Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0015191

Physical Location & Seq

Genomic Coordinates Forward (+)

416562 .. 417266

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCAACGACTCACGCACAGGTTCCCGGCGAGCCAACCCCGACGAGCATGGCCTTCCTTGAGACCGGGACAGCCGCGGTCCAAAACTTCAGCCCTATCAAAAGCATCCACCAGCACCTTTGCGCCTTCCACTTCTACTCCAACGACATGACCCGCCAAGTTGAAGCACACCACTTCTGTGCCCACCAGAACGAAGAGATGCGTCAGTGCCTCATCTACGACAGCGAAGCTGCTGACGCCAAGCTCATCGGCCTCGAGTATCTCATATCCGAGGCTCTCTTCCTCAAACTCCCGGACAGCGAGAAGCCGCTCTGGCACTCGCATGAATACGAGGTCAAGAGCGGGGTTCTCTTCATGCCCGGGGTTCCGGGTCCCATCGAGAGGCAAGACCTGGACAAGCTGTGCAAGACTTACGGGAAGACCATCCATTTTTGGCAGGTGGATAGGGGGCACGATTTGCCGCTCGGTATTCCGCAAATTATGCTGGCTTTAACTAGGGATGGACAGTTGCGACCGGAGCTCGCGAGAGACGTGGAGAGGCGGTATGGGGTGAGTTTTGAGGAGGAGAGGGAGAAGCGAGCGTATATGGCGGGGCCGAATCTTGGGATTCATCCTTTGGCCAACGGAGAAGGAAAAGGGTTTAAGACTGAGCTCAAGGAGGCGGGCTGTATGCCTGTTGATTCTGTTCCCAGGGTCTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005811 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0010344 GO:0010876 GO:0019915 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033993 GO:0042221 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051235 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1264

Protein Analysis

235

Amino Acids

26.39

Weight (kDa)

5.83

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1264	PF06884	30 - 196	1.3e-73	Protein of unknown function (DUF1264)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05510 AT2G31985
fragaria_vesca	FvH4_2g06270 FvH4_2g06270
malus_domestica	MD05G1004300.v1.1
prunus_persica	Prupe.8G007500_v2.0.a1
pyrus_communis	pycom05g00380
rosa_chinensis	RchiOBHm_Chr6g0256911
rosa_laevigata	RLG00000014656
rosa_multiflora	Rmu_sc0003076.1_g000030
rosa_roxburghii	Rroxscaffold_7G00208290
rosa_rugosa	Rorug05G0577000
rosa_samantha	Rh6AG095700 Rh6BG086500 Rh6DG078500
rosa_wichuraiana	Rw6G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	427
Acc36I	ACCTGC	1 cut(s)	427
AccBSI	CCGCTC	3 cut(s)	310, 342, 463
AccII	CGCG	2 cut(s)	77, 524
AcoI	YGGCCR	1 cut(s)	618
AcuI	CTGAAG	1 cut(s)	73
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	381, 602
AgsI	TTSAA	1 cut(s)	164
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	2 cut(s)	390, 689
AleI	CACNNNNGTG	1 cut(s)	177
AluBI	AGCT	5 cut(s)	230, 244, 400, 520, 652
AluI	AGCT	5 cut(s)	230, 244, 400, 520, 652
Alw21I	GWGCWC	2 cut(s)	522, 654
Alw26I	GTCTC	2 cut(s)	56, 522
Ama87I	CYCGRG	2 cut(s)	254, 359
AoxI	GGCC	4 cut(s)	51, 250, 593, 618
ApeKI	GCWGC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	3 cut(s)	79, 371, 593
AsuC2I	CCSGG	6 cut(s)	27, 67, 293, 360, 361, 369
AsuHPI	GGTGA	1 cut(s)	562
AvaI	CYCGRG	2 cut(s)	254, 359
AvaII	GGWCC	2 cut(s)	79, 371
BaeGI	GKGCMC	2 cut(s)	184, 453
BalI	TGGCCA	1 cut(s)	620
BanII	GRGCYC	2 cut(s)	522, 654
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	2 cut(s)	522, 654
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	3 cut(s)	383, 431, 494
BciT130I	CCWGG	2 cut(s)	392, 691
BcnI	CCSGG	6 cut(s)	27, 67, 293, 360, 361, 369
BcoDI	GTCTC	2 cut(s)	56, 522
BfaI	CTAG	1 cut(s)	495
BfuAI	ACCTGC	1 cut(s)	427
BglI	GCCNNNNNGGC	1 cut(s)	313
BisI	GCNGC	4 cut(s)	75, 231, 308, 461
BlsI	GCNGC	4 cut(s)	76, 232, 309, 462
Bme1390I	CCNGG	8 cut(s)	27, 67, 293, 360, 361, 369, 392, 691
Bme18I	GGWCC	2 cut(s)	79, 371
BmeT110I	CYCGRG	2 cut(s)	254, 359
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	3 cut(s)	79, 371, 593
BmiI	GGNNCC	5 cut(s)	24, 366, 372, 373, 594
BmrFI	CCNGG	8 cut(s)	27, 67, 293, 360, 361, 369, 392, 691
BmsI	GCATC	2 cut(s)	114, 189
BpiI	GAAGAC	1 cut(s)	425
BpuEI	CTTGAG	2 cut(s)	80, 638
BpuMI	CCSGG	6 cut(s)	27, 67, 293, 360, 361, 369
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	6 cut(s)	75, 270, 359, 360, 689, 690
BsaWI	WCCGGW	1 cut(s)	514
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 527, 557
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 602
BseBI	CCWGG	2 cut(s)	392, 691
BseDI	CCNNGG	6 cut(s)	75, 270, 359, 360, 689, 690
BseGI	GGATG	4 cut(s)	105, 423, 505, 610
BseLI	CCNNNNNNNGG	2 cut(s)	381, 602
BseMII	CTCAG	1 cut(s)	639
BseRI	GAGGAG	2 cut(s)	575, 578
BseSI	GKGCMC	2 cut(s)	184, 453
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	2 cut(s)	77, 524
Bsh1285I	CGRYCG	1 cut(s)	515
BshFI	GGCC	4 cut(s)	53, 252, 595, 620
BsiEI	CGRYCG	1 cut(s)	515
BsiHKAI	GWGCWC	2 cut(s)	522, 654
BsiHKCI	CYCGRG	2 cut(s)	254, 359
BsiSI	CCGG	6 cut(s)	27, 66, 293, 360, 368, 515
BslFI	GGGAC	2 cut(s)	82, 357
BslI	CCNNNNNNNGG	2 cut(s)	381, 602
BsmAI	GTCTC	2 cut(s)	56, 522
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	2 cut(s)	82, 357
BsnI	GGCC	4 cut(s)	53, 252, 595, 620
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	2 cut(s)	254, 359
Bsp1286I	GDGCHC	4 cut(s)	184, 453, 522, 654
Bsp68I	TCGCGA	1 cut(s)	524
BspANI	GGCC	4 cut(s)	53, 252, 595, 620
BspCNI	CTCAG	1 cut(s)	640
BspFNI	CGCG	2 cut(s)	77, 524
BspLI	GGNNCC	5 cut(s)	24, 366, 372, 373, 594
BspMI	ACCTGC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	56
BsrBI	CCGCTC	3 cut(s)	310, 342, 463
BssECI	CCNNGG	6 cut(s)	75, 270, 359, 360, 689, 690
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	392, 691
Bst4CI	ACNGT	1 cut(s)	507
Bst6I	CTCTTC	3 cut(s)	189, 284, 356
BstACI	GRCGYC	1 cut(s)	237
BstAPI	GCANNNNNTGC	2 cut(s)	457, 481
BstC8I	GCNNGC	5 cut(s)	32, 486, 522, 579, 664
BstDEI	CTNAG	1 cut(s)	648
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	4 cut(s)	105, 423, 505, 610
BstFNI	CGCG	2 cut(s)	77, 524
BstHHI	GCGC	1 cut(s)	125
BstMAI	GTCTC	2 cut(s)	56, 522
BstMCI	CGRYCG	1 cut(s)	515
BstMWI	GCNNNNNNNGC	6 cut(s)	236, 313, 457, 481, 517, 587
BstNI	CCWGG	2 cut(s)	392, 691
BstSCI	CCNGG	8 cut(s)	25, 65, 291, 358, 359, 367, 390, 689
BstSLI	GKGCMC	2 cut(s)	184, 453
BstUI	CGCG	2 cut(s)	77, 524
BstV1I	GCAGC	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	425
BsuRI	GGCC	4 cut(s)	53, 252, 595, 620
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	532
BtsCI	GGATG	4 cut(s)	105, 423, 505, 610
BtsIMutI	CAGTG	1 cut(s)	212
BtuMI	TCGCGA	1 cut(s)	524
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	5 cut(s)	32, 486, 522, 579, 664
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	3 cut(s)	79, 371, 593
Cfr42I	CCGCGG	1 cut(s)	78
Cfr9I	CCCGGG	1 cut(s)	359
CseI	GACGC	2 cut(s)	191, 245
CviAII	CATG	4 cut(s)	49, 148, 323, 355
DdeI	CTNAG	1 cut(s)	648
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	3 cut(s)	189, 284, 356
EarI	CTCTTC	3 cut(s)	189, 284, 356
Ecl136II	GAGCTC	2 cut(s)	520, 652
Eco24I	GRGCYC	2 cut(s)	522, 654
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	79, 371
Eco53kI	GAGCTC	2 cut(s)	520, 652
Eco57I	CTGAAG	1 cut(s)	73
Eco88I	CYCGRG	2 cut(s)	254, 359
EcoICRI	GAGCTC	2 cut(s)	520, 652
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	390, 689
EcoT38I	GRGCYC	2 cut(s)	522, 654
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	4 cut(s)	52, 151, 326, 358
FaqI	GGGAC	2 cut(s)	82, 357
FatI	CATG	4 cut(s)	48, 147, 322, 354
FauI	CCCGC	4 cut(s)	161, 335, 583, 655
Fnu4HI	GCNGC	4 cut(s)	75, 231, 308, 461
FokI	GGATG	4 cut(s)	92, 410, 512, 597
FriOI	GRGCYC	2 cut(s)	522, 654
Fsp4HI	GCNGC	4 cut(s)	75, 231, 308, 461
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	4 cut(s)	75, 231, 308, 461
HaeIII	GGCC	4 cut(s)	53, 252, 595, 620
HapII	CCGG	6 cut(s)	27, 66, 293, 360, 368, 515
HgaI	GACGC	2 cut(s)	191, 245
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	52, 151, 326, 358
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HinfI	GANTC	4 cut(s)	10, 598, 607, 680
HpaII	CCGG	6 cut(s)	27, 66, 293, 360, 368, 515
HphI	GGTGA	1 cut(s)	562
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	3 cut(s)	337, 379, 523
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	64, 136, 623
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	6 cut(s)	236, 313, 457, 481, 517, 587
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	52, 151, 326, 358
HspAI	GCGC	1 cut(s)	123
KflI	GGGWCCC	1 cut(s)	371
KspI	CCGCGG	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	2 cut(s)	114, 189
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	531
MbiI	CCGCTC	3 cut(s)	310, 342, 463
MboII	GAAGA	4 cut(s)	206, 271, 343, 430
MhlI	GDGCHC	4 cut(s)	184, 453, 522, 654
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	1 cut(s)	477
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	165
Mox20I	TGGCCA	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	2 cut(s)	491, 642
MslI	CAYNNNNRTG	2 cut(s)	177, 321
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	6 cut(s)	27, 66, 293, 360, 368, 515
MspR9I	CCNGG	8 cut(s)	27, 67, 293, 360, 361, 369, 392, 691
MvaI	CCWGG	2 cut(s)	392, 691
MvnI	CGCG	2 cut(s)	77, 524
MwoI	GCNNNNNNNGC	6 cut(s)	236, 313, 457, 481, 517, 587
NciI	CCSGG	6 cut(s)	27, 67, 293, 360, 361, 369
NlaIII	CATG	4 cut(s)	52, 151, 326, 358
NlaIV	GGNNCC	5 cut(s)	24, 366, 372, 373, 594
NruI	TCGCGA	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	177
PaeR7I	CTCGAG	1 cut(s)	254
PaqCI	CACCTGC	1 cut(s)	427
PasI	CCCWGGG	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	598, 607, 680
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	76, 232, 309, 462
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PpuMI	RGGWCCY	1 cut(s)	371
Psp124BI	GAGCTC	2 cut(s)	522, 654
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	2 cut(s)	390, 689
PspGI	CCWGG	2 cut(s)	390, 689
PspN4I	GGNNCC	5 cut(s)	24, 366, 372, 373, 594
PspPI	GGNCC	3 cut(s)	79, 371, 593
PspPPI	RGGWCCY	1 cut(s)	371
PspXI	VCTCGAGB	1 cut(s)	254
RruI	TCGCGA	1 cut(s)	524
RseI	CAYNNNNRTG	2 cut(s)	177, 321
SacI	GAGCTC	2 cut(s)	522, 654
SacII	CCGCGG	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	491, 642
SatI	GCNGC	4 cut(s)	75, 231, 308, 461
Sau96I	GGNCC	3 cut(s)	79, 371, 593
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	8 cut(s)	27, 67, 293, 360, 361, 369, 392, 691
SduI	GDGCHC	4 cut(s)	184, 453, 522, 654
SfaNI	GCATC	2 cut(s)	114, 189
Sfr274I	CTCGAG	1 cut(s)	254
Sfr303I	CCGCGG	1 cut(s)	78
SgrBI	CCGCGG	1 cut(s)	78
SinI	GGWCC	2 cut(s)	79, 371
SlaI	CTCGAG	1 cut(s)	254
SmaI	CCCGGG	1 cut(s)	361
SmiMI	CAYNNNNRTG	2 cut(s)	177, 321
SmlI	CTYRAG	3 cut(s)	59, 254, 653
SmoI	CTYRAG	3 cut(s)	59, 254, 653
Sse9I	AATT	1 cut(s)	477
SspMI	CTAG	1 cut(s)	495
SstI	GAGCTC	2 cut(s)	522, 654
StyD4I	CCNGG	8 cut(s)	25, 65, 291, 358, 359, 367, 390, 689
TaaI	ACNGT	1 cut(s)	507
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	2 cut(s)	255, 378
TasI	AATT	1 cut(s)	477
TauI	GCSGC	3 cut(s)	77, 310, 463
TfiI	GAWTC	3 cut(s)	598, 607, 680
Tru1I	TTAA	2 cut(s)	491, 642
Tru9I	TTAA	2 cut(s)	491, 642
TscAI	CASTG	1 cut(s)	212
TseI	GCWGC	1 cut(s)	230
TspDTI	ATGAA	3 cut(s)	339, 343, 599
TspGWI	ACGGA	1 cut(s)	639
TspMI	CCCGGG	1 cut(s)	359
TspRI	CASTG	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	79, 371
XhoI	CTCGAG	1 cut(s)	254
XmaI	CCCGGG	1 cut(s)	359
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.