AT1G06280

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014053
Physical Location & Seq
Reverse (-)
1920307 .. 1920949
643 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06280.1

Sequence Viewer

Length: 621 bp
ATGATGCAAAGGAACTCTAACAACACCAGCATCACCAGTAACATCTCCAATAACTCATCGTCGCATCAAGCTTGTGCTTCATGCAAACATCAAAGGAAGAAATGCAACAACGAATGTATCTTATCGCCGTATTTCCCAGCCCGCAAGACTAAAGAGTTTCAGGCCGTGCACAAGGTCTTCGGTGTCAGTAACGTACAAAAAATGGTACGGACGGTACGTGAAGAGGACCGTACCAAGCTCTCTGATTCTTTAACATGGGAAGCTCTATGGAGACAGAAAGATCCGGTCCTTGGCTCCTATGGAGAGTATAGGAGGATTTGTGAAGAGCTCAAGTTATACAAAAGCTTGGTTCATAACCAGCCTCTCATTGGTTGGGATAATAATCAACGCGTATTTAACAATAATAGTAACAACAAGAACGGATTAGCGATGACGAATTCGAGTGGATCAGGAGGGTTTAGTGTTAACAACAATGGTGTTGGTGTGAATCGGGAGATTGTCAACGGTGGATATGCATCAAGGAATGTGCAAGGTGGTTGGGAAAATCTAAAGCACGATCAAAGGCAACAATGTTATGCAGTGATTAATAATGGTTTCAAACAACACTATCTCCCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

206

Amino Acids

23.42

Weight (kDa)

9.61

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 24 - 115 8.5e-32 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06280
fragaria_vesca FvH4_6g26950
malus_domestica MD07G1305100.v1.1
prunus_persica Prupe.3G126300_v2.0.a1 Prupe.3G126300_v2.0.a1
pyrus_communis pycom07g27850
rosa_chinensis RchiOBHm_Chr2g0128781
rosa_laevigata RLG00000019022
rosa_multiflora Rmu_co8412195.1_g000001 Rmu_sc0005514.1_g000018 Rmu_sc0018619.1_g000003
rosa_roxburghii Rroxscaffold_2G00115280
rosa_rugosa Rorug02G0280500
rosa_samantha Rh2BG341700 Rh2CG320600 Rh2DG358400
rosa_wichuraiana Rw2G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 390
AciI CCGC 1 cut(s) 142
AclWI GGATC 2 cut(s) 275, 454
AcsI RAATTY 1 cut(s) 436
AfaI GTAC 4 cut(s) 195, 207, 216, 232
AfiI CCNNNNNNNGG 2 cut(s) 290, 368
AflIII ACRYGT 1 cut(s) 388
AgsI TTSAA 1 cut(s) 598
AluBI AGCT 5 cut(s) 71, 238, 263, 328, 345
AluI AGCT 5 cut(s) 71, 238, 263, 328, 345
Alw21I GWGCWC 2 cut(s) 171, 330
Alw26I GTCTC 1 cut(s) 265
Alw44I GTGCAC 1 cut(s) 167
AlwI GGATC 2 cut(s) 275, 454
AoxI GGCC 1 cut(s) 162
ApaLI GTGCAC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 436
AseI ATTAAT 1 cut(s) 585
AspS9I GGNCC 2 cut(s) 226, 286
AsuHPI GGTGA 1 cut(s) 25
AvaII GGWCC 2 cut(s) 226, 286
BaeGI GKGCMC 1 cut(s) 171
BaeI ACNNNNGTAYC 2 cut(s) 100, 133
BanII GRGCYC 1 cut(s) 330
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 2 cut(s) 171, 330
BceAI ACGGC 2 cut(s) 112, 149
BcoDI GTCTC 1 cut(s) 265
Bme18I GGWCC 2 cut(s) 226, 286
BmgT120I GGNCC 2 cut(s) 226, 286
BmiI GGNNCC 1 cut(s) 295
BmsI GCATC 3 cut(s) 39, 73, 524
BpiI GAAGAC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 314
BsaAI YACGTR 1 cut(s) 218
BsaBI GATNNNNATC 2 cut(s) 381, 514
BsaJI CCNNGG 1 cut(s) 289
BsaWI WCCGGW 1 cut(s) 283
BsaXI ACNNNNNCTCC 3 cut(s) 304, 334, 594
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 368
Bse1I ACTGG 1 cut(s) 36
Bse8I GATNNNNATC 2 cut(s) 381, 514
BseDI CCNNGG 1 cut(s) 289
BseJI GATNNNNATC 2 cut(s) 381, 514
BseLI CCNNNNNNNGG 2 cut(s) 290, 368
BseNI ACTGG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 171
BseYI CCCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 1 cut(s) 164
BsiHKAI GWGCWC 2 cut(s) 171, 330
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 290, 368
BsmAI GTCTC 1 cut(s) 265
BsnI GGCC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 171, 330
Bsp143I GATC 3 cut(s) 280, 446, 556
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 164
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 295
BspPI GGATC 2 cut(s) 275, 454
BspQI GCTCTTC 1 cut(s) 318
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 3 cut(s) 280, 446, 556
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 3 cut(s) 214, 230, 506
Bst6I CTCTTC 2 cut(s) 216, 318
BstBAI YACGTR 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 142
BstFNI CGCG 1 cut(s) 390
BstKTI GATC 3 cut(s) 283, 449, 559
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 3 cut(s) 280, 446, 556
BstSLI GKGCMC 1 cut(s) 171
BstUI CGCG 1 cut(s) 390
BstV2I GAAGAC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 443
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 226, 286
Csp6I GTAC 4 cut(s) 194, 206, 215, 231
CviAII CATG 2 cut(s) 81, 255
CviJI RGCY 9 cut(s) 71, 140, 164, 238, 263, 294, 328, 345, 361
CviKI_1 RGCY 9 cut(s) 71, 140, 164, 238, 263, 294, 328, 345, 361
CviQI GTAC 4 cut(s) 194, 206, 215, 231
DpnI GATC 3 cut(s) 282, 448, 558
DpnII GATC 3 cut(s) 280, 446, 556
Eam1104I CTCTTC 2 cut(s) 216, 318
EarI CTCTTC 2 cut(s) 216, 318
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 2 cut(s) 226, 286
Eco53kI GAGCTC 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 328
EcoRI GAATTC 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 289
EcoT22I ATGCAT 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 84, 258
FaiI YATR 9 cut(s) 82, 256, 268, 300, 309, 337, 354, 513, 576
FatI CATG 2 cut(s) 80, 254
FauI CCCGC 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 330
GsaI CCCAGC 1 cut(s) 140
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 284
Hin1II CATG 2 cut(s) 84, 258
HincII GTYRAC 2 cut(s) 466, 502
HindII GTYRAC 2 cut(s) 466, 502
HindIII AAGCTT 2 cut(s) 69, 343
HinfI GANTC 2 cut(s) 245, 487
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 1 cut(s) 284
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 169, 466, 502
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 450, 491
Hpy8I GTNNAC 3 cut(s) 169, 466, 502
Hpy99I CGWCG 1 cut(s) 64
HpyCH4III ACNGT 3 cut(s) 214, 230, 506
HpyCH4IV ACGT 2 cut(s) 192, 217
HpyCH4V TGCA 7 cut(s) 7, 84, 105, 169, 515, 529, 578
HpySE526I ACGT 2 cut(s) 192, 217
Hsp92II CATG 2 cut(s) 84, 258
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 3 cut(s) 280, 446, 556
LguI GCTCTTC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 7 cut(s) 40, 49, 146, 150, 297, 371, 435
LweI GCATC 3 cut(s) 39, 73, 524
MaeII ACGT 2 cut(s) 192, 217
MaeIII GTNAC 3 cut(s) 38, 188, 407
MalI GATC 3 cut(s) 282, 448, 558
MboI GATC 3 cut(s) 280, 446, 556
MboII GAAGA 4 cut(s) 109, 169, 233, 335
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 171, 330
MluCI AATT 1 cut(s) 436
MluI ACGCGT 1 cut(s) 388
MnlI CCTC 4 cut(s) 217, 306, 372, 446
Mph1103I ATGCAT 1 cut(s) 517
MseI TTAA 4 cut(s) 251, 396, 465, 585
MspI CCGG 1 cut(s) 284
MvnI CGCG 1 cut(s) 390
NdeII GATC 3 cut(s) 280, 446, 556
NlaIII CATG 2 cut(s) 84, 258
NlaIV GGNNCC 1 cut(s) 295
NsiI ATGCAT 1 cut(s) 517
PciSI GCTCTTC 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 214
PfeI GAWTC 2 cut(s) 245, 487
Ppu21I YACGTR 1 cut(s) 218
PshBI ATTAAT 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 330
PspFI CCCAGC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 295
PspPI GGNCC 2 cut(s) 226, 286
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 4 cut(s) 195, 207, 216, 232
RsaNI GTAC 4 cut(s) 194, 206, 215, 231
SacI GAGCTC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 318
SaqAI TTAA 4 cut(s) 251, 396, 465, 585
Sau3AI GATC 3 cut(s) 280, 446, 556
Sau96I GGNCC 2 cut(s) 226, 286
SduI GDGCHC 2 cut(s) 171, 330
SetI ASST 9 cut(s) 73, 177, 195, 220, 240, 265, 330, 347, 535
SfaNI GCATC 3 cut(s) 39, 73, 524
SinI GGWCC 2 cut(s) 226, 286
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 1 cut(s) 436
SsiI CCGC 1 cut(s) 142
SstI GAGCTC 1 cut(s) 330
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 214, 230, 506
TaiI ACGT 2 cut(s) 195, 220
TaqI TCGA 1 cut(s) 440
TasI AATT 1 cut(s) 436
TfiI GAWTC 2 cut(s) 245, 487
Tru1I TTAA 4 cut(s) 251, 396, 465, 585
Tru9I TTAA 4 cut(s) 251, 396, 465, 585
TscAI CASTG 1 cut(s) 585
TspDTI ATGAA 2 cut(s) 69, 341
TspGWI ACGGA 2 cut(s) 223, 435
TspRI CASTG 1 cut(s) 585
VneI GTGCAC 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 226, 286
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 1 cut(s) 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 365
Zsp2I ATGCAT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.