Rorug05G0577000

Protein of unknown function (DUF1264)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015191
Physical Location & Seq
Forward (+)
77331743 .. 77333012
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0577000.1

Sequence Viewer

Length: 1167 bp
ATGTTGTCAGGGTCTATCCCCTCATCGGTTTGTCATAATTCTTCACCCTTCATTACGTTATTGGACTTCTCCTTCAACAATTTCAGTGGCAGTATATCTCATGGAATAGGGGAGTGTTCCCAACTAAAGGTTTTTCGTGCCGGGAACAATAACCTTTCGGGATTACTTCCACAAGATATCTATAATGCTACCATGCTTGAAGAAGTTGCATTACCATTCAATTTTCTTAATGGAGTCATTAGTGATAGAATCGTCAACCTCACCAACCTCGCAATTCTTGACCTCCACTTTAATCAATTGAGTGGCATGATCCCCCTACACATTGGGAAACTCTCCAAGTTGAAACTCTTGTTCCTTCATTTCAACAATTTCGAAGGTTCTGTACCCCCATCTCTGATGAATTGCTCTAACCTTAGAGAGCTGAATCTTGGAATCAACTATCTGGAAGGAAATATCTCTACCCTTAATTTCTCGAGACTAAGTAAACTTAGTAAACTTGATCTTGGTCAGAATCTGCTCACTGGTATCTTACCAAGTAGCCTTTACTCATGCCGGTCTCTTAGAGCAATTCGACTGAGTCATAACGATTTAGAAGGAGAAATTCAACCTGAGATTCTATCATTGACATCCTTGTCCTTCCTCTCGCTCGGTTTCAATAGGTTGACCAATATCTCAAGGGCAATGAGGATATTGGGGCGTTGCAAAAGTCTTGTATACTTATCCTTCGCCTTTGGTTTTCGAGGTGGGGAGTTGCCGGCTGATCTTGGCGTGGTTGATTTTGATGGACTACAAAATCTTCGGCTTTTGGCTTTAGATGATTGTGGCTTCACTGGTCAAATACCTGTATGGTTATCTAAGGCTCCAGTCCTAATTTCAGGTGAATTTCCAAAGGAACTTTGTAGGCTCCCGATGTGGGTATCCGAAAAGACTGCTAATCAAGAGGATGATATCGAGCTTGAATTGCCTGTCTATGGATCCCGAGGTCCAACAGTGTTTGTACAATACACATTGTCTTACTTTCCTCCTGCAATGGACTTAAAGAGTAATAACATTAGTGGTAGCATACCTATTGAGATTGGCCAATTGCGGCTTCTCCGTCATTTTTGGATCTTAGCAACAACAACTTCTCAGGAAATTAAACATTCCAGAGCAGATATCAAACCTTAA

Protein Analysis

388

Amino Acids

42.94

Weight (kDa)

6.45

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 136 - 197 3.1e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05510 AT2G31985
fragaria_vesca FvH4_2g06270 FvH4_2g06270
malus_domestica MD05G1004300.v1.1
prunus_persica Prupe.8G007500_v2.0.a1
pyrus_communis pycom05g00380
rosa_chinensis RchiOBHm_Chr6g0256911
rosa_laevigata RLG00000014656
rosa_multiflora Rmu_sc0003076.1_g000030
rosa_roxburghii Rroxscaffold_7G00208290
rosa_rugosa Rorug05G0577000
rosa_samantha Rh6AG095700 Rh6BG086500 Rh6DG078500
rosa_wichuraiana Rw6G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 631
AccI GTMKAC 1 cut(s) 714
AciI CCGC 1 cut(s) 1087
AclWI GGATC 4 cut(s) 304, 969, 982, 1115
AcoI YGGCCR 1 cut(s) 1078
AcsI RAATTY 2 cut(s) 600, 881
AfaI GTAC 2 cut(s) 384, 999
AfiI CCNNNNNNNGG 4 cut(s) 25, 127, 913, 971
AgsI TTSAA 8 cut(s) 76, 200, 220, 343, 364, 605, 655, 959
AjuI GAANNNNNNNTTGG 2 cut(s) 1074, 1106
AluBI AGCT 2 cut(s) 421, 955
AluI AGCT 2 cut(s) 421, 955
Alw26I GTCTC 2 cut(s) 469, 561
AlwI GGATC 4 cut(s) 304, 969, 982, 1115
AlwNI CAGNNNCTG 1 cut(s) 514
Ama87I CYCGRG 2 cut(s) 472, 978
AoxI GGCC 1 cut(s) 1078
ApoI RAATTY 2 cut(s) 600, 881
AspS9I GGNCC 1 cut(s) 983
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 3 cut(s) 36, 253, 890
AsuII TTCGAA 1 cut(s) 372
AvaI CYCGRG 2 cut(s) 472, 978
AvaII GGWCC 1 cut(s) 983
BalI TGGCCA 1 cut(s) 1080
BamHI GGATCC 1 cut(s) 974
BarI GAAGNNNNNNTAC 4 cut(s) 195, 227, 366, 398
BccI CCATC 2 cut(s) 397, 776
BcgI CGANNNNNNTGC 2 cut(s) 911, 945
BciVI GTATCC 1 cut(s) 928
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 469, 561
BfuI GTATCC 1 cut(s) 928
BisI GCNGC 1 cut(s) 1088
BlsI GCNGC 1 cut(s) 1089
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 983
BmeT110I CYCGRG 2 cut(s) 472, 978
BmgT120I GGNCC 1 cut(s) 983
BmiI GGNNCC 3 cut(s) 861, 905, 976
BmrFI CCNGG 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 846
Bpu14I TTCGAA 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 658
BpuMI CCSGG 1 cut(s) 142
BsaI GGTCTC 1 cut(s) 561
BsaJI CCNNGG 1 cut(s) 979
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 127, 913, 971
Bse118I RCCGGY 2 cut(s) 552, 754
Bse1I ACTGG 3 cut(s) 526, 835, 863
Bse3DI GCAATG 2 cut(s) 687, 1035
BseDI CCNNGG 1 cut(s) 979
BseGI GGATG 2 cut(s) 626, 949
BseLI CCNNNNNNNGG 4 cut(s) 25, 127, 913, 971
BseMI GCAATG 2 cut(s) 687, 1035
BseMII CTCAG 3 cut(s) 566, 600, 1142
BseNI ACTGG 3 cut(s) 526, 835, 863
BshFI GGCC 1 cut(s) 1080
BsiHKCI CYCGRG 2 cut(s) 472, 978
BsiSI CCGG 3 cut(s) 141, 553, 755
BslI CCNNNNNNNGG 4 cut(s) 25, 127, 913, 971
BsmAI GTCTC 2 cut(s) 469, 561
BsnI GGCC 1 cut(s) 1080
Bso31I GGTCTC 1 cut(s) 561
BsoBI CYCGRG 2 cut(s) 472, 978
Bsp119I TTCGAA 1 cut(s) 372
Bsp1407I TGTACA 1 cut(s) 997
Bsp143I GATC 5 cut(s) 309, 499, 760, 974, 1107
BspACI CCGC 1 cut(s) 1087
BspANI GGCC 1 cut(s) 1080
BspCNI CTCAG 3 cut(s) 567, 601, 1141
BspLI GGNNCC 3 cut(s) 861, 905, 976
BspPI GGATC 4 cut(s) 304, 969, 982, 1115
BspT104I TTCGAA 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 561
BsrDI GCAATG 2 cut(s) 687, 1035
BsrFI RCCGGY 2 cut(s) 552, 754
BsrGI TGTACA 1 cut(s) 997
BsrI ACTGG 3 cut(s) 526, 835, 863
BssAI RCCGGY 2 cut(s) 552, 754
BssECI CCNNGG 1 cut(s) 979
BssMI GATC 5 cut(s) 309, 499, 760, 974, 1107
BssNAI GTATAC 1 cut(s) 715
Bst1107I GTATAC 1 cut(s) 715
Bst4CI ACNGT 1 cut(s) 991
BstAUI TGTACA 1 cut(s) 997
BstBI TTCGAA 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 756
BstDEI CTNAG 9 cut(s) 413, 479, 488, 560, 575, 609, 855, 1111, 1128
BstF5I GGATG 2 cut(s) 626, 949
BstKTI GATC 5 cut(s) 312, 502, 763, 977, 1110
BstMAI GTCTC 2 cut(s) 469, 561
BstMBI GATC 5 cut(s) 309, 499, 760, 974, 1107
BstMWI GCNNNNNNNGC 1 cut(s) 961
BstSCI CCNGG 1 cut(s) 140
BstX2I RGATCY 2 cut(s) 974, 1107
BstYI RGATCY 2 cut(s) 974, 1107
BstZ17I GTATAC 1 cut(s) 715
BsuI GTATCC 1 cut(s) 928
BsuRI GGCC 1 cut(s) 1080
BtsCI GGATG 2 cut(s) 626, 949
BtsIMutI CAGTG 4 cut(s) 91, 519, 828, 996
Cac8I GCNNGC 1 cut(s) 756
CaiI CAGNNNCTG 1 cut(s) 514
Cfr10I RCCGGY 2 cut(s) 552, 754
Cfr13I GGNCC 1 cut(s) 983
Csp6I GTAC 2 cut(s) 383, 998
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 4 cut(s) 101, 193, 307, 549
CviQI GTAC 2 cut(s) 383, 998
DdeI CTNAG 9 cut(s) 413, 479, 488, 560, 575, 609, 855, 1111, 1128
DpnI GATC 5 cut(s) 311, 501, 762, 976, 1109
DpnII GATC 5 cut(s) 309, 499, 760, 974, 1107
DrdI GACNNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 631
EaeI YGGCCR 1 cut(s) 1078
Eco31I GGTCTC 1 cut(s) 561
Eco32I GATATC 3 cut(s) 178, 949, 1156
Eco47I GGWCC 1 cut(s) 983
Eco88I CYCGRG 2 cut(s) 472, 978
EcoRV GATATC 3 cut(s) 178, 949, 1156
FaeI CATG 4 cut(s) 104, 196, 310, 552
FatI CATG 4 cut(s) 100, 192, 306, 548
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 1 cut(s) 1088
FokI GGATG 2 cut(s) 613, 956
Fsp4HI GCNGC 1 cut(s) 1088
GluI GCNGC 1 cut(s) 1088
GsuI CTGGAG 1 cut(s) 846
HaeIII GGCC 1 cut(s) 1080
HapII CCGG 3 cut(s) 141, 553, 755
Hin1II CATG 4 cut(s) 104, 196, 310, 552
HincII GTYRAC 2 cut(s) 256, 663
HindII GTYRAC 2 cut(s) 256, 663
HinfI GANTC 7 cut(s) 234, 249, 424, 432, 511, 577, 613
HpaII CCGG 3 cut(s) 141, 553, 755
HphI GGTGA 3 cut(s) 36, 253, 890
Hpy166II GTNNAC 5 cut(s) 256, 485, 494, 663, 715
Hpy188I TCNGA 3 cut(s) 396, 510, 922
Hpy8I GTNNAC 5 cut(s) 256, 485, 494, 663, 715
HpyAV CCTTC 8 cut(s) 58, 82, 365, 368, 440, 587, 646, 733
HpyCH4III ACNGT 1 cut(s) 991
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 3 cut(s) 209, 702, 1028
HpyF10VI GCNNNNNNNGC 1 cut(s) 961
HpyF3I CTNAG 9 cut(s) 413, 479, 488, 560, 575, 609, 855, 1111, 1128
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 4 cut(s) 104, 196, 310, 552
KroI GCCGGC 1 cut(s) 754
KroNI GCCGGC 1 cut(s) 756
Kzo9I GATC 5 cut(s) 309, 499, 760, 974, 1107
LmnI GCTCC 2 cut(s) 865, 909
MaeII ACGT 1 cut(s) 56
MalI GATC 5 cut(s) 311, 501, 762, 976, 1109
MboI GATC 5 cut(s) 309, 499, 760, 974, 1107
MboII GAAGA 3 cut(s) 33, 212, 788
MfeI CAATTG 2 cut(s) 296, 1082
MflI RGATCY 2 cut(s) 974, 1107
MlsI TGGCCA 1 cut(s) 1080
MluNI TGGCCA 1 cut(s) 1080
MlyI GAGTC 2 cut(s) 243, 586
MmeI TCCRAC 1 cut(s) 1010
Mox20I TGGCCA 1 cut(s) 1080
MroNI GCCGGC 1 cut(s) 754
MscI TGGCCA 1 cut(s) 1080
MseI TTAA 6 cut(s) 228, 291, 465, 1037, 1137, 1165
Msp20I TGGCCA 1 cut(s) 1080
MspI CCGG 3 cut(s) 141, 553, 755
MspR9I CCNGG 1 cut(s) 142
MunI CAATTG 2 cut(s) 296, 1082
MwoI GCNNNNNNNGC 1 cut(s) 961
NaeI GCCGGC 1 cut(s) 756
NciI CCSGG 1 cut(s) 142
NdeII GATC 5 cut(s) 309, 499, 760, 974, 1107
NgoMIV GCCGGC 1 cut(s) 754
NlaIII CATG 4 cut(s) 104, 196, 310, 552
NlaIV GGNNCC 3 cut(s) 861, 905, 976
NspV TTCGAA 1 cut(s) 372
PaeR7I CTCGAG 1 cut(s) 472
PdiI GCCGGC 1 cut(s) 756
PfeI GAWTC 5 cut(s) 249, 424, 432, 511, 613
PflFI GACNNNGTC 1 cut(s) 576
PkrI GCNGC 1 cut(s) 1089
PleI GAGTC 2 cut(s) 242, 585
PpsI GAGTC 2 cut(s) 242, 585
PspN4I GGNNCC 3 cut(s) 861, 905, 976
PspPI GGNCC 1 cut(s) 983
PstNI CAGNNNCTG 1 cut(s) 514
PsuI RGATCY 2 cut(s) 974, 1107
PsyI GACNNNGTC 1 cut(s) 576
RsaI GTAC 2 cut(s) 384, 999
RsaNI GTAC 2 cut(s) 383, 998
SaqAI TTAA 6 cut(s) 228, 291, 465, 1037, 1137, 1165
SatI GCNGC 1 cut(s) 1088
Sau3AI GATC 5 cut(s) 309, 499, 760, 974, 1107
Sau96I GGNCC 1 cut(s) 983
SchI GAGTC 2 cut(s) 243, 586
ScrFI CCNGG 1 cut(s) 142
Sfr274I CTCGAG 1 cut(s) 472
SfuI TTCGAA 1 cut(s) 372
SinI GGWCC 1 cut(s) 983
SlaI CTCGAG 1 cut(s) 472
SmlI CTYRAG 2 cut(s) 472, 673
SmoI CTYRAG 2 cut(s) 472, 673
SsiI CCGC 1 cut(s) 1087
StyD4I CCNGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 991
TaiI ACGT 1 cut(s) 59
TaqI TCGA 5 cut(s) 372, 473, 571, 739, 951
TatI WGTACW 1 cut(s) 997
TauI GCSGC 1 cut(s) 1090
TfiI GAWTC 5 cut(s) 249, 424, 432, 511, 613
Tru1I TTAA 6 cut(s) 228, 291, 465, 1037, 1137, 1165
Tru9I TTAA 6 cut(s) 228, 291, 465, 1037, 1137, 1165
TscAI CASTG 4 cut(s) 91, 526, 835, 996
TspDTI ATGAA 3 cut(s) 40, 347, 413
TspGWI ACGGA 1 cut(s) 1085
TspRI CASTG 4 cut(s) 91, 526, 835, 996
Tth111I GACNNNGTC 1 cut(s) 576
VpaK11BI GGWCC 1 cut(s) 983
XapI RAATTY 2 cut(s) 600, 881
XhoI CTCGAG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.