Regulatory subunit of the dimeric E1 enzyme. E1 activates RUB1 NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a RUB1-ECR1 thioester and free AMP. E1 finally transfers RUB1 to the catalytic cysteine of RCE1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G05180 AT1G05180 AT1G05180 AT2G32410 |
| fragaria_vesca | FvH4_6g43170 FvH4_6g43170 FvH4_6g43170 |
| malus_domestica | MD09G1109000.v1.1 MD17G1097000.v1.1 |
| prunus_persica | Prupe.3G217100_v2.0.a1 |
| pyrus_communis | pycom09g03150 pycom17g09280 |
| rosa_chinensis | RchiOBHm_Chr2g0159271 |
| rosa_laevigata | RLG00000021149 |
| rosa_multiflora | Rmu_sc0016200.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00090640 |
| rosa_rugosa | Rorug02G0475500 Rorug02G0475500 Rorug02G0475600 |
| rosa_samantha | Rh2AG541900 Rh2CG524600 Rh2DG564300 |
| rosa_wichuraiana | Rw2G044820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1535 |
| AbsI | CCTCGAGG | 2 cut(s) | 801, 980 |
| Acc65I | GGTACC | 1 cut(s) | 1188 |
| AccB1I | GGYRCC | 2 cut(s) | 973, 1188 |
| AciI | CCGC | 5 cut(s) | 99, 141, 572, 890, 1192 |
| AclWI | GGATC | 5 cut(s) | 178, 593, 994, 1112, 1589 |
| AcoI | YGGCCR | 1 cut(s) | 366 |
| AcsI | RAATTY | 2 cut(s) | 944, 1340 |
| AcuI | CTGAAG | 1 cut(s) | 248 |
| AcyI | GRCGYC | 1 cut(s) | 144 |
| AfaI | GTAC | 1 cut(s) | 1190 |
| AfeI | AGCGCT | 1 cut(s) | 66 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 983, 1051, 1559, 1560 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1591 |
| AjnI | CCWGG | 2 cut(s) | 192, 522 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 323, 355 |
| AleI | CACNNNNGTG | 1 cut(s) | 655 |
| Alw21I | GWGCWC | 3 cut(s) | 273, 1020, 1479 |
| Alw26I | GTCTC | 3 cut(s) | 569, 1534, 1599 |
| AlwI | GGATC | 5 cut(s) | 178, 593, 994, 1112, 1589 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 42, 602, 1490 |
| Ama87I | CYCGRG | 3 cut(s) | 68, 801, 980 |
| Aor51HI | AGCGCT | 1 cut(s) | 66 |
| AoxI | GGCC | 6 cut(s) | 55, 100, 366, 454, 551, 1393 |
| ApeKI | GCWGC | 3 cut(s) | 1313, 1469, 1490 |
| ApoI | RAATTY | 2 cut(s) | 944, 1340 |
| Asp718I | GGTACC | 1 cut(s) | 1188 |
| AspLEI | GCGC | 2 cut(s) | 67, 928 |
| AspS9I | GGNCC | 1 cut(s) | 101 |
| AsuC2I | CCSGG | 1 cut(s) | 1335 |
| AsuHPI | GGTGA | 4 cut(s) | 148, 406, 892, 980 |
| AvaI | CYCGRG | 3 cut(s) | 68, 801, 980 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1226, 1259 |
| BalI | TGGCCA | 1 cut(s) | 368 |
| BanI | GGYRCC | 2 cut(s) | 973, 1188 |
| BanII | GRGCYC | 2 cut(s) | 273, 1479 |
| BbsI | GAAGAC | 3 cut(s) | 784, 1385, 1443 |
| Bbv12I | GWGCWC | 3 cut(s) | 273, 1020, 1479 |
| BbvCI | CCTCAGC | 1 cut(s) | 1056 |
| BbvI | GCAGC | 3 cut(s) | 1300, 1456, 1477 |
| BccI | CCATC | 3 cut(s) | 161, 640, 1348 |
| BceAI | ACGGC | 1 cut(s) | 828 |
| BciT130I | CCWGG | 2 cut(s) | 194, 524 |
| BciVI | GTATCC | 1 cut(s) | 318 |
| BcnI | CCSGG | 1 cut(s) | 1335 |
| BcoDI | GTCTC | 3 cut(s) | 569, 1534, 1599 |
| BfaI | CTAG | 7 cut(s) | 587, 693, 732, 950, 1070, 1122, 1371 |
| BfmI | CTRYAG | 3 cut(s) | 760, 1470, 1610 |
| BfoI | RGCGCY | 1 cut(s) | 68 |
| BfuI | GTATCC | 1 cut(s) | 318 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 108 |
| BisI | GCNGC | 6 cut(s) | 100, 142, 891, 1314, 1470, 1491 |
| BlsI | GCNGC | 6 cut(s) | 101, 143, 892, 1315, 1471, 1492 |
| Bme1390I | CCNGG | 3 cut(s) | 194, 524, 1335 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1591 |
| BmeT110I | CYCGRG | 3 cut(s) | 68, 801, 980 |
| BmgT120I | GGNCC | 1 cut(s) | 101 |
| BmiI | GGNNCC | 3 cut(s) | 112, 975, 1190 |
| BmrFI | CCNGG | 3 cut(s) | 194, 524, 1335 |
| BmrI | ACTGGG | 1 cut(s) | 471 |
| BmsI | GCATC | 5 cut(s) | 162, 268, 409, 1137, 1520 |
| BmuI | ACTGGG | 1 cut(s) | 471 |
| BpiI | GAAGAC | 3 cut(s) | 784, 1385, 1443 |
| Bpu10I | CCTNAGC | 2 cut(s) | 555, 1056 |
| BpuEI | CTTGAG | 1 cut(s) | 107 |
| BpuMI | CCSGG | 1 cut(s) | 1335 |
| Bsa29I | ATCGAT | 1 cut(s) | 989 |
| BsaHI | GRCGYC | 1 cut(s) | 144 |
| BsaI | GGTCTC | 1 cut(s) | 569 |
| BsaJI | CCNNGG | 6 cut(s) | 193, 237, 357, 548, 1050, 1333 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 983, 1051, 1559, 1560 |
| Bse118I | RCCGGY | 1 cut(s) | 1185 |
| Bse1I | ACTGG | 4 cut(s) | 112, 466, 861, 937 |
| Bse3DI | GCAATG | 1 cut(s) | 1423 |
| BseBI | CCWGG | 2 cut(s) | 194, 524 |
| BseCI | ATCGAT | 1 cut(s) | 989 |
| BseDI | CCNNGG | 6 cut(s) | 193, 237, 357, 548, 1050, 1333 |
| BseGI | GGATG | 4 cut(s) | 424, 532, 741, 1363 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 983, 1051, 1559, 1560 |
| BseMI | GCAATG | 1 cut(s) | 1423 |
| BseMII | CTCAG | 7 cut(s) | 49, 362, 386, 546, 1005, 1047, 1529 |
| BseNI | ACTGG | 4 cut(s) | 112, 466, 861, 937 |
| BseRI | GAGGAG | 2 cut(s) | 317, 789 |
| BseXI | GCAGC | 3 cut(s) | 1300, 1456, 1477 |
| Bsh1285I | CGRYCG | 1 cut(s) | 28 |
| BshFI | GGCC | 6 cut(s) | 57, 102, 368, 456, 553, 1395 |
| BshNI | GGYRCC | 2 cut(s) | 973, 1188 |
| BshVI | ATCGAT | 1 cut(s) | 989 |
| BsiEI | CGRYCG | 1 cut(s) | 28 |
| BsiHKAI | GWGCWC | 3 cut(s) | 273, 1020, 1479 |
| BsiHKCI | CYCGRG | 3 cut(s) | 68, 801, 980 |
| BsiSI | CCGG | 3 cut(s) | 186, 1186, 1335 |
| BslFI | GGGAC | 1 cut(s) | 1576 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 983, 1051, 1559, 1560 |
| BsmAI | GTCTC | 3 cut(s) | 569, 1534, 1599 |
| BsmFI | GGGAC | 1 cut(s) | 1576 |
| BsmI | GAATGC | 1 cut(s) | 1168 |
| BsnI | GGCC | 6 cut(s) | 57, 102, 368, 456, 553, 1395 |
| Bso31I | GGTCTC | 1 cut(s) | 569 |
| BsoBI | CYCGRG | 3 cut(s) | 68, 801, 980 |
| Bsp1286I | GDGCHC | 3 cut(s) | 273, 1020, 1479 |
| Bsp19I | CCATGG | 1 cut(s) | 548 |
| BspACI | CCGC | 5 cut(s) | 99, 141, 572, 890, 1192 |
| BspANI | GGCC | 6 cut(s) | 57, 102, 368, 456, 553, 1395 |
| BspCNI | CTCAG | 7 cut(s) | 48, 361, 385, 547, 1006, 1048, 1528 |
| BspDI | ATCGAT | 1 cut(s) | 989 |
| BspLI | GGNNCC | 3 cut(s) | 112, 975, 1190 |
| BspMAI | CTGCAG | 1 cut(s) | 1474 |
| BspPI | GGATC | 5 cut(s) | 178, 593, 994, 1112, 1589 |
| BspT107I | GGYRCC | 2 cut(s) | 973, 1188 |
| BspTNI | GGTCTC | 1 cut(s) | 569 |
| BsrDI | GCAATG | 1 cut(s) | 1423 |
| BsrFI | RCCGGY | 1 cut(s) | 1185 |
| BsrI | ACTGG | 4 cut(s) | 112, 466, 861, 937 |
| BssAI | RCCGGY | 1 cut(s) | 1185 |
| BssECI | CCNNGG | 6 cut(s) | 193, 237, 357, 548, 1050, 1333 |
| BssNI | GRCGYC | 1 cut(s) | 144 |
| BssT1I | CCWWGG | 4 cut(s) | 237, 357, 548, 1050 |
| Bst2UI | CCWGG | 2 cut(s) | 194, 524 |
| Bst4CI | ACNGT | 6 cut(s) | 160, 496, 1144, 1265, 1328, 1611 |
| Bst6I | CTCTTC | 1 cut(s) | 693 |
| BstACI | GRCGYC | 1 cut(s) | 144 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1490 |
| BstC8I | GCNNGC | 3 cut(s) | 50, 79, 445 |
| BstDSI | CCRYGG | 1 cut(s) | 548 |
| BstF5I | GGATG | 4 cut(s) | 424, 532, 741, 1363 |
| BstH2I | RGCGCY | 1 cut(s) | 68 |
| BstHHI | GCGC | 2 cut(s) | 67, 928 |
| BstMAI | GTCTC | 3 cut(s) | 569, 1534, 1599 |
| BstMCI | CGRYCG | 1 cut(s) | 28 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 54, 108, 150, 287, 453, 1191, 1490 |
| BstNI | CCWGG | 2 cut(s) | 194, 524 |
| BstSCI | CCNGG | 3 cut(s) | 192, 522, 1333 |
| BstSFI | CTRYAG | 3 cut(s) | 760, 1470, 1610 |
| BstV1I | GCAGC | 3 cut(s) | 1300, 1456, 1477 |
| BstV2I | GAAGAC | 3 cut(s) | 784, 1385, 1443 |
| BstX2I | RGATCY | 3 cut(s) | 170, 598, 1117 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 376 |
| BstYI | RGATCY | 3 cut(s) | 170, 598, 1117 |
| Bsu15I | ATCGAT | 1 cut(s) | 989 |
| BsuI | GTATCC | 1 cut(s) | 318 |
| BsuRI | GGCC | 6 cut(s) | 57, 102, 368, 456, 553, 1395 |
| BsuTUI | ATCGAT | 1 cut(s) | 989 |
| BtgI | CCRYGG | 1 cut(s) | 548 |
| BtsCI | GGATG | 4 cut(s) | 424, 532, 741, 1363 |
| BtsIMutI | CAGTG | 3 cut(s) | 459, 1270, 1607 |
| Cac8I | GCNNGC | 3 cut(s) | 50, 79, 445 |
| CaiI | CAGNNNCTG | 3 cut(s) | 42, 602, 1490 |
| CfoI | GCGC | 2 cut(s) | 67, 928 |
| Cfr10I | RCCGGY | 1 cut(s) | 1185 |
| Cfr13I | GGNCC | 1 cut(s) | 101 |
| ClaI | ATCGAT | 1 cut(s) | 989 |
| CseI | GACGC | 2 cut(s) | 133, 214 |
| Csp6I | GTAC | 1 cut(s) | 1189 |
| CviAII | CATG | 3 cut(s) | 549, 671, 1481 |
| CviQI | GTAC | 1 cut(s) | 1189 |
| DraI | TTTAAA | 2 cut(s) | 787, 1101 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1591 |
| EaeI | YGGCCR | 1 cut(s) | 366 |
| Eam1104I | CTCTTC | 1 cut(s) | 693 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1591 |
| EarI | CTCTTC | 1 cut(s) | 693 |
| Ecl136II | GAGCTC | 2 cut(s) | 271, 1477 |
| Eco130I | CCWWGG | 4 cut(s) | 237, 357, 548, 1050 |
| Eco24I | GRGCYC | 2 cut(s) | 273, 1479 |
| Eco31I | GGTCTC | 1 cut(s) | 569 |
| Eco47III | AGCGCT | 1 cut(s) | 66 |
| Eco53kI | GAGCTC | 2 cut(s) | 271, 1477 |
| Eco57I | CTGAAG | 1 cut(s) | 248 |
| Eco88I | CYCGRG | 3 cut(s) | 68, 801, 980 |
| EcoICRI | GAGCTC | 2 cut(s) | 271, 1477 |
| EcoRI | GAATTC | 1 cut(s) | 944 |
| EcoRII | CCWGG | 2 cut(s) | 192, 522 |
| EcoT14I | CCWWGG | 4 cut(s) | 237, 357, 548, 1050 |
| EcoT38I | GRGCYC | 2 cut(s) | 273, 1479 |
| ErhI | CCWWGG | 4 cut(s) | 237, 357, 548, 1050 |
| FaeI | CATG | 3 cut(s) | 552, 674, 1484 |
| FaqI | GGGAC | 1 cut(s) | 1576 |
| FatI | CATG | 3 cut(s) | 548, 670, 1480 |
| FauNDI | CATATG | 1 cut(s) | 625 |
| Fnu4HI | GCNGC | 6 cut(s) | 100, 142, 891, 1314, 1470, 1491 |
| FokI | GGATG | 4 cut(s) | 431, 539, 748, 1370 |
| FriOI | GRGCYC | 2 cut(s) | 273, 1479 |
| Fsp4HI | GCNGC | 6 cut(s) | 100, 142, 891, 1314, 1470, 1491 |
| FspBI | CTAG | 7 cut(s) | 587, 693, 732, 950, 1070, 1122, 1371 |
| GlaI | GCGC | 2 cut(s) | 66, 927 |
| GluI | GCNGC | 6 cut(s) | 100, 142, 891, 1314, 1470, 1491 |
| HaeII | RGCGCY | 1 cut(s) | 68 |
| HaeIII | GGCC | 6 cut(s) | 57, 102, 368, 456, 553, 1395 |
| HapII | CCGG | 3 cut(s) | 186, 1186, 1335 |
| HgaI | GACGC | 2 cut(s) | 133, 214 |
| HhaI | GCGC | 2 cut(s) | 67, 928 |
| Hin1I | GRCGYC | 1 cut(s) | 144 |
| Hin1II | CATG | 3 cut(s) | 552, 674, 1484 |
| Hin6I | GCGC | 2 cut(s) | 65, 926 |
| HinP1I | GCGC | 2 cut(s) | 65, 926 |
| HindIII | AAGCTT | 2 cut(s) | 398, 1529 |
| HpaII | CCGG | 3 cut(s) | 186, 1186, 1335 |
| HphI | GGTGA | 4 cut(s) | 148, 406, 892, 980 |
| Hpy166II | GTNNAC | 2 cut(s) | 354, 680 |
| Hpy188I | TCNGA | 8 cut(s) | 38, 115, 149, 327, 598, 850, 871, 1502 |
| Hpy188III | TCNNGA | 8 cut(s) | 70, 124, 266, 311, 587, 643, 815, 1517 |
| Hpy8I | GTNNAC | 2 cut(s) | 354, 680 |
| Hpy99I | CGWCG | 2 cut(s) | 149, 230 |
| HpyAV | CCTTC | 7 cut(s) | 349, 478, 542, 892, 953, 1340, 1406 |
| HpyCH4III | ACNGT | 6 cut(s) | 160, 496, 1144, 1265, 1328, 1611 |
| HpyCH4V | TGCA | 9 cut(s) | 422, 743, 823, 1158, 1166, 1416, 1472, 1484, 1511 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 54, 108, 150, 287, 453, 1191, 1490 |
| Hsp92I | GRCGYC | 1 cut(s) | 144 |
| Hsp92II | CATG | 3 cut(s) | 552, 674, 1484 |
| HspAI | GCGC | 2 cut(s) | 65, 926 |
| KpnI | GGTACC | 1 cut(s) | 1192 |
| LmnI | GCTCC | 4 cut(s) | 116, 268, 718, 1482 |
| Lsp1109I | GCAGC | 3 cut(s) | 1300, 1456, 1477 |
| LweI | GCATC | 5 cut(s) | 162, 268, 409, 1137, 1520 |
| MaeI | CTAG | 7 cut(s) | 587, 693, 732, 950, 1070, 1122, 1371 |
| MaeIII | GTNAC | 2 cut(s) | 836, 1423 |
| MfeI | CAATTG | 3 cut(s) | 94, 744, 1598 |
| MflI | RGATCY | 3 cut(s) | 170, 598, 1117 |
| MhlI | GDGCHC | 3 cut(s) | 273, 1020, 1479 |
| MlsI | TGGCCA | 1 cut(s) | 368 |
| MluNI | TGGCCA | 1 cut(s) | 368 |
| MlyI | GAGTC | 2 cut(s) | 512, 1102 |
| MmeI | TCCRAC | 2 cut(s) | 127, 710 |
| Mox20I | TGGCCA | 1 cut(s) | 368 |
| MscI | TGGCCA | 1 cut(s) | 368 |
| MseI | TTAA | 5 cut(s) | 285, 786, 1100, 1146, 1527 |
| MslI | CAYNNNNRTG | 1 cut(s) | 655 |
| Msp20I | TGGCCA | 1 cut(s) | 368 |
| MspA1I | CMGCKG | 2 cut(s) | 376, 1388 |
| MspI | CCGG | 3 cut(s) | 186, 1186, 1335 |
| MspR9I | CCNGG | 3 cut(s) | 194, 524, 1335 |
| MunI | CAATTG | 3 cut(s) | 94, 744, 1598 |
| Mva1269I | GAATGC | 1 cut(s) | 1168 |
| MvaI | CCWGG | 2 cut(s) | 194, 524 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 54, 108, 150, 287, 453, 1191, 1490 |
| NciI | CCSGG | 1 cut(s) | 1335 |
| NcoI | CCATGG | 1 cut(s) | 548 |
| NdeI | CATATG | 1 cut(s) | 625 |
| NlaIII | CATG | 3 cut(s) | 552, 674, 1484 |
| NlaIV | GGNNCC | 3 cut(s) | 112, 975, 1190 |
| NmeAIII | GCCGAG | 1 cut(s) | 117 |
| NmuCI | GTSAC | 1 cut(s) | 836 |
| OliI | CACNNNNGTG | 1 cut(s) | 655 |
| PaeR7I | CTCGAG | 3 cut(s) | 68, 801, 980 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 186 |
| PctI | GAATGC | 1 cut(s) | 1168 |
| PfeI | GAWTC | 8 cut(s) | 39, 182, 218, 322, 386, 807, 857, 916 |
| PfoI | TCCNGGA | 1 cut(s) | 522 |
| PkrI | GCNGC | 6 cut(s) | 101, 143, 892, 1315, 1471, 1492 |
| Ple19I | CGATCG | 1 cut(s) | 28 |
| PleI | GAGTC | 2 cut(s) | 511, 1101 |
| PpsI | GAGTC | 2 cut(s) | 511, 1101 |
| PsiI | TTATAA | 1 cut(s) | 1535 |
| Psp124BI | GAGCTC | 2 cut(s) | 273, 1479 |
| Psp6I | CCWGG | 2 cut(s) | 192, 522 |
| PspGI | CCWGG | 2 cut(s) | 192, 522 |
| PspN4I | GGNNCC | 3 cut(s) | 112, 975, 1190 |
| PspPI | GGNCC | 1 cut(s) | 101 |
| PspXI | VCTCGAGB | 2 cut(s) | 801, 980 |
| PstI | CTGCAG | 1 cut(s) | 1474 |
| PstNI | CAGNNNCTG | 3 cut(s) | 42, 602, 1490 |
| PsuI | RGATCY | 3 cut(s) | 170, 598, 1117 |
| PvuI | CGATCG | 1 cut(s) | 28 |
| PvuII | CAGCTG | 2 cut(s) | 376, 1388 |
| RsaI | GTAC | 1 cut(s) | 1190 |
| RsaNI | GTAC | 1 cut(s) | 1189 |
| RseI | CAYNNNNRTG | 1 cut(s) | 655 |
| SacI | GAGCTC | 2 cut(s) | 273, 1479 |
| SaqAI | TTAA | 5 cut(s) | 285, 786, 1100, 1146, 1527 |
| SatI | GCNGC | 6 cut(s) | 100, 142, 891, 1314, 1470, 1491 |
| Sau96I | GGNCC | 1 cut(s) | 101 |
| SchI | GAGTC | 2 cut(s) | 512, 1102 |
| ScrFI | CCNGG | 3 cut(s) | 194, 524, 1335 |
| SduI | GDGCHC | 3 cut(s) | 273, 1020, 1479 |
| SfaNI | GCATC | 5 cut(s) | 162, 268, 409, 1137, 1520 |
| SfcI | CTRYAG | 3 cut(s) | 760, 1470, 1610 |
| Sfr274I | CTCGAG | 3 cut(s) | 68, 801, 980 |
| SlaI | CTCGAG | 3 cut(s) | 68, 801, 980 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 655 |
| SmlI | CTYRAG | 4 cut(s) | 68, 122, 801, 980 |
| SmoI | CTYRAG | 4 cut(s) | 68, 122, 801, 980 |
| SsiI | CCGC | 5 cut(s) | 99, 141, 572, 890, 1192 |
| SspMI | CTAG | 7 cut(s) | 587, 693, 732, 950, 1070, 1122, 1371 |
| SstI | GAGCTC | 2 cut(s) | 273, 1479 |
| StyD4I | CCNGG | 3 cut(s) | 192, 522, 1333 |
| StyI | CCWWGG | 4 cut(s) | 237, 357, 548, 1050 |
| TaaI | ACNGT | 6 cut(s) | 160, 496, 1144, 1265, 1328, 1611 |
| TaqI | TCGA | 7 cut(s) | 69, 180, 221, 802, 981, 989, 1584 |
| TauI | GCSGC | 3 cut(s) | 102, 144, 893 |
| TfiI | GAWTC | 8 cut(s) | 39, 182, 218, 322, 386, 807, 857, 916 |
| Tru1I | TTAA | 5 cut(s) | 285, 786, 1100, 1146, 1527 |
| Tru9I | TTAA | 5 cut(s) | 285, 786, 1100, 1146, 1527 |
| TscAI | CASTG | 3 cut(s) | 466, 1270, 1614 |
| TseFI | GTSAC | 1 cut(s) | 836 |
| TseI | GCWGC | 3 cut(s) | 1313, 1469, 1490 |
| Tsp45I | GTSAC | 1 cut(s) | 836 |
| TspDTI | ATGAA | 6 cut(s) | 231, 765, 855, 972, 1486, 1558 |
| TspGWI | ACGGA | 1 cut(s) | 461 |
| TspRI | CASTG | 3 cut(s) | 466, 1270, 1614 |
| XapI | RAATTY | 2 cut(s) | 944, 1340 |
| XbaI | TCTAGA | 1 cut(s) | 586 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 376 |
| XhoI | CTCGAG | 3 cut(s) | 68, 801, 980 |
| XspI | CTAG | 7 cut(s) | 587, 693, 732, 950, 1070, 1122, 1371 |