Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008502

Physical Location & Seq

Genomic Coordinates Reverse (-)

79348874 .. 79355026

Gene Structure 6153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG564300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGTGAAGCTCGACAGAATATGTAGGGATGCAAATGTGCTATTGATCTTTGCTCGCTCTTATGGTCTCACTGGGCTTGTCCGTATCAGTTTGAAGGAACATACTGTGATTGAGTCGAAGCCTGAACATTTCCTGGATGACCTTCGTTTGAATAATCCATGGCCTGAGCTTAGAGGGTTTGCGGAGACCATTGATCTAGATGTGTCAGATCCTGTTGCCCACAAACACACACCATATGTTGTCATTCTTGTCAAAATGGCACAGGAGTGGGCTAAAAGTCATGGTGGTAAACTTCCAACAACTAGGGAAGAGAAAAAAGAGTTCAAGGAGCTTATCAAAGCTAGGATGACTGCAATTGATGAAGATAACTACAGAGAAGCTATTGAGAACTCCTTTAAAGTCTTCACTCCTCGAGGAATCAGTCCAGAGTTGCAACAGATAATTAGTGACAGCCGTTCTGAAATTGATTCCAGTTCATCAGACTTTTGGGTGATGGTGGCGGCATTGAAGGAATTCCTAGCAAATGAAGGTGGTGGTGAGGCACCCCTCGAGGGATCAATACCAGATATGACATCTTCAACTGAGCACTATGTAGCCTTACAGAAAATCTACCAAGCCAAGGCTGAGGCTGATTTTCTAGTTATTGACCAAAGGGTTAGGAGTCTTCTAAAGAAAATTGGTAGAGATCCTAGTAGCATCTCAAAGGCAACTGTTAAAAGTTTCTGCAAGAATGCAAGAAAACTCAAAGTTTGCCGGTACCGCCCCATTGAAGATGAGTTCAGTTCTCCAATCCTACCAGACTTACAGAAGTATCTAACAGATGAGGATTACAGTGTAGCTGGTGGGTTTTACATTTTGCTTAGAGCTGTAGATCGGTTTGCTGCTAATTATAACAGTTTCCCCGGAAAATTTGAAGGTGTGATGGATGAGGACATATCTAGGTTGAAGACAACAGCTGTTGGCCTTCTTAGTGATATGGGTTGCAATGGTGTAACATTGACAGAAGACCTTATCAATGAGATGTGCCGATTTGGTGCTGCAGAGCTCCATGCAGTTGCTGCTTTCATCGGAGGAATTGCATCTCAGGAAGTGATTAAGCTTATAACGAGACAATTTGTACCCTTGTCTGGGACTTTCATCTTCAATGGCATCGACCACAAGTCTCAATTGTTGGCACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008641 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010035 GO:0010252 GO:0016043 GO:0016874 GO:0016877 GO:0019538 GO:0019781 GO:0022402 GO:0022414 GO:0023052 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0034641 GO:0035825 GO:0036211 GO:0042221 GO:0042579 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0046483 GO:0048285 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0071840 GO:0090304 GO:0099402 GO:0140013 GO:1901360 GO:1901564 GO:1901700 GO:1903046 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

ThiF

Protein Analysis

393

Amino Acids

43.99

Weight (kDa)

5.74

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05180 AT1G05180 AT1G05180 AT2G32410
fragaria_vesca	FvH4_6g43170 FvH4_6g43170 FvH4_6g43170
malus_domestica	MD09G1109000.v1.1 MD17G1097000.v1.1
prunus_persica	Prupe.3G217100_v2.0.a1
pyrus_communis	pycom09g03150 pycom17g09280
rosa_chinensis	RchiOBHm_Chr2g0159271
rosa_laevigata	RLG00000021149
rosa_multiflora	Rmu_sc0016200.1_g000007
rosa_roxburghii	Rroxscaffold_2G00090640
rosa_rugosa	Rorug02G0475500 Rorug02G0475500 Rorug02G0475600
rosa_samantha	Rh2AG541900 Rh2CG524600 Rh2DG564300
rosa_wichuraiana	Rw2G044820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	891, 1103
AbsI	CCTCGAGG	2 cut(s)	411, 548
Acc65I	GGTACC	1 cut(s)	756
AccB1I	GGYRCC	2 cut(s)	541, 756
AciI	CCGC	3 cut(s)	182, 500, 760
AclWI	GGATC	3 cut(s)	203, 562, 680
AcsI	RAATTY	2 cut(s)	512, 908
AfaI	GTAC	2 cut(s)	758, 1119
AfiI	CCNNNNNNNGG	4 cut(s)	551, 619, 1127, 1128
AgsI	TTSAA	9 cut(s)	94, 151, 325, 508, 579, 770, 914, 946, 1144
AhdI	GACNNNNNGTC	1 cut(s)	1159
AjnI	CCWGG	1 cut(s)	132
AleI	CACNNNNGTG	1 cut(s)	265
Alw21I	GWGCWC	2 cut(s)	588, 1047
Alw26I	GTCTC	4 cut(s)	71, 179, 1102, 1167
AlwI	GGATC	3 cut(s)	203, 562, 680
AlwNI	CAGNNNCTG	2 cut(s)	212, 1058
Ama87I	CYCGRG	2 cut(s)	411, 548
AoxI	GGCC	2 cut(s)	161, 961
ApeKI	GCWGC	3 cut(s)	881, 1037, 1058
ApoI	RAATTY	2 cut(s)	512, 908
Asp700I	GAANNNNTTC	1 cut(s)	512
Asp718I	GGTACC	1 cut(s)	756
AsuC2I	CCSGG	1 cut(s)	903
AsuHPI	GGTGA	3 cut(s)	16, 502, 548
AvaI	CYCGRG	2 cut(s)	411, 548
BaeI	ACNNNNGTAYC	2 cut(s)	794, 827
BanI	GGYRCC	2 cut(s)	541, 756
BanII	GRGCYC	1 cut(s)	1047
BbsI	GAAGAC	4 cut(s)	394, 656, 953, 1011
Bbv12I	GWGCWC	2 cut(s)	588, 1047
BbvCI	CCTCAGC	1 cut(s)	624
BbvI	GCAGC	3 cut(s)	868, 1024, 1045
BccI	CCATC	2 cut(s)	487, 916
BceAI	ACGGC	1 cut(s)	438
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	903
BcoDI	GTCTC	4 cut(s)	71, 179, 1102, 1167
BfaI	CTAG	7 cut(s)	197, 303, 342, 518, 638, 690, 939
BfmI	CTRYAG	4 cut(s)	370, 867, 1038, 1178
BisI	GCNGC	4 cut(s)	501, 882, 1038, 1059
BlsI	GCNGC	4 cut(s)	502, 883, 1039, 1060
Bme1390I	CCNGG	2 cut(s)	134, 903
BmeRI	GACNNNNNGTC	1 cut(s)	1159
BmeT110I	CYCGRG	2 cut(s)	411, 548
BmiI	GGNNCC	2 cut(s)	543, 758
BmrFI	CCNGG	2 cut(s)	134, 903
BmrI	ACTGGG	1 cut(s)	81
BmsI	GCATC	4 cut(s)	19, 705, 1088, 1158
BmuI	ACTGGG	1 cut(s)	81
BpiI	GAAGAC	4 cut(s)	394, 656, 953, 1011
Bpu10I	CCTNAGC	2 cut(s)	165, 624
BpuMI	CCSGG	1 cut(s)	903
BsaI	GGTCTC	2 cut(s)	71, 179
BsaJI	CCNNGG	3 cut(s)	158, 618, 901
Bsc4I	CCNNNNNNNGG	4 cut(s)	551, 619, 1127, 1128
Bse118I	RCCGGY	1 cut(s)	753
Bse1I	ACTGG	2 cut(s)	76, 471
Bse3DI	GCAATG	1 cut(s)	991
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	158, 618, 901
BseGI	GGATG	4 cut(s)	34, 142, 351, 931
BseLI	CCNNNNNNNGG	4 cut(s)	551, 619, 1127, 1128
BseMI	GCAATG	1 cut(s)	991
BseMII	CTCAG	4 cut(s)	156, 573, 615, 1097
BseNI	ACTGG	2 cut(s)	76, 471
BseRI	GAGGAG	1 cut(s)	399
BseXI	GCAGC	3 cut(s)	868, 1024, 1045
BshFI	GGCC	2 cut(s)	163, 963
BshNI	GGYRCC	2 cut(s)	541, 756
BsiHKAI	GWGCWC	2 cut(s)	588, 1047
BsiHKCI	CYCGRG	2 cut(s)	411, 548
BsiSI	CCGG	2 cut(s)	754, 903
BslFI	GGGAC	1 cut(s)	1144
BslI	CCNNNNNNNGG	4 cut(s)	551, 619, 1127, 1128
BsmAI	GTCTC	4 cut(s)	71, 179, 1102, 1167
BsmFI	GGGAC	1 cut(s)	1144
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	2 cut(s)	163, 963
Bso31I	GGTCTC	2 cut(s)	71, 179
BsoBI	CYCGRG	2 cut(s)	411, 548
Bsp1286I	GDGCHC	2 cut(s)	588, 1047
Bsp143I	GATC	6 cut(s)	45, 193, 208, 554, 685, 871
Bsp19I	CCATGG	1 cut(s)	158
BspACI	CCGC	3 cut(s)	182, 500, 760
BspANI	GGCC	2 cut(s)	163, 963
BspCNI	CTCAG	4 cut(s)	157, 574, 616, 1096
BspLI	GGNNCC	2 cut(s)	543, 758
BspMAI	CTGCAG	1 cut(s)	1042
BspPI	GGATC	3 cut(s)	203, 562, 680
BspT107I	GGYRCC	2 cut(s)	541, 756
BspTNI	GGTCTC	2 cut(s)	71, 179
BsrDI	GCAATG	1 cut(s)	991
BsrFI	RCCGGY	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	76, 471
BssAI	RCCGGY	1 cut(s)	753
BssECI	CCNNGG	3 cut(s)	158, 618, 901
BssMI	GATC	6 cut(s)	45, 193, 208, 554, 685, 871
BssT1I	CCWWGG	2 cut(s)	158, 618
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	5 cut(s)	106, 712, 833, 896, 1179
Bst6I	CTCTTC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	1058
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	7 cut(s)	165, 170, 582, 624, 860, 968, 1083
BstDSI	CCRYGG	1 cut(s)	158
BstF5I	GGATG	4 cut(s)	34, 142, 351, 931
BstKTI	GATC	6 cut(s)	48, 196, 211, 557, 688, 874
BstMAI	GTCTC	4 cut(s)	71, 179, 1102, 1167
BstMBI	GATC	6 cut(s)	45, 193, 208, 554, 685, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	759, 1058
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	132, 901
BstSFI	CTRYAG	4 cut(s)	370, 867, 1038, 1178
BstV1I	GCAGC	3 cut(s)	868, 1024, 1045
BstV2I	GAAGAC	4 cut(s)	394, 656, 953, 1011
BstX2I	RGATCY	2 cut(s)	208, 685
BstYI	RGATCY	2 cut(s)	208, 685
BsuRI	GGCC	2 cut(s)	163, 963
BtgI	CCRYGG	1 cut(s)	158
BtsCI	GGATG	4 cut(s)	34, 142, 351, 931
BtsIMutI	CAGTG	3 cut(s)	69, 838, 1175
Cac8I	GCNNGC	1 cut(s)	55
CaiI	CAGNNNCTG	2 cut(s)	212, 1058
Cfr10I	RCCGGY	1 cut(s)	753
Csp6I	GTAC	2 cut(s)	757, 1118
CviAII	CATG	3 cut(s)	159, 281, 1049
CviQI	GTAC	2 cut(s)	757, 1118
DdeI	CTNAG	7 cut(s)	165, 170, 582, 624, 860, 968, 1083
DpnI	GATC	6 cut(s)	47, 195, 210, 556, 687, 873
DpnII	GATC	6 cut(s)	45, 193, 208, 554, 685, 871
DraI	TTTAAA	1 cut(s)	397
DriI	GACNNNNNGTC	1 cut(s)	1159
Eam1104I	CTCTTC	1 cut(s)	303
Eam1105I	GACNNNNNGTC	1 cut(s)	1159
EarI	CTCTTC	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	1045
Eco130I	CCWWGG	2 cut(s)	158, 618
Eco24I	GRGCYC	1 cut(s)	1047
Eco31I	GGTCTC	2 cut(s)	71, 179
Eco53kI	GAGCTC	1 cut(s)	1045
Eco88I	CYCGRG	2 cut(s)	411, 548
EcoICRI	GAGCTC	1 cut(s)	1045
EcoRI	GAATTC	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	158, 618
EcoT38I	GRGCYC	1 cut(s)	1047
ErhI	CCWWGG	2 cut(s)	158, 618
FaeI	CATG	3 cut(s)	162, 284, 1052
FaqI	GGGAC	1 cut(s)	1144
FatI	CATG	3 cut(s)	158, 280, 1048
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	501, 882, 1038, 1059
FokI	GGATG	4 cut(s)	41, 149, 358, 938
FriOI	GRGCYC	1 cut(s)	1047
Fsp4HI	GCNGC	4 cut(s)	501, 882, 1038, 1059
FspBI	CTAG	7 cut(s)	197, 303, 342, 518, 638, 690, 939
GluI	GCNGC	4 cut(s)	501, 882, 1038, 1059
HaeIII	GGCC	2 cut(s)	163, 963
HapII	CCGG	2 cut(s)	754, 903
Hin1II	CATG	3 cut(s)	162, 284, 1052
HindIII	AAGCTT	1 cut(s)	1097
HinfI	GANTC	4 cut(s)	113, 417, 467, 661
HpaII	CCGG	2 cut(s)	754, 903
HphI	GGTGA	3 cut(s)	16, 502, 548
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	4 cut(s)	208, 460, 481, 1070
Hpy188III	TCNNGA	3 cut(s)	197, 425, 1085
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	6 cut(s)	88, 152, 502, 521, 908, 974
HpyCH4III	ACNGT	5 cut(s)	106, 712, 833, 896, 1179
HpyCH4V	TGCA	9 cut(s)	32, 353, 433, 726, 734, 984, 1040, 1052, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	759, 1058
HpyF3I	CTNAG	7 cut(s)	165, 170, 582, 624, 860, 968, 1083
Hsp92II	CATG	3 cut(s)	162, 284, 1052
KpnI	GGTACC	1 cut(s)	760
Kzo9I	GATC	6 cut(s)	45, 193, 208, 554, 685, 871
LmnI	GCTCC	2 cut(s)	328, 1050
Lsp1109I	GCAGC	3 cut(s)	868, 1024, 1045
LweI	GCATC	4 cut(s)	19, 705, 1088, 1158
MaeI	CTAG	7 cut(s)	197, 303, 342, 518, 638, 690, 939
MaeIII	GTNAC	2 cut(s)	446, 991
MalI	GATC	6 cut(s)	47, 195, 210, 556, 687, 873
MboI	GATC	6 cut(s)	45, 193, 208, 554, 685, 871
MboII	GAAGA	9 cut(s)	320, 374, 394, 567, 656, 782, 958, 1016, 1132
MfeI	CAATTG	2 cut(s)	354, 1166
MflI	RGATCY	2 cut(s)	208, 685
MhlI	GDGCHC	2 cut(s)	588, 1047
MlyI	GAGTC	2 cut(s)	122, 670
MmeI	TCCRAC	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	3 cut(s)	396, 714, 1095
MslI	CAYNNNNRTG	1 cut(s)	265
MspA1I	CMGCKG	1 cut(s)	956
MspI	CCGG	2 cut(s)	754, 903
MspR9I	CCNGG	2 cut(s)	134, 903
MunI	CAATTG	2 cut(s)	354, 1166
Mva1269I	GAATGC	1 cut(s)	736
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	759, 1058
NciI	CCSGG	1 cut(s)	903
NcoI	CCATGG	1 cut(s)	158
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	6 cut(s)	45, 193, 208, 554, 685, 871
NlaIII	CATG	3 cut(s)	162, 284, 1052
NlaIV	GGNNCC	2 cut(s)	543, 758
NmuCI	GTSAC	1 cut(s)	446
OliI	CACNNNNGTG	1 cut(s)	265
PaeR7I	CTCGAG	2 cut(s)	411, 548
PctI	GAATGC	1 cut(s)	736
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	417, 467
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	4 cut(s)	502, 883, 1039, 1060
PleI	GAGTC	2 cut(s)	121, 669
PpsI	GAGTC	2 cut(s)	121, 669
PsiI	TTATAA	2 cut(s)	891, 1103
Psp124BI	GAGCTC	1 cut(s)	1047
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	543, 758
PspXI	VCTCGAGB	2 cut(s)	411, 548
PstI	CTGCAG	1 cut(s)	1042
PstNI	CAGNNNCTG	2 cut(s)	212, 1058
PsuI	RGATCY	2 cut(s)	208, 685
PvuII	CAGCTG	1 cut(s)	956
RsaI	GTAC	2 cut(s)	758, 1119
RsaNI	GTAC	2 cut(s)	757, 1118
RseI	CAYNNNNRTG	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	1047
SaqAI	TTAA	3 cut(s)	396, 714, 1095
SatI	GCNGC	4 cut(s)	501, 882, 1038, 1059
Sau3AI	GATC	6 cut(s)	45, 193, 208, 554, 685, 871
SchI	GAGTC	2 cut(s)	122, 670
ScrFI	CCNGG	2 cut(s)	134, 903
SduI	GDGCHC	2 cut(s)	588, 1047
SfaNI	GCATC	4 cut(s)	19, 705, 1088, 1158
SfcI	CTRYAG	4 cut(s)	370, 867, 1038, 1178
Sfr274I	CTCGAG	2 cut(s)	411, 548
SlaI	CTCGAG	2 cut(s)	411, 548
SmiMI	CAYNNNNRTG	1 cut(s)	265
SmlI	CTYRAG	2 cut(s)	411, 548
SmoI	CTYRAG	2 cut(s)	411, 548
SsiI	CCGC	3 cut(s)	182, 500, 760
SspMI	CTAG	7 cut(s)	197, 303, 342, 518, 638, 690, 939
SstI	GAGCTC	1 cut(s)	1047
StyD4I	CCNGG	2 cut(s)	132, 901
StyI	CCWWGG	2 cut(s)	158, 618
TaaI	ACNGT	5 cut(s)	106, 712, 833, 896, 1179
TaqI	TCGA	5 cut(s)	12, 116, 412, 549, 1152
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	2 cut(s)	417, 467
Tru1I	TTAA	3 cut(s)	396, 714, 1095
Tru9I	TTAA	3 cut(s)	396, 714, 1095
TscAI	CASTG	3 cut(s)	76, 838, 1182
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	3 cut(s)	881, 1037, 1058
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	5 cut(s)	375, 465, 540, 1054, 1126
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	3 cut(s)	76, 838, 1182
XapI	RAATTY	2 cut(s)	512, 908
XbaI	TCTAGA	1 cut(s)	196
XhoI	CTCGAG	2 cut(s)	411, 548
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	7 cut(s)	197, 303, 342, 518, 638, 690, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.