RLG00000019022

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014053
Physical Location & Seq
Forward (+)
44927129 .. 44928056
928 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019022

Sequence Viewer

Length: 720 bp
ATGCACAGGAAGAGTAATGGCACACCAGGAGCAGTACCAGCATGTGCAGCATGCAAGCATCAAAGGAAAAAGTGCAACGAAGGTTGCACTTTGGCACCCTTTTTTCCAGTGGAGAGGAATCGAGAATTCCAAGCCGTGCACAAAGTTTTCGGGGTTAGCAATGTAACAAAGATGGTGAAGAATGCCAATGAAGCGAACCGGAGAAAGGTTGTTGATTCATTGGTATGGGAAGCTCTTTCCAGGCAAAAAGACCCGGTGCTTGGTCCTTACGGAGAGTATAGGATGATTTTTGATGAGCTCAAGATGTATAAAAATCAAGCGAACCAAACGGTTCCTTTACAAGTGCAAAAGGGCATGTGTTACAAATCTCTGACGGATTTAGTTGCTTGGAACTATGAAACTAATGGGATTAGCAATGGAATAAATGGAGGAAATGGAATCACTACTACTAATAACAATTTGGATTATGATCTTCAGGTTAACGAAAACGGCAGAATAGATTCAGTCCCGCCATATGGTTATCCTTTAACTTGTGAGCAAGAAATTGCAGCAGAGAAGATAAAGCAAGTAAAAATAGCTGCTGATTCCATTGTTGTTCCAGTAGTACACCAGCAGGGGCATTCTATCAACAACATTAATCAGCAGTACTATATTTCAGGTCAACTTAATCAACTCATTGGCAACCCATTAGAAAGGACAATATGGGAAGGTGGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

240

Amino Acids

26.67

Weight (kDa)

8.66

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 14 - 109 3.5e-32 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06280
fragaria_vesca FvH4_6g26950
malus_domestica MD07G1305100.v1.1
prunus_persica Prupe.3G126300_v2.0.a1 Prupe.3G126300_v2.0.a1
pyrus_communis pycom07g27850
rosa_chinensis RchiOBHm_Chr2g0128781
rosa_laevigata RLG00000019022
rosa_multiflora Rmu_co8412195.1_g000001 Rmu_sc0005514.1_g000018 Rmu_sc0018619.1_g000003
rosa_roxburghii Rroxscaffold_2G00115280
rosa_rugosa Rorug02G0280500
rosa_samantha Rh2BG341700 Rh2CG320600 Rh2DG358400
rosa_wichuraiana Rw2G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AciI CCGC 1 cut(s) 509
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 3 cut(s) 36, 606, 647
AfiI CCNNNNNNNGG 3 cut(s) 205, 260, 515
AjnI CCWGG 2 cut(s) 25, 239
AluBI AGCT 3 cut(s) 233, 298, 578
AluI AGCT 3 cut(s) 233, 298, 578
Alw21I GWGCWC 2 cut(s) 141, 300
Alw44I GTGCAC 1 cut(s) 137
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 3 cut(s) 47, 548, 578
ApoI RAATTY 1 cut(s) 125
AseI ATTAAT 1 cut(s) 636
Asp700I GAANNNNTTC 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 2 cut(s) 141, 300
BbvI GCAGC 3 cut(s) 59, 560, 565
BccI CCATC 1 cut(s) 166
BceAI ACGGC 2 cut(s) 119, 505
BciT130I CCWGG 2 cut(s) 27, 241
BcnI CCSGG 1 cut(s) 254
BisI GCNGC 3 cut(s) 48, 549, 579
BlsI GCNGC 3 cut(s) 49, 550, 580
BmcAI AGTACT 1 cut(s) 647
Bme1390I CCNGG 3 cut(s) 27, 241, 254
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 96, 333
BmrFI CCNGG 3 cut(s) 27, 241, 254
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 468
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 260, 515
Bse1I ACTGG 2 cut(s) 107, 599
Bse3DI GCAATG 2 cut(s) 166, 421
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 2 cut(s) 27, 241
BseGI GGATG 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 3 cut(s) 205, 260, 515
BseMI GCAATG 2 cut(s) 166, 421
BseNI ACTGG 2 cut(s) 107, 599
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 3 cut(s) 59, 560, 565
BsgI GTGCAG 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 94
BsiHKAI GWGCWC 2 cut(s) 141, 300
BsiSI CCGG 2 cut(s) 199, 254
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 3 cut(s) 205, 260, 515
BsmFI GGGAC 1 cut(s) 491
BsmI GAATGC 2 cut(s) 187, 619
Bsp1286I GDGCHC 2 cut(s) 141, 300
Bsp143I GATC 2 cut(s) 469, 713
BspACI CCGC 1 cut(s) 509
BspLI GGNNCC 2 cut(s) 96, 333
BspT107I GGYRCC 1 cut(s) 94
BsrDI GCAATG 2 cut(s) 166, 421
BsrI ACTGG 2 cut(s) 107, 599
BssMI GATC 2 cut(s) 469, 713
Bst2UI CCWGG 2 cut(s) 27, 241
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 52, 56
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 2 cut(s) 472, 716
BstMBI GATC 2 cut(s) 469, 713
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 191
BstNI CCWGG 2 cut(s) 27, 241
BstNSI RCATGY 3 cut(s) 45, 54, 358
BstSCI CCNGG 3 cut(s) 25, 239, 252
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 3 cut(s) 59, 560, 565
BtsCI GGATG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 52, 56
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 3 cut(s) 35, 605, 646
CviAII CATG 3 cut(s) 42, 51, 355
CviJI RGCY 4 cut(s) 134, 233, 298, 578
CviKI_1 RGCY 4 cut(s) 134, 233, 298, 578
CviQI GTAC 3 cut(s) 35, 605, 646
DpnI GATC 2 cut(s) 471, 715
DpnII GATC 2 cut(s) 469, 713
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Ecl136II GAGCTC 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 25, 239
EcoT38I GRGCYC 1 cut(s) 300
FaeI CATG 3 cut(s) 45, 54, 358
FaqI GGGAC 1 cut(s) 491
FatI CATG 3 cut(s) 41, 50, 354
FauI CCCGC 1 cut(s) 516
FauNDI CATATG 1 cut(s) 514
Fnu4HI GCNGC 3 cut(s) 48, 549, 579
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 3 cut(s) 48, 549, 579
GluI GCNGC 3 cut(s) 48, 549, 579
HapII CCGG 2 cut(s) 199, 254
Hin1II CATG 3 cut(s) 45, 54, 358
HincII GTYRAC 2 cut(s) 481, 662
HindII GTYRAC 2 cut(s) 481, 662
HinfI GANTC 5 cut(s) 118, 215, 438, 500, 584
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 2 cut(s) 199, 254
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 4 cut(s) 139, 481, 607, 662
Hpy188I TCNGA 1 cut(s) 372
Hpy188III TCNNGA 2 cut(s) 122, 301
Hpy8I GTNNAC 4 cut(s) 139, 481, 607, 662
HpyAV CCTTC 2 cut(s) 74, 701
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 8 cut(s) 4, 47, 54, 75, 87, 139, 346, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 191
Hsp92II CATG 3 cut(s) 45, 54, 358
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 2 cut(s) 469, 713
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 3 cut(s) 59, 560, 565
LweI GCATC 1 cut(s) 67
MaeIII GTNAC 2 cut(s) 163, 359
MalI GATC 2 cut(s) 471, 715
MboI GATC 2 cut(s) 469, 713
MboII GAAGA 4 cut(s) 22, 190, 464, 568
MhlI GDGCHC 2 cut(s) 141, 300
MluCI AATT 3 cut(s) 125, 457, 543
MnlI CCTC 2 cut(s) 108, 422
MroXI GAANNNNTTC 1 cut(s) 499
MseI TTAA 4 cut(s) 480, 527, 636, 666
MslI CAYNNNNRTG 1 cut(s) 223
MspI CCGG 2 cut(s) 199, 254
MspR9I CCNGG 3 cut(s) 27, 241, 254
Mva1269I GAATGC 2 cut(s) 187, 619
MvaI CCWGG 2 cut(s) 27, 241
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 191
NciI CCSGG 1 cut(s) 254
NdeI CATATG 1 cut(s) 514
NdeII GATC 2 cut(s) 469, 713
NlaIII CATG 3 cut(s) 45, 54, 358
NlaIV GGNNCC 2 cut(s) 96, 333
NspI RCATGY 3 cut(s) 45, 54, 358
PaeI GCATGC 1 cut(s) 54
PctI GAATGC 2 cut(s) 187, 619
PdmI GAANNNNTTC 1 cut(s) 499
PfeI GAWTC 5 cut(s) 118, 215, 438, 500, 584
PkrI GCNGC 3 cut(s) 49, 550, 580
PshBI ATTAAT 1 cut(s) 636
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 25, 239
PspGI CCWGG 2 cut(s) 25, 239
PspN4I GGNNCC 2 cut(s) 96, 333
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 3 cut(s) 36, 606, 647
RsaNI GTAC 3 cut(s) 35, 605, 646
RseI CAYNNNNRTG 1 cut(s) 223
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 4 cut(s) 480, 527, 636, 666
SatI GCNGC 3 cut(s) 48, 549, 579
Sau3AI GATC 2 cut(s) 469, 713
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 647
ScrFI CCNGG 3 cut(s) 27, 241, 254
SduI GDGCHC 2 cut(s) 141, 300
SetI ASST 8 cut(s) 85, 210, 235, 300, 480, 580, 661, 712
SfaNI GCATC 1 cut(s) 67
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 223
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 54
Sse9I AATT 3 cut(s) 125, 457, 543
SsiI CCGC 1 cut(s) 509
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 3 cut(s) 25, 239, 252
TaaI ACNGT 1 cut(s) 331
TaqI TCGA 1 cut(s) 121
TasI AATT 3 cut(s) 125, 457, 543
TatI WGTACW 2 cut(s) 604, 645
TfiI GAWTC 5 cut(s) 118, 215, 438, 500, 584
Tru1I TTAA 4 cut(s) 480, 527, 636, 666
Tru9I TTAA 4 cut(s) 480, 527, 636, 666
TscAI CASTG 1 cut(s) 114
TseI GCWGC 3 cut(s) 47, 548, 578
TspDTI ATGAA 3 cut(s) 204, 207, 411
TspGWI ACGGA 2 cut(s) 285, 389
TspRI CASTG 1 cut(s) 114
VneI GTGCAC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 263
VspI ATTAAT 1 cut(s) 636
XapI RAATTY 1 cut(s) 125
XceI RCATGY 3 cut(s) 45, 54, 358
XmnI GAANNNNTTC 1 cut(s) 499
ZrmI AGTACT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.