Rroxscaffold_2G00115280

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014053
Physical Location & Seq
Reverse (-)
41503342 .. 41506305
2964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115280.1

Sequence Viewer

Length: 834 bp
ATGGCACACCAGGAGCACTACCAGCATGTGCAGCATGCAAGCATCAGCGAAAAGTGCAACGAAGGTTGCACTTGGGCACCTTTTTTCCAGCGGAGAGGAATCCTCGAGAAGGGTCTCAAGCAGTGCACAAAGTTTTCGGGGTTAGCAATTGCAAAGGGCATGTGTTACAAATCTCTGACGGATTTAGTTGCTTGGAACTATGAAACTAATGGGATTAGCGATGGAATAAATGGAGGAAATGGAATCACTACTACTAATAACAATTTGGATTATGATCTTCAGGTTAACGAAAACGTCAGTATCAATTCAGTCCCGCCATATGGTTATCCTTTAACTTGTGAGCAAGAAATTGCAGCAGAGAAGATAAAGCAAGTAAAAATAGCTGCTGATTCCATTGTTGTTCCAGTAGTACACCAGCAGGGCATTCTATCAACAACATTAATCAGCAGTACTATATTTCAGAGAGATCTGGCGGATTTCGAAGCTGGGAGCCTGGAATTCAGCACCTTGTTTGCGTTCGGGGATTCAATGGCTAAGTGTCATCTCAAGCCTCATGTATTGGGAGGGTTACCGCTGATCATTTGCTGGAGCGCAATGGATGTGATCATGCTACTCCTCACACGCTCTGCTAGGGTTGGGAGAGCGCCGTTCGTGGCCTCTCTGTACCTTTCTCAATCATCGATGGAGTACCTTTCGGCACCGATCTCGGCTTCGTTGTTTGTGCGCACGGTTCATACCGTGTTCCCCGATCGTCCGTGGCTTGCATTCTTGCCAGCGACGTCTTCGTGTTCTTTTCATGGTGGTTCTTGTCCGGGTGGAGAAGAGGATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

277

Amino Acids

30.19

Weight (kDa)

5.82

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06280
fragaria_vesca FvH4_6g26950
malus_domestica MD07G1305100.v1.1
prunus_persica Prupe.3G126300_v2.0.a1 Prupe.3G126300_v2.0.a1
pyrus_communis pycom07g27850
rosa_chinensis RchiOBHm_Chr2g0128781
rosa_laevigata RLG00000019022
rosa_multiflora Rmu_co8412195.1_g000001 Rmu_sc0005514.1_g000018 Rmu_sc0018619.1_g000003
rosa_roxburghii Rroxscaffold_2G00115280
rosa_rugosa Rorug02G0280500
rosa_samantha Rh2BG341700 Rh2CG320600 Rh2DG358400
rosa_wichuraiana Rw2G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 782
Acc16I TGCGCA 1 cut(s) 725
AccB1I GGYRCC 2 cut(s) 76, 697
AciI CCGC 4 cut(s) 91, 314, 473, 572
AcsI RAATTY 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 263
AcyI GRCGYC 1 cut(s) 779
AfaI GTAC 4 cut(s) 411, 451, 665, 689
AfiI CCNNNNNNNGG 2 cut(s) 109, 320
AgsI TTSAA 1 cut(s) 528
AjnI CCWGG 2 cut(s) 9, 492
AluBI AGCT 2 cut(s) 383, 485
AluI AGCT 2 cut(s) 383, 485
Alw21I GWGCWC 2 cut(s) 18, 128
Alw26I GTCTC 1 cut(s) 119
Alw44I GTGCAC 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 1 cut(s) 654
ApaLI GTGCAC 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 31, 353, 383
ApoI RAATTY 1 cut(s) 497
AseI ATTAAT 1 cut(s) 440
AspLEI GCGC 3 cut(s) 593, 646, 726
AsuC2I CCSGG 1 cut(s) 813
AsuII TTCGAA 1 cut(s) 480
AvaI CYCGRG 1 cut(s) 104
BaeGI GKGCMC 2 cut(s) 79, 128
BaeI ACNNNNGTAYC 2 cut(s) 283, 316
BanI GGYRCC 2 cut(s) 76, 697
BbsI GAAGAC 1 cut(s) 774
Bbv12I GWGCWC 2 cut(s) 18, 128
BbvI GCAGC 3 cut(s) 43, 365, 370
BccI CCATC 2 cut(s) 215, 676
BceAI ACGGC 1 cut(s) 631
BcgI CGANNNNNNTGC 2 cut(s) 687, 721
BciT130I CCWGG 2 cut(s) 11, 494
BclI TGATCA 2 cut(s) 576, 603
BcnI CCSGG 1 cut(s) 813
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 630
BfoI RGCGCY 1 cut(s) 647
BglII AGATCT 1 cut(s) 466
BisI GCNGC 3 cut(s) 32, 354, 384
BlsI GCNGC 3 cut(s) 33, 355, 385
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 3 cut(s) 11, 494, 813
BmeT110I CYCGRG 1 cut(s) 104
BmiI GGNNCC 3 cut(s) 78, 491, 699
BmrFI CCNGG 3 cut(s) 11, 494, 813
BmsI GCATC 2 cut(s) 51, 817
BpiI GAAGAC 1 cut(s) 774
BplI GAGNNNNNCTC 2 cut(s) 87, 119
BpmI CTGGAG 1 cut(s) 607
Bpu14I TTCGAA 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 101, 530
BpuMI CCSGG 1 cut(s) 813
Bsa29I ATCGAT 1 cut(s) 680
BsaBI GATNNNNATC 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 755
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 320
Bse1I ACTGG 1 cut(s) 404
Bse3DI GCAATG 1 cut(s) 600
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 2 cut(s) 11, 494
BseCI ATCGAT 1 cut(s) 680
BseDI CCNNGG 1 cut(s) 755
BseGI GGATG 2 cut(s) 604, 832
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 109, 320
BseMI GCAATG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 404
BseRI GAGGAG 1 cut(s) 605
BseSI GKGCMC 2 cut(s) 79, 128
BseXI GCAGC 3 cut(s) 43, 365, 370
BseYI CCCAGC 1 cut(s) 485
BsgI GTGCAG 1 cut(s) 50
Bsh1285I CGRYCG 1 cut(s) 751
BshFI GGCC 1 cut(s) 656
BshNI GGYRCC 2 cut(s) 76, 697
BshVI ATCGAT 1 cut(s) 680
BsiEI CGRYCG 1 cut(s) 751
BsiHKAI GWGCWC 2 cut(s) 18, 128
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 812
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 109, 320
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 296
BsmI GAATGC 2 cut(s) 423, 764
BsnI GGCC 1 cut(s) 656
Bso31I GGTCTC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 104
Bsp119I TTCGAA 1 cut(s) 480
Bsp1286I GDGCHC 3 cut(s) 18, 79, 128
Bsp143I GATC 6 cut(s) 274, 466, 576, 603, 702, 748
BspACI CCGC 4 cut(s) 91, 314, 473, 572
BspANI GGCC 1 cut(s) 656
BspDI ATCGAT 1 cut(s) 680
BspLI GGNNCC 3 cut(s) 78, 491, 699
BspT104I TTCGAA 1 cut(s) 480
BspT107I GGYRCC 2 cut(s) 76, 697
BspTNI GGTCTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 600
BsrI ACTGG 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 755
BssMI GATC 6 cut(s) 274, 466, 576, 603, 702, 748
BssNI GRCGYC 1 cut(s) 779
Bst2UI CCWGG 2 cut(s) 11, 494
Bst4CI ACNGT 2 cut(s) 730, 739
Bst6I CTCTTC 1 cut(s) 816
BstACI GRCGYC 1 cut(s) 779
BstBI TTCGAA 1 cut(s) 480
BstC8I GCNNGC 4 cut(s) 36, 40, 762, 774
BstDEI CTNAG 1 cut(s) 534
BstDSI CCRYGG 1 cut(s) 755
BstEII GGTNACC 1 cut(s) 567
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 604, 832
BstH2I RGCGCY 1 cut(s) 647
BstHHI GCGC 3 cut(s) 593, 646, 726
BstKTI GATC 6 cut(s) 277, 469, 579, 606, 705, 751
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 6 cut(s) 274, 466, 576, 603, 702, 748
BstMCI CGRYCG 1 cut(s) 751
BstMWI GCNNNNNNNGC 3 cut(s) 22, 31, 54
BstNI CCWGG 2 cut(s) 11, 494
BstNSI RCATGY 3 cut(s) 29, 38, 163
BstPI GGTNACC 1 cut(s) 567
BstSCI CCNGG 3 cut(s) 9, 492, 811
BstSLI GKGCMC 2 cut(s) 79, 128
BstV1I GCAGC 3 cut(s) 43, 365, 370
BstV2I GAAGAC 1 cut(s) 774
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
Bsu15I ATCGAT 1 cut(s) 680
BsuRI GGCC 1 cut(s) 656
BsuTUI ATCGAT 1 cut(s) 680
BtgI CCRYGG 1 cut(s) 755
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 2 cut(s) 604, 832
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 4 cut(s) 36, 40, 762, 774
CfoI GCGC 3 cut(s) 593, 646, 726
ClaI ATCGAT 1 cut(s) 680
Csp6I GTAC 4 cut(s) 410, 450, 664, 688
CviAII CATG 6 cut(s) 26, 35, 160, 554, 607, 797
CviJI RGCY 8 cut(s) 383, 485, 492, 533, 550, 656, 710, 760
CviKI_1 RGCY 8 cut(s) 383, 485, 492, 533, 550, 656, 710, 760
CviQI GTAC 4 cut(s) 410, 450, 664, 688
DdeI CTNAG 1 cut(s) 534
DpnI GATC 6 cut(s) 276, 468, 578, 605, 704, 750
DpnII GATC 6 cut(s) 274, 466, 576, 603, 702, 748
Eam1104I CTCTTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 816
EciI GGCGGA 1 cut(s) 488
Eco31I GGTCTC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 104
Eco91I GGTNACC 1 cut(s) 567
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 567
EcoRI GAATTC 1 cut(s) 497
EcoRII CCWGG 2 cut(s) 9, 492
FaeI CATG 6 cut(s) 29, 38, 163, 557, 610, 800
FaqI GGGAC 1 cut(s) 296
FatI CATG 6 cut(s) 25, 34, 159, 553, 606, 796
FauI CCCGC 1 cut(s) 321
FauNDI CATATG 1 cut(s) 319
FbaI TGATCA 2 cut(s) 576, 603
Fnu4HI GCNGC 3 cut(s) 32, 354, 384
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 3 cut(s) 32, 354, 384
FspAI RTGCGCAY 1 cut(s) 725
FspBI CTAG 1 cut(s) 630
FspI TGCGCA 1 cut(s) 725
GlaI GCGC 3 cut(s) 592, 645, 725
GluI GCNGC 3 cut(s) 32, 354, 384
GsaI CCCAGC 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 607
HaeII RGCGCY 1 cut(s) 647
HaeIII GGCC 1 cut(s) 656
HapII CCGG 1 cut(s) 812
HhaI GCGC 3 cut(s) 593, 646, 726
Hin1I GRCGYC 1 cut(s) 779
Hin1II CATG 6 cut(s) 29, 38, 163, 557, 610, 800
Hin6I GCGC 3 cut(s) 591, 644, 724
HinP1I GCGC 3 cut(s) 591, 644, 724
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 4 cut(s) 99, 243, 389, 524
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 1 cut(s) 812
Hpy166II GTNNAC 3 cut(s) 126, 286, 412
Hpy188I TCNGA 2 cut(s) 177, 462
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 3 cut(s) 126, 286, 412
Hpy99I CGWCG 1 cut(s) 781
HpyAV CCTTC 2 cut(s) 56, 103
HpyCH4III ACNGT 2 cut(s) 730, 739
HpyCH4IV ACGT 2 cut(s) 294, 779
HpyCH4V TGCA 8 cut(s) 31, 38, 57, 69, 126, 152, 353, 764
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 31, 54
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 2 cut(s) 294, 779
Hsp92I GRCGYC 1 cut(s) 779
Hsp92II CATG 6 cut(s) 29, 38, 163, 557, 610, 800
HspAI GCGC 3 cut(s) 591, 644, 724
Ksp22I TGATCA 2 cut(s) 576, 603
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 6 cut(s) 274, 466, 576, 603, 702, 748
LmnI GCTCC 3 cut(s) 13, 489, 588
Lsp1109I GCAGC 3 cut(s) 43, 365, 370
LweI GCATC 2 cut(s) 51, 817
MaeI CTAG 1 cut(s) 630
MaeII ACGT 2 cut(s) 294, 779
MaeIII GTNAC 2 cut(s) 164, 567
MalI GATC 6 cut(s) 276, 468, 578, 605, 704, 750
MboI GATC 6 cut(s) 274, 466, 576, 603, 702, 748
MboII GAAGA 4 cut(s) 269, 373, 774, 833
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 3 cut(s) 18, 79, 128
MluCI AATT 5 cut(s) 147, 262, 304, 348, 497
MnlI CCTC 8 cut(s) 89, 113, 227, 557, 561, 626, 667, 817
MseI TTAA 3 cut(s) 285, 332, 440
MspA1I CMGCKG 2 cut(s) 91, 574
MspI CCGG 1 cut(s) 812
MspR9I CCNGG 3 cut(s) 11, 494, 813
MunI CAATTG 1 cut(s) 147
Mva1269I GAATGC 2 cut(s) 423, 764
MvaI CCWGG 2 cut(s) 11, 494
MwoI GCNNNNNNNGC 3 cut(s) 22, 31, 54
NciI CCSGG 1 cut(s) 813
NdeI CATATG 1 cut(s) 319
NdeII GATC 6 cut(s) 274, 466, 576, 603, 702, 748
NlaIII CATG 6 cut(s) 29, 38, 163, 557, 610, 800
NlaIV GGNNCC 3 cut(s) 78, 491, 699
NmeAIII GCCGAG 1 cut(s) 686
NsbI TGCGCA 1 cut(s) 725
NspI RCATGY 3 cut(s) 29, 38, 163
NspV TTCGAA 1 cut(s) 480
PaeI GCATGC 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 104
PctI GAATGC 2 cut(s) 423, 764
PfeI GAWTC 4 cut(s) 99, 243, 389, 524
PkrI GCNGC 3 cut(s) 33, 355, 385
Ple19I CGATCG 1 cut(s) 751
PshBI ATTAAT 1 cut(s) 440
Psp6I CCWGG 2 cut(s) 9, 492
PspEI GGTNACC 1 cut(s) 567
PspFI CCCAGC 1 cut(s) 485
PspGI CCWGG 2 cut(s) 9, 492
PspN4I GGNNCC 3 cut(s) 78, 491, 699
PsuI RGATCY 1 cut(s) 466
PvuI CGATCG 1 cut(s) 751
RsaI GTAC 4 cut(s) 411, 451, 665, 689
RsaNI GTAC 4 cut(s) 410, 450, 664, 688
SaqAI TTAA 3 cut(s) 285, 332, 440
SatI GCNGC 3 cut(s) 32, 354, 384
Sau3AI GATC 6 cut(s) 274, 466, 576, 603, 702, 748
ScaI AGTACT 1 cut(s) 451
ScrFI CCNGG 3 cut(s) 11, 494, 813
SduI GDGCHC 3 cut(s) 18, 79, 128
SfaNI GCATC 2 cut(s) 51, 817
Sfr274I CTCGAG 1 cut(s) 104
SfuI TTCGAA 1 cut(s) 480
SlaI CTCGAG 1 cut(s) 104
SmlI CTYRAG 3 cut(s) 104, 116, 545
SmoI CTYRAG 3 cut(s) 104, 116, 545
SphI GCATGC 1 cut(s) 38
Sse9I AATT 5 cut(s) 147, 262, 304, 348, 497
SsiI CCGC 4 cut(s) 91, 314, 473, 572
SspMI CTAG 1 cut(s) 630
StyD4I CCNGG 3 cut(s) 9, 492, 811
TaaI ACNGT 2 cut(s) 730, 739
TaiI ACGT 2 cut(s) 297, 782
TaqI TCGA 3 cut(s) 105, 480, 680
TasI AATT 5 cut(s) 147, 262, 304, 348, 497
TatI WGTACW 2 cut(s) 409, 449
TfiI GAWTC 4 cut(s) 99, 243, 389, 524
Tru1I TTAA 3 cut(s) 285, 332, 440
Tru9I TTAA 3 cut(s) 285, 332, 440
TscAI CASTG 1 cut(s) 128
TseI GCWGC 3 cut(s) 31, 353, 383
TspDTI ATGAA 3 cut(s) 216, 722, 785
TspGWI ACGGA 2 cut(s) 194, 744
TspRI CASTG 1 cut(s) 128
VneI GTGCAC 1 cut(s) 124
VspI ATTAAT 1 cut(s) 440
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 497
XceI RCATGY 3 cut(s) 29, 38, 163
XhoI CTCGAG 1 cut(s) 104
XspI CTAG 1 cut(s) 630
ZraI GACGTC 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.