) 989
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 6 cut(s) 193, 237, 357, 548, 1050, 1333
Bsc4I CCNNNNNNNGG 4 cut(s) 983, 1051, 1559, 1560
Bse118I RCCGGY 1 cut(s) 1185
Bse1I ACTGG 4 cut(s) 112, 466, 861, 937
Bse3DI GCAATG 1 cut(s) 1423
BseBI CCWGG 2 cut(s) 194, 524
BseCI ATCGAT 1 cut(s) 989
BseDI CCNNGG 6 cut(s) 193, 237, 357, 548, 1050, 1333
BseGI GGATG 4 cut(s) 424, 532, 741, 1363
BseLI CCNNNNNNNGG 4 cut(s) 983, 1051, 1559, 1560
BseMI GCAATG 1 cut(s) 1423
BseMII CTCAG 7 cut(s) 49, 362, 386, 546, 1005, 1047, 1529
BseNI ACTGG 4 cut(s) 112, 466, 861, 937
BseRI GAGGAG 2 cut(s) 317, 789
BseXI GCAGC 3 cut(s) 1300, 1456, 1477
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 6 cut(s) 57, 102, 368, 456, 553, 1395
BshNI GGYRCC 2 cut(s) 973, 1188
BshVI ATCGAT 1 cut(s) 989
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 3 cut(s) 273, 1020, 1479
BsiHKCI CYCGRG 3 cut(s) 68, 801, 980
BsiSI CCGG 3 cut(s) 186, 1186, 1335
BslFI GGGAC 1 cut(s) 1576
BslI CCNNNNNNNGG 4 cut(s) 983, 1051, 1559, 1560
BsmAI GTCTC 3 cut(s) 569, 1534, 1599
BsmFI GGGAC 1 cut(s) 1576
BsmI GAATGC 1 cut(s) 1168
BsnI GGCC 6 cut(s) 57, 102, 368, 456, 553, 1395
Bso31I GGTCTC 1 cut(s) 569
BsoBI CYCGRG 3 cut(s) 68, 801, 980
Bsp1286I GDGCHC 3 cut(s) 273, 1020, 1479
Bsp19I CCATGG 1 cut(s) 548
BspACI CCGC 5 cut(s) 99, 141, 572, 890, 1192
BspANI GGCC 6 cut(s) 57, 102, 368, 456, 553, 1395
BspCNI CTCAG 7 cut(s) 48, 361, 385, 547, 1006, 1048, 1528
BspDI ATCGAT 1 cut(s) 989
BspLI GGNNCC 3 cut(s) 112, 975, 1190
BspMAI CTGCAG 1 cut(s) 1474
BspPI GGATC 5 cut(s) 178, 593, 994, 1112, 1589
BspT107I GGYRCC 2 cut(s) 973, 1188
BspTNI GGTCTC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 1423
BsrFI RCCGGY 1 cut(s) 1185
BsrI ACTGG 4 cut(s) 112, 466, 861, 937
BssAI RCCGGY 1 cut(s) 1185
BssECI CCNNGG 6 cut(s) 193, 237, 357, 548, 1050, 1333
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 4 cut(s) 237, 357, 548, 1050
Bst2UI CCWGG 2 cut(s) 194, 524
Bst4CI ACNGT 6 cut(s) 160, 496, 1144, 1265, 1328, 1611
Bst6I CTCTTC 1 cut(s) 693
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 1490
BstC8I GCNNGC 3 cut(s) 50, 79, 445
BstDSI CCRYGG 1 cut(s) 548
BstF5I GGATG 4 cut(s) 424, 532, 741, 1363
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 2 cut(s) 67, 928
BstMAI GTCTC 3 cut(s) 569, 1534, 1599
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 7 cut(s) 54, 108, 150, 287, 453, 1191, 1490
BstNI CCWGG 2 cut(s) 194, 524
BstSCI CCNGG 3 cut(s) 192, 522, 1333
BstSFI CTRYAG 3 cut(s) 760, 1470, 1610
BstV1I GCAGC 3 cut(s) 1300, 1456, 1477
BstV2I GAAGAC 3 cut(s) 784, 1385, 1443
BstX2I RGATCY 3 cut(s) 170, 598, 1117
BstXI CCANNNNNNTGG 1 cut(s) 376
BstYI RGATCY 3 cut(s) 170, 598, 1117
Bsu15I ATCGAT 1 cut(s) 989
BsuI GTATCC 1 cut(s) 318
BsuRI GGCC 6 cut(s) 57, 102, 368, 456, 553, 1395
BsuTUI ATCGAT 1 cut(s) 989
BtgI CCRYGG 1 cut(s) 548
BtsCI GGATG 4 cut(s) 424, 532, 741, 1363
BtsIMutI CAGTG 3 cut(s) 459, 1270, 1607
Cac8I GCNNGC 3 cut(s) 50, 79, 445
CaiI CAGNNNCTG 3 cut(s) 42, 602, 1490
CfoI GCGC 2 cut(s) 67, 928
Cfr10I RCCGGY 1 cut(s) 1185
Cfr13I GGNCC 1 cut(s) 101
ClaI ATCGAT 1 cut(s) 989
CseI GACGC 2 cut(s) 133, 214
Csp6I GTAC 1 cut(s) 1189
CviAII CATG 3 cut(s) 549, 671, 1481
CviQI GTAC 1 cut(s) 1189
DraI TTTAAA 2 cut(s) 787, 1101
DriI GACNNNNNGTC 1 cut(s) 1591
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 693
Eam1105I GACNNNNNGTC 1 cut(s) 1591
EarI CTCTTC 1 cut(s) 693
Ecl136II GAGCTC 2 cut(s) 271, 1477
Eco130I CCWWGG 4 cut(s) 237, 357, 548, 1050
Eco24I GRGCYC 2 cut(s) 273, 1479
Eco31I GGTCTC 1 cut(s) 569
Eco47III AGCGCT 1 cut(s) 66
Eco53kI GAGCTC 2 cut(s) 271, 1477
Eco57I CTGAAG 1 cut(s) 248
Eco88I CYCGRG 3 cut(s) 68, 801, 980
EcoICRI GAGCTC 2 cut(s) 271, 1477
EcoRI GAATTC 1 cut(s) 944
EcoRII CCWGG 2 cut(s) 192, 522
EcoT14I CCWWGG 4 cut(s) 237, 357, 548, 1050
EcoT38I GRGCYC 2 cut(s) 273, 1479
ErhI CCWWGG 4 cut(s) 237, 357, 548, 1050
FaeI CATG 3 cut(s) 552, 674, 1484
FaqI GGGAC 1 cut(s) 1576
FatI CATG 3 cut(s) 548, 670, 1480
FauNDI CATATG 1 cut(s) 625
Fnu4HI GCNGC 6 cut(s) 100, 142, 891, 1314, 1470, 1491
FokI GGATG 4 cut(s) 431, 539, 748, 1370
FriOI GRGCYC 2 cut(s) 273, 1479
Fsp4HI GCNGC 6 cut(s) 100, 142, 891, 1314, 1470, 1491
FspBI CTAG 7 cut(s) 587, 693, 732, 950, 1070, 1122, 1371
GlaI GCGC 2 cut(s) 66, 927
GluI GCNGC 6 cut(s) 100, 142, 891, 1314, 1470, 1491
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 6 cut(s) 57, 102, 368, 456, 553, 1395
HapII CCGG 3 cut(s) 186, 1186, 1335
HgaI GACGC 2 cut(s) 133, 214
HhaI GCGC 2 cut(s) 67, 928
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 3 cut(s) 552, 674, 1484
Hin6I GCGC 2 cut(s) 65, 926
HinP1I GCGC 2 cut(s) 65, 926
HindIII AAGCTT 2 cut(s) 398, 1529
HpaII CCGG 3 cut(s) 186, 1186, 1335
HphI GGTGA 4 cut(s) 148, 406, 892, 980
Hpy166II GTNNAC 2 cut(s) 354, 680
Hpy188I TCNGA 8 cut(s) 38, 115, 149, 327, 598, 850, 871, 1502
Hpy188III TCNNGA 8 cut(s) 70, 124, 266, 311, 587, 643, 815, 1517
Hpy8I GTNNAC 2 cut(s) 354, 680
Hpy99I CGWCG 2 cut(s) 149, 230
HpyAV CCTTC 7 cut(s) 349, 478, 542, 892, 953, 1340, 1406
HpyCH4III ACNGT 6 cut(s) 160, 496, 1144, 1265, 1328, 1611
HpyCH4V TGCA 9 cut(s) 422, 743, 823, 1158, 1166, 1416, 1472, 1484, 1511
HpyF10VI GCNNNNNNNGC 7 cut(s) 54, 108, 150, 287, 453, 1191, 1490
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 3 cut(s) 552, 674, 1484
HspAI GCGC 2 cut(s) 65, 926
KpnI GGTACC 1 cut(s) 1192
LmnI GCTCC 4 cut(s) 116, 268, 718, 1482
Lsp1109I GCAGC 3 cut(s) 1300, 1456, 1477
LweI GCATC 5 cut(s) 162, 268, 409, 1137, 1520
MaeI CTAG 7 cut(s) 587, 693, 732, 950, 1070, 1122, 1371
MaeIII GTNAC 2 cut(s) 836, 1423
MfeI CAATTG 3 cut(s) 94, 744, 1598
MflI RGATCY 3 cut(s) 170, 598, 1117
MhlI GDGCHC 3 cut(s) 273, 1020, 1479
MlsI TGGCCA 1 cut(s) 368
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 2 cut(s) 512, 1102
MmeI TCCRAC 2 cut(s) 127, 710
Mox20I TGGCCA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 368
MseI TTAA 5 cut(s) 285, 786, 1100, 1146, 1527
MslI CAYNNNNRTG 1 cut(s) 655
Msp20I TGGCCA 1 cut(s) 368
MspA1I CMGCKG 2 cut(s) 376, 1388
MspI CCGG 3 cut(s) 186, 1186, 1335
MspR9I CCNGG 3 cut(s) 194, 524, 1335
MunI CAATTG 3 cut(s) 94, 744, 1598
Mva1269I GAATGC 1 cut(s) 1168
MvaI CCWGG 2 cut(s) 194, 524
MwoI GCNNNNNNNGC 7 cut(s) 54, 108, 150, 287, 453, 1191, 1490
NciI CCSGG 1 cut(s) 1335
NcoI CCATGG 1 cut(s) 548
NdeI CATATG 1 cut(s) 625
NlaIII CATG 3 cut(s) 552, 674, 1484
NlaIV GGNNCC 3 cut(s) 112, 975, 1190
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 836
OliI CACNNNNGTG 1 cut(s) 655
PaeR7I CTCGAG 3 cut(s) 68, 801, 980
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PctI GAATGC 1 cut(s) 1168
PfeI GAWTC 8 cut(s) 39, 182, 218, 322, 386, 807, 857, 916
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 6 cut(s) 101, 143, 892, 1315, 1471, 1492
Ple19I CGATCG 1 cut(s) 28
PleI GAGTC 2 cut(s) 511, 1101
PpsI GAGTC 2 cut(s) 511, 1101
PsiI TTATAA 1 cut(s) 1535
Psp124BI GAGCTC 2 cut(s) 273, 1479
Psp6I CCWGG 2 cut(s) 192, 522
PspGI CCWGG 2 cut(s) 192, 522
PspN4I GGNNCC 3 cut(s) 112, 975, 1190
PspPI GGNCC 1 cut(s) 101
PspXI VCTCGAGB 2 cut(s) 801, 980
PstI CTGCAG 1 cut(s) 1474
PstNI CAGNNNCTG 3 cut(s) 42, 602, 1490
PsuI RGATCY 3 cut(s) 170, 598, 1117
PvuI CGATCG 1 cut(s) 28
PvuII CAGCTG 2 cut(s) 376, 1388
RsaI GTAC 1 cut(s) 1190
RsaNI GTAC 1 cut(s) 1189
RseI CAYNNNNRTG 1 cut(s) 655
SacI GAGCTC 2 cut(s) 273, 1479
SaqAI TTAA 5 cut(s) 285, 786, 1100, 1146, 1527
SatI GCNGC 6 cut(s) 100, 142, 891, 1314, 1470, 1491
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 2 cut(s) 512, 1102
ScrFI CCNGG 3 cut(s) 194, 524, 1335
SduI GDGCHC 3 cut(s) 273, 1020, 1479
SfaNI GCATC 5 cut(s) 162, 268, 409, 1137, 1520
SfcI CTRYAG 3 cut(s) 760, 1470, 1610
Sfr274I CTCGAG 3 cut(s) 68, 801, 980
SlaI CTCGAG 3 cut(s) 68, 801, 980
SmiMI CAYNNNNRTG 1 cut(s) 655
SmlI CTYRAG 4 cut(s) 68, 122, 801, 980
SmoI CTYRAG 4 cut(s) 68, 122, 801, 980
SsiI CCGC 5 cut(s) 99, 141, 572, 890, 1192
SspMI CTAG 7 cut(s) 587, 693, 732, 950, 1070, 1122, 1371
SstI GAGCTC 2 cut(s) 273, 1479
StyD4I CCNGG 3 cut(s) 192, 522, 1333
StyI CCWWGG 4 cut(s) 237, 357, 548, 1050
TaaI ACNGT 6 cut(s) 160, 496, 1144, 1265, 1328, 1611
TaqI TCGA 7 cut(s) 69, 180, 221, 802, 981, 989, 1584
TauI GCSGC 3 cut(s) 102, 144, 893
TfiI GAWTC 8 cut(s) 39, 182, 218, 322, 386, 807, 857, 916
Tru1I TTAA 5 cut(s) 285, 786, 1100, 1146, 1527
Tru9I TTAA 5 cut(s) 285, 786, 1100, 1146, 1527
TscAI CASTG 3 cut(s) 466, 1270, 1614
TseFI GTSAC 1 cut(s) 836
TseI GCWGC 3 cut(s) 1313, 1469, 1490
Tsp45I GTSAC 1 cut(s) 836
TspDTI ATGAA 6 cut(s) 231, 765, 855, 972, 1486, 1558
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 3 cut(s) 466, 1270, 1614
XapI RAATTY 2 cut(s) 944, 1340
XbaI TCTAGA 1 cut(s) 586
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XhoI CTCGAG 3 cut(s) 68, 801, 980
XspI CTAG 7 cut(s) 587, 693, 732, 950, 1070, 1122, 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.