Rw6G008150

Protein of unknown function (DUF1264)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015191
Physical Location & Seq
Reverse (-)
13849865 .. 13850902
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008150.1

Sequence Viewer

Length: 705 bp
ATGGCGACTAGTCACGCAGAAGTCCCCGGCGAGCCAACCCAGACCGGAACAGCCATCCTCGAAACCGCAACCGCCGCCATCCAAGGCTTCGGCCCCATCAACAAGATCCACCAGCACCTCTGCGCCTTCCACTTCTATGGCCACGACATGACACGTCAGGTCGAAGCCCACCATTTCTGCGGGCACCAGAATGAGGAGGTGCGTCAGTGCCTCATCTACGACAGCCCTGAGGCCGACGCTAAGCTCATCGGCCTCGAGTACCTCGTCTCGGAGAGACTCTTCTTGACTCTCCCTGACGACGAGAAGAAGCTGTGGCACTCTCACGAGTATGAGGTAAAGAGTGGGGTTTTGTTCATGCCTGGGGTGCCGGGTCCGATCCAGCGTCAGGATCTGGACAAGGTTTGTAAGACCTATGGGAAGGTGTTCCATTTCTGGCAGGTTGATAGGGGAGACAATCTACCTCTTGGGGTGCCACAGGTGATGTTGGCATTGACTAGGGATGGTCAGCTGTATGAGGATCTTGCTCGAAATGTGGAGAAGAGGTTTGGGATATCCTTTGAGAAGGAGAGGGAGAACCGAGCTTATATGACCGGGCCGACTCTCGGAGTGCATCCTTTGGCAAACGGAGGAGGAAAAGGGTTGAAGACGGAGCTGAGGGAGGTGGACGTTCAGCCGGTCGATTCTGTTCCGAGGGTCTTTGTCTGA

Protein Analysis

234

Amino Acids

26.3

Weight (kDa)

5.82

Isoelectric Point (pI)

30.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1264 PF06884 30 - 196 1.3e-74 Protein of unknown function (DUF1264)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05510 AT2G31985
fragaria_vesca FvH4_2g06270 FvH4_2g06270
malus_domestica MD05G1004300.v1.1
prunus_persica Prupe.8G007500_v2.0.a1
pyrus_communis pycom05g00380
rosa_chinensis RchiOBHm_Chr6g0256911
rosa_laevigata RLG00000014656
rosa_multiflora Rmu_sc0003076.1_g000030
rosa_roxburghii Rroxscaffold_7G00208290
rosa_rugosa Rorug05G0577000
rosa_samantha Rh6AG095700 Rh6BG086500 Rh6DG078500
rosa_wichuraiana Rw6G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 427
AccB1I GGYRCC 3 cut(s) 183, 364, 469
AciI CCGC 4 cut(s) 66, 72, 75, 180
AclWI GGATC 4 cut(s) 100, 370, 396, 525
AcoI YGGCCR 1 cut(s) 139
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 4 cut(s) 193, 268, 385, 602
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 1 cut(s) 643
AhlI ACTAGT 1 cut(s) 8
AjiI CACGTC 1 cut(s) 155
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 5 cut(s) 244, 310, 508, 581, 652
AluI AGCT 5 cut(s) 244, 310, 508, 581, 652
Alw26I GTCTC 3 cut(s) 268, 271, 444
AlwI GGATC 4 cut(s) 100, 370, 396, 525
AlwNI CAGNNNCTG 1 cut(s) 391
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 5 cut(s) 91, 139, 231, 250, 593
Asp700I GAANNNNTTC 1 cut(s) 422
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 3 cut(s) 92, 371, 593
AsuC2I CCSGG 3 cut(s) 27, 369, 592
AsuHPI GGTGA 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 1 cut(s) 371
AxyI CCTNAGG 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 186
BalI TGGCCA 1 cut(s) 141
BanI GGYRCC 3 cut(s) 183, 364, 469
BauI CACGAG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 650
BbvCI CCTCAGC 1 cut(s) 653
BccI CCATC 4 cut(s) 62, 86, 104, 494
BciT130I CCWGG 1 cut(s) 360
BcnI CCSGG 3 cut(s) 27, 369, 592
BcoDI GTCTC 3 cut(s) 268, 271, 444
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 495
BfuAI ACCTGC 1 cut(s) 427
BisI GCNGC 1 cut(s) 75
BlpI GCTNAGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 4 cut(s) 27, 360, 369, 592
Bme18I GGWCC 1 cut(s) 371
BmeT110I CYCGRG 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 155
BmgT120I GGNCC 3 cut(s) 92, 371, 593
BmiI GGNNCC 5 cut(s) 94, 185, 366, 372, 471
BmrFI CCNGG 4 cut(s) 27, 360, 369, 592
BmsI GCATC 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 650
Bpu10I CCTNAGC 1 cut(s) 653
Bpu1102I GCTNAGC 1 cut(s) 240
BpuMI CCSGG 3 cut(s) 27, 369, 592
BsaJI CCNNGG 4 cut(s) 25, 82, 359, 689
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 268, 385, 602
Bse118I RCCGGY 1 cut(s) 673
Bse21I CCTNAGG 1 cut(s) 228
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 4 cut(s) 25, 82, 359, 689
BseGI GGATG 4 cut(s) 54, 78, 505, 610
BseLI CCNNNNNNNGG 4 cut(s) 193, 268, 385, 602
BseMII CTCAG 2 cut(s) 219, 644
BseRI GAGGAG 2 cut(s) 209, 642
BseSI GKGCMC 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 5 cut(s) 93, 141, 233, 252, 595
BshNI GGYRCC 3 cut(s) 183, 364, 469
BsiEI CGRYCG 1 cut(s) 678
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 5 cut(s) 27, 45, 368, 591, 674
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 4 cut(s) 193, 268, 385, 602
BsmAI GTCTC 3 cut(s) 268, 271, 444
BsmBI CGTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 5 cut(s) 93, 141, 233, 252, 595
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 4 cut(s) 105, 375, 388, 517
Bsp1720I GCTNAGC 1 cut(s) 240
BspACI CCGC 4 cut(s) 66, 72, 75, 180
BspANI GGCC 5 cut(s) 93, 141, 233, 252, 595
BspCNI CTCAG 2 cut(s) 220, 645
BspLI GGNNCC 5 cut(s) 94, 185, 366, 372, 471
BspMI ACCTGC 1 cut(s) 427
BspPI GGATC 4 cut(s) 100, 370, 396, 525
BspT107I GGYRCC 3 cut(s) 183, 364, 469
BsrFI RCCGGY 1 cut(s) 673
BssAI RCCGGY 1 cut(s) 673
BssECI CCNNGG 4 cut(s) 25, 82, 359, 689
BssMI GATC 4 cut(s) 105, 375, 388, 517
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 360
Bst6I CTCTTC 2 cut(s) 284, 533
BstC8I GCNNGC 2 cut(s) 32, 182
BstDEI CTNAG 3 cut(s) 228, 240, 653
BstF5I GGATG 4 cut(s) 54, 78, 505, 610
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 4 cut(s) 108, 378, 391, 520
BstMAI GTCTC 3 cut(s) 268, 271, 444
BstMBI GATC 4 cut(s) 105, 375, 388, 517
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 2 cut(s) 74, 364
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 4 cut(s) 25, 358, 367, 590
BstSLI GKGCMC 1 cut(s) 186
BstV2I GAAGAC 1 cut(s) 650
BstX2I RGATCY 3 cut(s) 105, 388, 517
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 3 cut(s) 105, 388, 517
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 5 cut(s) 93, 141, 233, 252, 595
BtrI CACGTC 1 cut(s) 155
BtsCI GGATG 4 cut(s) 54, 78, 505, 610
BtsIMutI CAGTG 1 cut(s) 212
BveI ACCTGC 1 cut(s) 427
Cac8I GCNNGC 2 cut(s) 32, 182
CaiI CAGNNNCTG 1 cut(s) 391
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 673
Cfr13I GGNCC 3 cut(s) 92, 371, 593
CseI GACGC 3 cut(s) 191, 245, 371
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 148, 355
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 3 cut(s) 228, 240, 653
DpnI GATC 4 cut(s) 107, 377, 390, 519
DpnII GATC 4 cut(s) 105, 375, 388, 517
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 284, 533
EarI CTCTTC 2 cut(s) 284, 533
Eco130I CCWWGG 1 cut(s) 82
Eco32I GATATC 1 cut(s) 552
Eco47I GGWCC 1 cut(s) 371
Eco81I CCTNAGG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 358
EcoRV GATATC 1 cut(s) 552
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
Esp3I CGTCTC 1 cut(s) 271
FaeI CATG 2 cut(s) 151, 358
FaiI YATR 8 cut(s) 138, 149, 330, 356, 414, 513, 585, 587
FaqI GGGAC 1 cut(s) 8
FatI CATG 2 cut(s) 147, 354
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 4 cut(s) 41, 65, 512, 597
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 2 cut(s) 9, 495
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 5 cut(s) 93, 141, 233, 252, 595
HapII CCGG 5 cut(s) 27, 45, 368, 591, 674
HgaI GACGC 3 cut(s) 191, 245, 371
HhaI GCGC 1 cut(s) 125
Hin1II CATG 2 cut(s) 151, 358
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 4 cut(s) 276, 286, 598, 680
HpaII CCGG 5 cut(s) 27, 45, 368, 591, 674
HphI GGTGA 1 cut(s) 490
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 5 cut(s) 271, 375, 605, 690, 704
Hpy188III TCNNGA 4 cut(s) 283, 323, 386, 392
Hpy8I GTNNAC 1 cut(s) 664
Hpy99I CGWCG 2 cut(s) 239, 302
HpyAV CCTTC 3 cut(s) 136, 412, 556
HpyCH4IV ACGT 2 cut(s) 154, 666
HpyCH4V TGCA 1 cut(s) 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 364
HpyF3I CTNAG 3 cut(s) 228, 240, 653
HpySE526I ACGT 2 cut(s) 154, 666
Hsp92II CATG 2 cut(s) 151, 358
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 4 cut(s) 105, 375, 388, 517
LmnI GCTCC 1 cut(s) 649
LweI GCATC 1 cut(s) 619
MaeI CTAG 2 cut(s) 9, 495
MaeII ACGT 2 cut(s) 154, 666
MaeIII GTNAC 1 cut(s) 11
MalI GATC 4 cut(s) 107, 377, 390, 519
MboI GATC 4 cut(s) 105, 375, 388, 517
MboII GAAGA 4 cut(s) 271, 316, 550, 655
MflI RGATCY 3 cut(s) 105, 388, 517
MhlI GDGCHC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 3 cut(s) 270, 280, 592
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 422
MscI TGGCCA 1 cut(s) 141
MslI CAYNNNNRTG 3 cut(s) 135, 189, 327
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 508
MspI CCGG 5 cut(s) 27, 45, 368, 591, 674
MspR9I CCNGG 4 cut(s) 27, 360, 369, 592
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 74, 364
NciI CCSGG 3 cut(s) 27, 369, 592
NdeII GATC 4 cut(s) 105, 375, 388, 517
NlaIII CATG 2 cut(s) 151, 358
NlaIV GGNNCC 5 cut(s) 94, 185, 366, 372, 471
NmuCI GTSAC 1 cut(s) 11
PaeR7I CTCGAG 1 cut(s) 254
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 680
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 3 cut(s) 270, 280, 592
PpsI GAGTC 3 cut(s) 270, 280, 592
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 5 cut(s) 94, 185, 366, 372, 471
PspPI GGNCC 3 cut(s) 92, 371, 593
PspXI VCTCGAGB 1 cut(s) 254
PstNI CAGNNNCTG 1 cut(s) 391
PsuI RGATCY 3 cut(s) 105, 388, 517
PvuII CAGCTG 1 cut(s) 508
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 3 cut(s) 135, 189, 327
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 4 cut(s) 105, 375, 388, 517
Sau96I GGNCC 3 cut(s) 92, 371, 593
SchI GAGTC 3 cut(s) 270, 280, 592
ScrFI CCNGG 4 cut(s) 27, 360, 369, 592
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 1 cut(s) 619
Sfr274I CTCGAG 1 cut(s) 254
SinI GGWCC 1 cut(s) 371
SlaI CTCGAG 1 cut(s) 254
SmiMI CAYNNNNRTG 3 cut(s) 135, 189, 327
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SpeI ACTAGT 1 cut(s) 8
SsiI CCGC 4 cut(s) 66, 72, 75, 180
SspMI CTAG 2 cut(s) 9, 495
StyD4I CCNGG 4 cut(s) 25, 358, 367, 590
StyI CCWWGG 1 cut(s) 82
TaiI ACGT 2 cut(s) 157, 669
TaqI TCGA 5 cut(s) 60, 162, 255, 526, 678
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 1 cut(s) 680
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 343
TspGWI ACGGA 2 cut(s) 639, 662
TspRI CASTG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 371
XhoI CTCGAG 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 2 cut(s) 9, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.