Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015191

Physical Location & Seq

Genomic Coordinates Reverse (-)

1309572 .. 1310276

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1004300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCAACGACTCACGCACAGGTTCCCGGCGAGCCCACCCCGACGAGCATGGCCTTCCTTGAGACCGCGACAGCCGCGGTCCAAAACTTCAGCCCTATCAAAAGCATACACCAGCACCTTTGCGCCTTCCACTTCTACTCCCACGACATGACCCGCCAAGTTGAAGCACACCACTTCTGTGCCCACCAGAACGAAGAGATGCGTCAGTGCCTCATCTACGACAGCGAAGCTGCTGACGCCAAGCTCATCGGCCTCGAGTATATCATATCCGAGGCCCTCTTCCTCACCCTCCCGGACAGCGAGAAGCCGCTCTGGCACTCGCATGAATACGAGGTCAAGAGCGGGGTTCTCTTCATGCCCAGCGTTCCGGGTCCCATCGAGAGGCAAGACCTGGACAAGCTGTGCAAGACTTACGGGAAGACCATCCATTTTTGGCAGGTGGATAGGGGGGACGATTTGCCGCTCGGCATTCCGCAAATTATGCTGGCTTTAACTAGGGATGGACAGTTGCGACCGGAGCTCGCCAGAGACGTGGAGAGACGGTATGGGGTGAGTTTTGAGGAGGAGAGGGAGAAGCGAGCGTATATGGCGGGGCCGAATCTTGGGATGCATCCTTTGGCCAACGGAGGAGGAAAAGGGTTTAAGACTGAGCTCAAGGAGGTGGGCTGTATGCCTGTTGATTCTGTTCCCAGGGTCTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0010344 GO:0010876 GO:0019915 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051235 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1264

Protein Analysis

235

Amino Acids

26.38

Weight (kDa)

5.72

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1264	PF06884	30 - 196	1.2e-74	Protein of unknown function (DUF1264)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05510 AT2G31985
fragaria_vesca	FvH4_2g06270 FvH4_2g06270
malus_domestica	MD05G1004300.v1.1
prunus_persica	Prupe.8G007500_v2.0.a1
pyrus_communis	pycom05g00380
rosa_chinensis	RchiOBHm_Chr6g0256911
rosa_laevigata	RLG00000014656
rosa_multiflora	Rmu_sc0003076.1_g000030
rosa_roxburghii	Rroxscaffold_7G00208290
rosa_rugosa	Rorug05G0577000
rosa_samantha	Rh6AG095700 Rh6BG086500 Rh6DG078500
rosa_wichuraiana	Rw6G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	427
Acc36I	ACCTGC	1 cut(s)	427
AccBSI	CCGCTC	3 cut(s)	310, 342, 463
AccII	CGCG	2 cut(s)	68, 77
AciI	CCGC	9 cut(s)	66, 75, 77, 154, 308, 342, 461, 473, 590
AcoI	YGGCCR	1 cut(s)	618
AcuI	CTGAAG	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	381, 602
AgsI	TTSAA	1 cut(s)	164
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	2 cut(s)	390, 689
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	5 cut(s)	230, 244, 400, 520, 652
AluI	AGCT	5 cut(s)	230, 244, 400, 520, 652
Alw21I	GWGCWC	2 cut(s)	522, 654
Alw26I	GTCTC	3 cut(s)	56, 522, 532
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	5 cut(s)	51, 250, 273, 593, 618
ApeKI	GCWGC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	4 cut(s)	79, 274, 371, 593
AsuC2I	CCSGG	3 cut(s)	27, 293, 369
AsuHPI	GGTGA	2 cut(s)	277, 562
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	79, 371
BaeGI	GKGCMC	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	620
BanII	GRGCYC	3 cut(s)	36, 522, 654
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	2 cut(s)	522, 654
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	3 cut(s)	383, 431, 494
BciT130I	CCWGG	2 cut(s)	392, 691
BcnI	CCSGG	3 cut(s)	27, 293, 369
BcoDI	GTCTC	3 cut(s)	56, 522, 532
BfaI	CTAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	427
BglI	GCCNNNNNGGC	1 cut(s)	313
BisI	GCNGC	4 cut(s)	75, 231, 308, 461
BlsI	GCNGC	4 cut(s)	76, 232, 309, 462
Bme1390I	CCNGG	5 cut(s)	27, 293, 369, 392, 691
Bme18I	GGWCC	2 cut(s)	79, 371
BmeT110I	CYCGRG	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	4 cut(s)	79, 274, 371, 593
BmiI	GGNNCC	4 cut(s)	24, 372, 373, 594
BmrFI	CCNGG	5 cut(s)	27, 293, 369, 392, 691
BmsI	GCATC	3 cut(s)	189, 597, 619
BpiI	GAAGAC	1 cut(s)	425
BpuEI	CTTGAG	2 cut(s)	80, 638
BpuMI	CCSGG	3 cut(s)	27, 293, 369
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	4 cut(s)	75, 270, 689, 690
BsaWI	WCCGGW	1 cut(s)	514
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 527, 557
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 602
BseBI	CCWGG	2 cut(s)	392, 691
BseDI	CCNNGG	4 cut(s)	75, 270, 689, 690
BseGI	GGATG	4 cut(s)	423, 505, 610, 612
BseLI	CCNNNNNNNGG	2 cut(s)	381, 602
BseMII	CTCAG	1 cut(s)	639
BseRI	GAGGAG	3 cut(s)	575, 578, 642
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	217
BseYI	CCCAGC	1 cut(s)	359
Bsh1236I	CGCG	2 cut(s)	68, 77
Bsh1285I	CGRYCG	1 cut(s)	515
BshFI	GGCC	5 cut(s)	53, 252, 275, 595, 620
BsiEI	CGRYCG	1 cut(s)	515
BsiHKAI	GWGCWC	2 cut(s)	522, 654
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	4 cut(s)	27, 293, 368, 515
BslFI	GGGAC	2 cut(s)	357, 464
BslI	CCNNNNNNNGG	2 cut(s)	381, 602
BsmAI	GTCTC	3 cut(s)	56, 522, 532
BsmBI	CGTCTC	2 cut(s)	522, 532
BsmFI	GGGAC	2 cut(s)	357, 464
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	5 cut(s)	53, 252, 275, 595, 620
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	4 cut(s)	36, 184, 522, 654
BspACI	CCGC	9 cut(s)	66, 75, 77, 154, 308, 342, 461, 473, 590
BspANI	GGCC	5 cut(s)	53, 252, 275, 595, 620
BspCNI	CTCAG	1 cut(s)	640
BspFNI	CGCG	2 cut(s)	68, 77
BspLI	GGNNCC	4 cut(s)	24, 372, 373, 594
BspMI	ACCTGC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	56
BsrBI	CCGCTC	3 cut(s)	310, 342, 463
BssECI	CCNNGG	4 cut(s)	75, 270, 689, 690
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	392, 691
Bst4CI	ACNGT	2 cut(s)	507, 543
Bst6I	CTCTTC	3 cut(s)	189, 284, 356
BstACI	GRCGYC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	481
BstC8I	GCNNGC	4 cut(s)	32, 486, 522, 579
BstDEI	CTNAG	1 cut(s)	648
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	4 cut(s)	423, 505, 610, 612
BstFNI	CGCG	2 cut(s)	68, 77
BstHHI	GCGC	1 cut(s)	125
BstMAI	GTCTC	3 cut(s)	56, 522, 532
BstMCI	CGRYCG	1 cut(s)	515
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 236, 313, 481, 517, 587
BstNI	CCWGG	2 cut(s)	392, 691
BstSCI	CCNGG	5 cut(s)	25, 291, 367, 390, 689
BstSLI	GKGCMC	1 cut(s)	184
BstUI	CGCG	2 cut(s)	68, 77
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	425
BstXI	CCANNNNNNTGG	1 cut(s)	532
BsuRI	GGCC	5 cut(s)	53, 252, 275, 595, 620
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	532
BtsCI	GGATG	4 cut(s)	423, 505, 610, 612
BtsIMutI	CAGTG	1 cut(s)	212
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	4 cut(s)	32, 486, 522, 579
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	4 cut(s)	79, 274, 371, 593
Cfr42I	CCGCGG	1 cut(s)	78
CseI	GACGC	2 cut(s)	191, 245
CviAII	CATG	4 cut(s)	49, 148, 323, 355
DdeI	CTNAG	1 cut(s)	648
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	3 cut(s)	189, 284, 356
EarI	CTCTTC	3 cut(s)	189, 284, 356
Ecl136II	GAGCTC	2 cut(s)	520, 652
Eco24I	GRGCYC	3 cut(s)	36, 522, 654
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	79, 371
Eco53kI	GAGCTC	2 cut(s)	520, 652
Eco57I	CTGAAG	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	2 cut(s)	520, 652
EcoO109I	RGGNCCY	2 cut(s)	274, 371
EcoRII	CCWGG	2 cut(s)	390, 689
EcoT22I	ATGCAT	1 cut(s)	612
EcoT38I	GRGCYC	3 cut(s)	36, 522, 654
Esp3I	CGTCTC	2 cut(s)	522, 532
FaeI	CATG	4 cut(s)	52, 151, 326, 358
FaqI	GGGAC	2 cut(s)	357, 464
FatI	CATG	4 cut(s)	48, 147, 322, 354
FauI	CCCGC	3 cut(s)	161, 335, 583
Fnu4HI	GCNGC	4 cut(s)	75, 231, 308, 461
FokI	GGATG	4 cut(s)	410, 512, 597, 619
FriOI	GRGCYC	3 cut(s)	36, 522, 654
Fsp4HI	GCNGC	4 cut(s)	75, 231, 308, 461
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	4 cut(s)	75, 231, 308, 461
GsaI	CCCAGC	1 cut(s)	363
HaeIII	GGCC	5 cut(s)	53, 252, 275, 595, 620
HapII	CCGG	4 cut(s)	27, 293, 368, 515
HgaI	GACGC	2 cut(s)	191, 245
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	52, 151, 326, 358
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	3 cut(s)	10, 598, 680
HpaII	CCGG	4 cut(s)	27, 293, 368, 515
HphI	GGTGA	2 cut(s)	277, 562
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	2 cut(s)	337, 379
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	64, 136
HpyCH4III	ACNGT	2 cut(s)	507, 543
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	2 cut(s)	405, 610
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 236, 313, 481, 517, 587
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	52, 151, 326, 358
HspAI	GCGC	1 cut(s)	123
KflI	GGGWCCC	1 cut(s)	371
KspI	CCGCGG	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	3 cut(s)	189, 597, 619
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	531
MbiI	CCGCTC	3 cut(s)	310, 342, 463
MboII	GAAGA	4 cut(s)	206, 271, 343, 430
MhlI	GDGCHC	4 cut(s)	36, 184, 522, 654
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	4
Mox20I	TGGCCA	1 cut(s)	620
Mph1103I	ATGCAT	1 cut(s)	612
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	2 cut(s)	491, 642
MslI	CAYNNNNRTG	2 cut(s)	177, 321
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	4 cut(s)	27, 293, 368, 515
MspR9I	CCNGG	5 cut(s)	27, 293, 369, 392, 691
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	2 cut(s)	392, 691
MvnI	CGCG	2 cut(s)	68, 77
MwoI	GCNNNNNNNGC	6 cut(s)	74, 236, 313, 481, 517, 587
NciI	CCSGG	3 cut(s)	27, 293, 369
NlaIII	CATG	4 cut(s)	52, 151, 326, 358
NlaIV	GGNNCC	4 cut(s)	24, 372, 373, 594
NmeAIII	GCCGAG	1 cut(s)	444
NsiI	ATGCAT	1 cut(s)	612
OliI	CACNNNNGTG	1 cut(s)	177
PaeR7I	CTCGAG	1 cut(s)	254
PaqCI	CACCTGC	1 cut(s)	427
PasI	CCCWGGG	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	598, 680
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	76, 232, 309, 462
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PpuMI	RGGWCCY	1 cut(s)	371
Psp124BI	GAGCTC	2 cut(s)	522, 654
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	390, 689
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	2 cut(s)	390, 689
PspN4I	GGNNCC	4 cut(s)	24, 372, 373, 594
PspPI	GGNCC	4 cut(s)	79, 274, 371, 593
PspPPI	RGGWCCY	1 cut(s)	371
PspXI	VCTCGAGB	1 cut(s)	254
RseI	CAYNNNNRTG	2 cut(s)	177, 321
SacI	GAGCTC	2 cut(s)	522, 654
SacII	CCGCGG	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	491, 642
SatI	GCNGC	4 cut(s)	75, 231, 308, 461
Sau96I	GGNCC	4 cut(s)	79, 274, 371, 593
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	5 cut(s)	27, 293, 369, 392, 691
SduI	GDGCHC	4 cut(s)	36, 184, 522, 654
SfaNI	GCATC	3 cut(s)	189, 597, 619
Sfr274I	CTCGAG	1 cut(s)	254
Sfr303I	CCGCGG	1 cut(s)	78
SgrBI	CCGCGG	1 cut(s)	78
SinI	GGWCC	2 cut(s)	79, 371
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	177, 321
SmlI	CTYRAG	3 cut(s)	59, 254, 653
SmoI	CTYRAG	3 cut(s)	59, 254, 653
Sse9I	AATT	1 cut(s)	477
SsiI	CCGC	9 cut(s)	66, 75, 77, 154, 308, 342, 461, 473, 590
SspMI	CTAG	1 cut(s)	495
SstI	GAGCTC	2 cut(s)	522, 654
StyD4I	CCNGG	5 cut(s)	25, 291, 367, 390, 689
TaaI	ACNGT	2 cut(s)	507, 543
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	2 cut(s)	255, 378
TasI	AATT	1 cut(s)	477
TauI	GCSGC	3 cut(s)	77, 310, 463
TfiI	GAWTC	2 cut(s)	598, 680
Tru1I	TTAA	2 cut(s)	491, 642
Tru9I	TTAA	2 cut(s)	491, 642
TscAI	CASTG	1 cut(s)	212
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	339, 343
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	79, 371
XhoI	CTCGAG	1 cut(s)	254
XspI	CTAG	1 cut(s)	495
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.