Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015191

Physical Location & Seq

Genomic Coordinates Forward (+)

1629446 .. 1630863

Gene Structure 1418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGAAGGCAGTTCATTTATCCACCAAAAATGGACCCAAGGTTCCAGGAGAGCCAACGAAGACCGGAACCTCCATGGTTGACACGGCAGCTTCAGCCGTACAAAGCTTCGCTCCGATTAACCAAATCCACCAACATCTCTGCGCGTTTCATTTCTATGCATATGACATGACCCGACAAGTGGAGGCACACCATTTCTGTGGTCACATCAACGAAGACATGCGCCAGTGTCTGATCTACGACGGTCCTGATGCCAACGCTCGTCTGATCGGTCTGGAGTACATTGTGACAGAGAAGCTCTTTATGACATTGCCTGACGATGAGAAGAAGCTTTGGCACACTCACGAGTGGGAAGTTAAAGGAGGCTTCTTGTTCATGCCCGGTGTTCCCGAAGCTATTCAACGGCAAGATCTCGAAAAAGTCGCCAAGACTTATGGGAAAGTTTACCATTTCTGGCAAGTCGATTTGGGGCATCAGCTTCCCATTGGCTTGCCTAATATCATGATGGCTGTTACTCGAGACGGACAACTTTATCCGGAAATGATCAAGGAGACGGAAAAGCAATTTGGAGTATCGATAGACAAGGAGCGAGAGTCAAGGGCTTATATGAAGGGTCCAGACCATGGGATCCATCCCTTGGCAAATGGAGGAGGCAAAGGCCTGAAGTTGGAGTTGCGAGAGGTTGACATAAAGCCGGTTGAGTCCGTTCCAAGAGTCTTCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0010344 GO:0010876 GO:0019915 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051235 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1264

Protein Analysis

241

Amino Acids

27.29

Weight (kDa)

6.22

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1264	PF06884	37 - 203	7.8e-75	Protein of unknown function (DUF1264)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05510 AT2G31985
fragaria_vesca	FvH4_2g06270 FvH4_2g06270
malus_domestica	MD05G1004300.v1.1
prunus_persica	Prupe.8G007500_v2.0.a1
pyrus_communis	pycom05g00380
rosa_chinensis	RchiOBHm_Chr6g0256911
rosa_laevigata	RLG00000014656
rosa_multiflora	Rmu_sc0003076.1_g000030
rosa_roxburghii	Rroxscaffold_7G00208290
rosa_rugosa	Rorug05G0577000
rosa_samantha	Rh6AG095700 Rh6BG086500 Rh6DG078500
rosa_wichuraiana	Rw6G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	623, 637
AccII	CGCG	1 cut(s)	146
AccIII	TCCGGA	1 cut(s)	535
AclWI	GGATC	2 cut(s)	622, 635
AcuI	CTGAAG	2 cut(s)	78, 683
AfaI	GTAC	2 cut(s)	102, 281
AfiI	CCNNNNNNNGG	4 cut(s)	181, 623, 637, 667
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	46
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AloI	GAACNNNNNNTCC	2 cut(s)	27, 59
AluBI	AGCT	6 cut(s)	92, 108, 298, 331, 395, 478
AluI	AGCT	6 cut(s)	92, 108, 298, 331, 395, 478
Alw26I	GTCTC	2 cut(s)	513, 545
AlwI	GGATC	2 cut(s)	622, 635
AlwNI	CAGNNNCTG	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	516
Aor13HI	TCCGGA	1 cut(s)	535
AoxI	GGCC	1 cut(s)	658
ApeKI	GCWGC	1 cut(s)	89
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	2 cut(s)	146, 225
AspS9I	GGNCC	3 cut(s)	35, 245, 614
AsuC2I	CCSGG	1 cut(s)	381
AvaI	CYCGRG	1 cut(s)	516
AvaII	GGWCC	3 cut(s)	35, 245, 614
BamHI	GGATCC	1 cut(s)	627
BauI	CACGAG	1 cut(s)	344
BbsI	GAAGAC	3 cut(s)	68, 222, 709
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	2 cut(s)	499, 639
BceAI	ACGGC	3 cut(s)	83, 102, 419
BciT130I	CCWGG	1 cut(s)	48
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	513, 545
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	48, 381
Bme18I	GGWCC	3 cut(s)	35, 245, 614
BmeT110I	CYCGRG	1 cut(s)	516
BmgT120I	GGNCC	3 cut(s)	35, 245, 614
BmiI	GGNNCC	5 cut(s)	37, 45, 70, 615, 629
BmrFI	CCNGG	2 cut(s)	48, 381
BmsI	GCATC	2 cut(s)	241, 481
BpiI	GAAGAC	3 cut(s)	68, 222, 709
BpmI	CTGGAG	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	575
BsaJI	CCNNGG	4 cut(s)	39, 75, 622, 636
BsaWI	WCCGGW	2 cut(s)	65, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	578, 608
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 623, 637, 667
Bse118I	RCCGGY	1 cut(s)	694
Bse1I	ACTGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	308
BseAI	TCCGGA	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	48
BseCI	ATCGAT	1 cut(s)	575
BseDI	CCNNGG	4 cut(s)	39, 75, 622, 636
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	4 cut(s)	181, 623, 637, 667
BseMI	GCAATG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	226
BseRI	GAGGAG	1 cut(s)	663
BseXI	GCAGC	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	660
BshVI	ATCGAT	1 cut(s)	575
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	4 cut(s)	66, 381, 536, 695
BslI	CCNNNNNNNGG	4 cut(s)	181, 623, 637, 667
BsmAI	GTCTC	2 cut(s)	513, 545
BsmBI	CGTCTC	2 cut(s)	513, 545
BsnI	GGCC	1 cut(s)	660
BsoBI	CYCGRG	1 cut(s)	516
Bsp13I	TCCGGA	1 cut(s)	535
Bsp143I	GATC	5 cut(s)	234, 267, 409, 543, 627
Bsp19I	CCATGG	2 cut(s)	75, 622
BspANI	GGCC	1 cut(s)	660
BspDI	ATCGAT	1 cut(s)	575
BspEI	TCCGGA	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	5 cut(s)	37, 45, 70, 615, 629
BspPI	GGATC	2 cut(s)	622, 635
BsrDI	GCAATG	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	694
BsrI	ACTGG	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	694
BssECI	CCNNGG	4 cut(s)	39, 75, 622, 636
BssMI	GATC	5 cut(s)	234, 267, 409, 543, 627
BssSI	CACGAG	1 cut(s)	344
BssT1I	CCWWGG	4 cut(s)	39, 75, 622, 636
Bst2BI	CACGAG	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	491
BstDSI	CCRYGG	2 cut(s)	75, 622
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	2 cut(s)	146, 225
BstKTI	GATC	5 cut(s)	237, 270, 412, 546, 630
BstMAI	GTCTC	2 cut(s)	513, 545
BstMBI	GATC	5 cut(s)	234, 267, 409, 543, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	46, 379
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	3 cut(s)	68, 222, 709
BstX2I	RGATCY	2 cut(s)	409, 627
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	2 cut(s)	409, 627
Bsu15I	ATCGAT	1 cut(s)	575
BsuRI	GGCC	1 cut(s)	660
BsuTUI	ATCGAT	1 cut(s)	575
BtgI	CCRYGG	2 cut(s)	75, 622
BtsCI	GGATG	1 cut(s)	631
BtsIMutI	CAGTG	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	232
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	2 cut(s)	146, 225
Cfr10I	RCCGGY	1 cut(s)	694
Cfr13I	GGNCC	3 cut(s)	35, 245, 614
ClaI	ATCGAT	1 cut(s)	575
Csp6I	GTAC	2 cut(s)	101, 280
CviAII	CATG	6 cut(s)	76, 169, 220, 376, 502, 623
CviQI	GTAC	2 cut(s)	101, 280
DpnI	GATC	5 cut(s)	236, 269, 411, 545, 629
DpnII	GATC	5 cut(s)	234, 267, 409, 543, 627
Eco130I	CCWWGG	4 cut(s)	39, 75, 622, 636
Eco147I	AGGCCT	1 cut(s)	660
Eco47I	GGWCC	3 cut(s)	35, 245, 614
Eco57I	CTGAAG	2 cut(s)	78, 683
Eco88I	CYCGRG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	4 cut(s)	39, 75, 622, 636
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	4 cut(s)	39, 75, 622, 636
Esp3I	CGTCTC	2 cut(s)	513, 545
FaeI	CATG	6 cut(s)	79, 172, 223, 379, 505, 626
FatI	CATG	6 cut(s)	75, 168, 219, 375, 501, 622
FauNDI	CATATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	543
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	618
Fsp4HI	GCNGC	1 cut(s)	90
GlaI	GCGC	2 cut(s)	145, 224
GluI	GCNGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	660
HapII	CCGG	4 cut(s)	66, 381, 536, 695
HhaI	GCGC	2 cut(s)	146, 225
Hin1II	CATG	6 cut(s)	79, 172, 223, 379, 505, 626
Hin6I	GCGC	2 cut(s)	144, 223
HinP1I	GCGC	2 cut(s)	144, 223
HincII	GTYRAC	2 cut(s)	82, 685
HindII	GTYRAC	2 cut(s)	82, 685
HindIII	AAGCTT	2 cut(s)	106, 329
HinfI	GANTC	3 cut(s)	593, 701, 714
HpaII	CCGG	4 cut(s)	66, 381, 536, 695
Hpy166II	GTNNAC	3 cut(s)	82, 445, 685
Hpy188I	TCNGA	3 cut(s)	117, 234, 267
Hpy188III	TCNNGA	9 cut(s)	248, 275, 344, 389, 413, 502, 518, 536, 617
Hpy8I	GTNNAC	3 cut(s)	82, 445, 685
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Hsp92II	CATG	6 cut(s)	79, 172, 223, 379, 505, 626
HspAI	GCGC	2 cut(s)	144, 223
Kpn2I	TCCGGA	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	543
Kzo9I	GATC	5 cut(s)	234, 267, 409, 543, 627
LmnI	GCTCC	2 cut(s)	118, 586
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	241, 481
MaeIII	GTNAC	3 cut(s)	203, 286, 511
MalI	GATC	5 cut(s)	236, 269, 411, 545, 629
MboI	GATC	5 cut(s)	234, 267, 409, 543, 627
MboII	GAAGA	4 cut(s)	73, 227, 337, 709
MflI	RGATCY	2 cut(s)	409, 627
MluCI	AATT	1 cut(s)	563
MlyI	GAGTC	3 cut(s)	602, 710, 723
MmeI	TCCRAC	1 cut(s)	648
MnlI	CCTC	6 cut(s)	82, 178, 356, 641, 644, 673
Mph1103I	ATGCAT	1 cut(s)	163
MroI	TCCGGA	1 cut(s)	535
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	3 cut(s)	120, 357, 724
MslI	CAYNNNNRTG	2 cut(s)	156, 198
MspI	CCGG	4 cut(s)	66, 381, 536, 695
MspR9I	CCNGG	2 cut(s)	48, 381
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	95
NciI	CCSGG	1 cut(s)	381
NcoI	CCATGG	2 cut(s)	75, 622
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	5 cut(s)	234, 267, 409, 543, 627
NlaIII	CATG	6 cut(s)	79, 172, 223, 379, 505, 626
NlaIV	GGNNCC	5 cut(s)	37, 45, 70, 615, 629
NmuCI	GTSAC	2 cut(s)	203, 286
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	516
PagI	TCATGA	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	660
PdmI	GAANNNNTTC	1 cut(s)	396
PflMI	CCANNNNNTGG	2 cut(s)	623, 637
PfoI	TCCNGGA	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	3 cut(s)	601, 709, 722
PpsI	GAGTC	3 cut(s)	601, 709, 722
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	5 cut(s)	37, 45, 70, 615, 629
PspPI	GGNCC	3 cut(s)	35, 245, 614
PstNI	CAGNNNCTG	1 cut(s)	232
PsuI	RGATCY	2 cut(s)	409, 627
RsaI	GTAC	2 cut(s)	102, 281
RsaNI	GTAC	2 cut(s)	101, 280
RseI	CAYNNNNRTG	2 cut(s)	156, 198
SaqAI	TTAA	3 cut(s)	120, 357, 724
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	5 cut(s)	234, 267, 409, 543, 627
Sau96I	GGNCC	3 cut(s)	35, 245, 614
SchI	GAGTC	3 cut(s)	602, 710, 723
ScrFI	CCNGG	2 cut(s)	48, 381
SetI	ASST	9 cut(s)	45, 74, 94, 110, 300, 333, 397, 480, 684
SfaNI	GCATC	2 cut(s)	241, 481
Sfr274I	CTCGAG	1 cut(s)	516
SinI	GGWCC	3 cut(s)	35, 245, 614
SlaI	CTCGAG	1 cut(s)	516
SmiMI	CAYNNNNRTG	2 cut(s)	156, 198
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	1 cut(s)	563
SseBI	AGGCCT	1 cut(s)	660
StuI	AGGCCT	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	46, 379
StyI	CCWWGG	4 cut(s)	39, 75, 622, 636
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	4 cut(s)	414, 462, 517, 575
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	563
TatI	WGTACW	1 cut(s)	279
Tru1I	TTAA	3 cut(s)	120, 357, 724
Tru9I	TTAA	3 cut(s)	120, 357, 724
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	2 cut(s)	203, 286
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	2 cut(s)	203, 286
TspDTI	ATGAA	4 cut(s)	5, 140, 364, 623
TspGWI	ACGGA	3 cut(s)	537, 569, 694
TspRI	CASTG	1 cut(s)	233
Van91I	CCANNNNNTGG	2 cut(s)	623, 637
VpaK11BI	GGWCC	3 cut(s)	35, 245, 614
XceI	RCATGY	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	516
XmnI	GAANNNNTTC	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.