Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008502

Physical Location & Seq

Genomic Coordinates Reverse (-)

60671913 .. 60673882

Gene Structure 1970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0475600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCAGAGCCGAGGGAGGTGAAGATCGTTAATGATGGCGGCGATGGCGGCGATGATTTCTACGACGCTGATCAGACGGCGTCGCTGAGCCGGAAGGTGTCGTCGTTAGAGTGGGAGAAGGGGGAACTGGAGAAAGAGAACAGAGAAACCAAGGAGAAGATAGGCCAACTGACGAAGGAGATTGAGACTTTGAAGAGCGGCGAGAGGGAGATGAAGGAGAAGCTCAGGGAGATGGAGTTGCAGGTGGAGCGGAACGAGGAGGGCAAGAATATGCTGGAGAGTGTTGCCAACCGAGCCATGGAGCTTGAGACTGAGGTCGGTAGGCTTCAACAGGATTTGATCACTGCAATCACTGAAGGCGAGGAGGCCAATACCGAGCTTGCGGAGATGAAGCGAGTGGTGGTTGAGAAGGGGGAGAAAATTGATGGCTTGGAGAAGGAGCTTGAGACTCTGAAGAAATTGAAAGCTGAGAGCGAGAAGAGGGTTAGGGAATTGGAGAGGAATATTGGGGTTCTGGAGGTGAAGGAAATAGAGGAGAGGAGCAAGAGGGTTAGGGCGGAGGAGGAAATGAGAGAGAGGCTTGAAGCGAAAGATGGTGAAGTTTGTTTGTTCAAAAAGAAAATTGAGGAGTTGGAATCGGTGATTGGGAAGAATGGTGTTGAACTGCAGAAGTGGAGGCAGGGGAAGAGCAATGTTGAGGTAGCCTTGAGGGAATCCGAGGAGAAGTCAAAAGCTATGGAGTTGAAGATGGGACAACTGCAGAAGGATGTGGTGGACGCCGGAAGGGTTATTAATGAATTGAAGGAGAAGACTGTTGGGGTCATTAATGGGACTGTGAATGAAATGAAGGAGATTTTGGAAGGCGGAAATGAGACGGGATCAAAGGGATTGAGCTTGCCTGTGGTTGCAGGGTCTGCTGGAGCCATTGTTGCTGTGGCGGCTGTTGTCTTTGTGTTGTATGGAAGGCGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008641 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010035 GO:0010252 GO:0016043 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0022402 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0034641 GO:0035825 GO:0036211 GO:0042221 GO:0042579 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0046483 GO:0048285 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0099402 GO:0140013 GO:1901360 GO:1901564 GO:1901700 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

ThiF

Protein Analysis

324

Amino Acids

36.47

Weight (kDa)

5.03

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tropomyosin	PF00261	51 - 272	3.5e-06	Tropomyosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05180 AT1G05180 AT1G05180 AT2G32410
fragaria_vesca	FvH4_6g43170 FvH4_6g43170 FvH4_6g43170
malus_domestica	MD09G1109000.v1.1 MD17G1097000.v1.1
prunus_persica	Prupe.3G217100_v2.0.a1
pyrus_communis	pycom09g03150 pycom17g09280
rosa_chinensis	RchiOBHm_Chr2g0159271
rosa_laevigata	RLG00000021149
rosa_multiflora	Rmu_sc0016200.1_g000007
rosa_roxburghii	Rroxscaffold_2G00090640
rosa_rugosa	Rorug02G0475500 Rorug02G0475500 Rorug02G0475600
rosa_samantha	Rh2AG541900 Rh2CG524600 Rh2DG564300
rosa_wichuraiana	Rw2G044820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
Acc36I	ACCTGC	1 cut(s)	232
AccBSI	CCGCTC	2 cut(s)	198, 250
AciI	CCGC	9 cut(s)	39, 48, 198, 250, 383, 557, 864, 938, 967
AclWI	GGATC	1 cut(s)	886
AcuI	CTGAAG	2 cut(s)	375, 473
AcyI	GRCGYC	2 cut(s)	80, 777
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	8 cut(s)	193, 329, 463, 584, 613, 662, 745, 802
AjuI	GAANNNNNNNTTGG	4 cut(s)	627, 659, 839, 871
AluBI	AGCT	7 cut(s)	223, 304, 379, 442, 467, 734, 894
AluI	AGCT	7 cut(s)	223, 304, 379, 442, 467, 734, 894
Alw26I	GTCTC	4 cut(s)	179, 302, 440, 866
AlwI	GGATC	1 cut(s)	886
AlwNI	CAGNNNCTG	1 cut(s)	914
AoxI	GGCC	2 cut(s)	163, 366
AseI	ATTAAT	2 cut(s)	792, 825
AsuHPI	GGTGA	4 cut(s)	31, 532, 608, 652
BbsI	GAAGAC	1 cut(s)	815
BccI	CCATC	6 cut(s)	29, 38, 226, 419, 587, 742
BceAI	ACGGC	1 cut(s)	93
BclI	TGATCA	2 cut(s)	70, 339
BcoDI	GTCTC	4 cut(s)	179, 302, 440, 866
BfmI	CTRYAG	2 cut(s)	665, 758
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	4 cut(s)	40, 49, 199, 939
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	4 cut(s)	41, 50, 200, 940
BmiI	GGNNCC	1 cut(s)	922
BoxI	GACNNNNGTC	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	815
BpmI	CTGGAG	4 cut(s)	149, 296, 536, 939
Bpu10I	CCTNAGC	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	3 cut(s)	326, 464, 727
BsaHI	GRCGYC	2 cut(s)	80, 777
BsaJI	CCNNGG	4 cut(s)	11, 150, 297, 717
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 912, 942
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	697
BseDI	CCNNGG	4 cut(s)	11, 150, 297, 717
BseGI	GGATG	1 cut(s)	772
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	4 cut(s)	77, 238, 303, 459
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	7 cut(s)	272, 377, 548, 553, 575, 641, 734
BshFI	GGCC	2 cut(s)	165, 368
BsiSI	CCGG	2 cut(s)	91, 780
BslFI	GGGAC	2 cut(s)	765, 844
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	4 cut(s)	179, 302, 440, 866
BsmBI	CGTCTC	1 cut(s)	866
BsmFI	GGGAC	2 cut(s)	765, 844
BsnI	GGCC	2 cut(s)	165, 368
Bsp143I	GATC	4 cut(s)	24, 70, 339, 878
Bsp1720I	GCTNAGC	1 cut(s)	86
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	9 cut(s)	39, 48, 198, 250, 383, 557, 864, 938, 967
BspANI	GGCC	2 cut(s)	165, 368
BspCNI	CTCAG	4 cut(s)	78, 237, 304, 460
BspLI	GGNNCC	1 cut(s)	922
BspMAI	CTGCAG	2 cut(s)	669, 762
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	886
BspQI	GCTCTTC	2 cut(s)	188, 680
BsrBI	CCGCTC	2 cut(s)	198, 250
BsrDI	GCAATG	1 cut(s)	697
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	4 cut(s)	11, 150, 297, 717
BssMI	GATC	4 cut(s)	24, 70, 339, 878
BssNI	GRCGYC	2 cut(s)	80, 777
BssT1I	CCWWGG	2 cut(s)	150, 297
Bst4CI	ACNGT	2 cut(s)	814, 835
Bst6I	CTCTTC	3 cut(s)	188, 473, 680
BstACI	GRCGYC	2 cut(s)	80, 777
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstC8I	GCNNGC	2 cut(s)	381, 896
BstDEI	CTNAG	4 cut(s)	86, 224, 312, 468
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	772
BstKTI	GATC	4 cut(s)	27, 73, 342, 881
BstMAI	GTCTC	4 cut(s)	179, 302, 440, 866
BstMBI	GATC	4 cut(s)	24, 70, 339, 878
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 48, 247, 293, 914, 929, 938
BstPAI	GACNNNNGTC	1 cut(s)	314
BstSFI	CTRYAG	2 cut(s)	665, 758
BstV2I	GAAGAC	1 cut(s)	815
BsuRI	GGCC	2 cut(s)	165, 368
BtgI	CCRYGG	1 cut(s)	297
BtgZI	GCGATG	2 cut(s)	57, 66
BtsCI	GGATG	1 cut(s)	772
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 351
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	381, 896
CaiI	CAGNNNCTG	1 cut(s)	914
CseI	GACGC	3 cut(s)	69, 74, 785
CviAII	CATG	1 cut(s)	298
DdeI	CTNAG	4 cut(s)	86, 224, 312, 468
DpnI	GATC	4 cut(s)	26, 72, 341, 880
DpnII	GATC	4 cut(s)	24, 70, 339, 878
Eam1104I	CTCTTC	3 cut(s)	188, 473, 680
EarI	CTCTTC	3 cut(s)	188, 473, 680
EciI	GGCGGA	2 cut(s)	572, 879
Eco130I	CCWWGG	2 cut(s)	150, 297
Eco57I	CTGAAG	2 cut(s)	375, 473
EcoT14I	CCWWGG	2 cut(s)	150, 297
ErhI	CCWWGG	2 cut(s)	150, 297
Esp3I	CGTCTC	1 cut(s)	866
FaeI	CATG	1 cut(s)	301
FaiI	YATR	4 cut(s)	272, 299, 737, 960
FaqI	GGGAC	2 cut(s)	765, 844
FatI	CATG	1 cut(s)	297
FbaI	TGATCA	2 cut(s)	70, 339
Fnu4HI	GCNGC	4 cut(s)	40, 49, 199, 939
FokI	GGATG	1 cut(s)	779
Fsp4HI	GCNGC	4 cut(s)	40, 49, 199, 939
GluI	GCNGC	4 cut(s)	40, 49, 199, 939
GsuI	CTGGAG	4 cut(s)	149, 296, 536, 939
HaeIII	GGCC	2 cut(s)	165, 368
HapII	CCGG	2 cut(s)	91, 780
HgaI	GACGC	3 cut(s)	69, 74, 785
Hin1I	GRCGYC	2 cut(s)	80, 777
Hin1II	CATG	1 cut(s)	301
HinfI	GANTC	3 cut(s)	448, 635, 713
HpaII	CCGG	2 cut(s)	91, 780
HphI	GGTGA	4 cut(s)	31, 532, 608, 652
Hpy166II	GTNNAC	1 cut(s)	775
Hpy188I	TCNGA	3 cut(s)	75, 453, 718
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	1 cut(s)	775
Hpy99I	CGWCG	3 cut(s)	68, 85, 106
HpyCH4III	ACNGT	2 cut(s)	814, 835
HpyCH4V	TGCA	5 cut(s)	241, 347, 667, 760, 908
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 48, 247, 293, 914, 929, 938
HpyF3I	CTNAG	4 cut(s)	86, 224, 312, 468
Hsp92I	GRCGYC	2 cut(s)	80, 777
Hsp92II	CATG	1 cut(s)	301
Ksp22I	TGATCA	2 cut(s)	70, 339
Kzo9I	GATC	4 cut(s)	24, 70, 339, 878
LguI	GCTCTTC	2 cut(s)	188, 680
LmnI	GCTCC	5 cut(s)	247, 301, 439, 540, 920
MalI	GATC	4 cut(s)	26, 72, 341, 880
MbiI	CCGCTC	2 cut(s)	198, 250
MboI	GATC	4 cut(s)	24, 70, 339, 878
MboII	GAAGA	9 cut(s)	34, 169, 205, 466, 490, 661, 697, 757, 820
MluCI	AATT	5 cut(s)	420, 458, 491, 621, 797
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	1 cut(s)	612
MseI	TTAA	3 cut(s)	30, 792, 825
MspI	CCGG	2 cut(s)	91, 780
MwoI	GCNNNNNNNGC	7 cut(s)	45, 48, 247, 293, 914, 929, 938
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	24, 70, 339, 878
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	922
NmeAIII	GCCGAG	1 cut(s)	36
PaqCI	CACCTGC	1 cut(s)	232
PciSI	GCTCTTC	2 cut(s)	188, 680
PfeI	GAWTC	2 cut(s)	635, 713
PflFI	GACNNNGTC	1 cut(s)	79
PkrI	GCNGC	4 cut(s)	41, 50, 200, 940
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PshAI	GACNNNNGTC	1 cut(s)	314
PshBI	ATTAAT	2 cut(s)	792, 825
PspN4I	GGNNCC	1 cut(s)	922
PstI	CTGCAG	2 cut(s)	669, 762
PstNI	CAGNNNCTG	1 cut(s)	914
PsyI	GACNNNGTC	1 cut(s)	79
SapI	GCTCTTC	2 cut(s)	188, 680
SaqAI	TTAA	3 cut(s)	30, 792, 825
SatI	GCNGC	4 cut(s)	40, 49, 199, 939
Sau3AI	GATC	4 cut(s)	24, 70, 339, 878
SchI	GAGTC	1 cut(s)	442
SfcI	CTRYAG	2 cut(s)	665, 758
SmlI	CTYRAG	3 cut(s)	305, 443, 706
SmoI	CTYRAG	3 cut(s)	305, 443, 706
Sse9I	AATT	5 cut(s)	420, 458, 491, 621, 797
SsiI	CCGC	9 cut(s)	39, 48, 198, 250, 383, 557, 864, 938, 967
SspI	AATATT	1 cut(s)	505
StyI	CCWWGG	2 cut(s)	150, 297
TaaI	ACNGT	2 cut(s)	814, 835
TasI	AATT	5 cut(s)	420, 458, 491, 621, 797
TauI	GCSGC	4 cut(s)	42, 51, 201, 941
TfiI	GAWTC	2 cut(s)	635, 713
Tru1I	TTAA	3 cut(s)	30, 792, 825
Tru9I	TTAA	3 cut(s)	30, 792, 825
TscAI	CASTG	2 cut(s)	349, 358
TspDTI	ATGAA	5 cut(s)	227, 404, 810, 855, 860
TspRI	CASTG	2 cut(s)	349, 358
Tth111I	GACNNNGTC	1 cut(s)	79
VspI	ATTAAT	2 cut(s)	792, 825
XcmI	CCANNNNNNNNNTGG	2 cut(s)	295, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.