Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014053

Physical Location & Seq

Genomic Coordinates Reverse (-)

30257013 .. 30258411

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0280500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGCATCCAAAACTGTCAGAGGACGAGATAAAGGGGAAATTGATCACATGGTTGACTCCTCACCCTTTGCAGCAAGTTTTGACTGATGATATTGACTTTAATATCATGCTAAACTTTTTGGAGTTTTATGAGGCTCTTCTTGCTTTTGTGAAATGTCATTTATATCATTCCATAGATGTTCCACTTCTTCGATCTGTTGGTCGTCCTCCCAATATCATATCCAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

76

Amino Acids

8.83

Weight (kDa)

5.67

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pescadillo_N	PF06732	9 - 60	1.1e-17	Pescadillo N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06280
fragaria_vesca	FvH4_6g26950
malus_domestica	MD07G1305100.v1.1
prunus_persica	Prupe.3G126300_v2.0.a1 Prupe.3G126300_v2.0.a1
pyrus_communis	pycom07g27850
rosa_chinensis	RchiOBHm_Chr2g0128781
rosa_laevigata	RLG00000019022
rosa_multiflora	Rmu_co8412195.1_g000001 Rmu_sc0005514.1_g000018 Rmu_sc0018619.1_g000003
rosa_roxburghii	Rroxscaffold_2G00115280
rosa_rugosa	Rorug02G0280500
rosa_samantha	Rh2BG341700 Rh2CG320600 Rh2DG358400
rosa_wichuraiana	Rw2G026970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
ApeKI	GCWGC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	82
BclI	TGATCA	1 cut(s)	42
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	13
BseGI	GGATG	1 cut(s)	4
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	42, 191
BspQI	GCTCTTC	1 cut(s)	141
BssMI	GATC	2 cut(s)	42, 191
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	4
BstKTI	GATC	2 cut(s)	45, 194
BstMBI	GATC	2 cut(s)	42, 191
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	4
CviAII	CATG	2 cut(s)	48, 106
CviJI	RGCY	1 cut(s)	134
CviKI_1	RGCY	1 cut(s)	134
DpnI	GATC	2 cut(s)	44, 193
DpnII	GATC	2 cut(s)	42, 191
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	51, 109
FaiI	YATR	6 cut(s)	49, 107, 129, 163, 173, 218
FatI	CATG	2 cut(s)	47, 105
FbaI	TGATCA	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	51, 109
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	4, 70
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	51, 109
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	42, 191
LguI	GCTCTTC	1 cut(s)	141
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	13
MalI	GATC	2 cut(s)	44, 193
MboI	GATC	2 cut(s)	42, 191
MboII	GAAGA	2 cut(s)	128, 179
MluCI	AATT	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	4 cut(s)	13, 69, 124, 216
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	2 cut(s)	42, 191
NlaIII	CATG	2 cut(s)	51, 109
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	72
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	2 cut(s)	42, 191
SchI	GAGTC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	13
SgeI	CNNG	5 cut(s)	37, 60, 86, 118, 152
Sse9I	AATT	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	190
TasI	AATT	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.