MD07G1305100.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014053
Physical Location & Seq
Forward (+)
36214944 .. 36215594
651 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1305100.v1.1.491

Sequence Viewer

Length: 651 bp
ATGCAGAGGACGAATAACAATGGCACAGCAGGATCAACACAACCAGCATGTGCAGCATGTAAACATCAAAGGAAAAAGTGTCATGCTGGTTGCATATTGGCACCGTATTTTCCTGCAGATAGAACTCGGGAATTCCTCGCCGTGCACAAAGTTTTCGGGGTCAGCAACGTAACAAAGATGGTGAAGAATGTCGAGGAACCCAATCGGAGAAAGGTCGCTGAATCGTTGGTATGGGAAGCTCTTTGTAGGCAAAAAGATCCAGTGCTCGGTGCGTATGGAGAGTATAGGATGGTTTCTGATGAGCTTAAAAGGTATAAGCAGCAGCAGAATCGTGAAAACCATATTGTTCCTTTACAAATGCAAAAGGGATTGTGTTTCAACAAATCCTTGTCGGATTTGGTGGGTAATTGGAATGGTGGAATCACTAATGTTAATAATTCGGGTTATCTTCGTGATAACGACGATGTTATACCGGATTCAGCCCCGTTTGGTTACCCTTTAAATTGTGAACAGCAGAGTCATGAGAAGGTGGTAAAGCAAGTAAAAATGATAGATTCTGTTGTTGTTCCACTACACCAGCAACAACAGCATTATTCTGTCAACAATATCAATCAACAGTATTATCTTACAGGTAAAATTTGTTGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

217

Amino Acids

24.51

Weight (kDa)

9.02

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 16 - 111 4.1e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06280
fragaria_vesca FvH4_6g26950
malus_domestica MD07G1305100.v1.1
prunus_persica Prupe.3G126300_v2.0.a1 Prupe.3G126300_v2.0.a1
pyrus_communis pycom07g27850
rosa_chinensis RchiOBHm_Chr2g0128781
rosa_laevigata RLG00000019022
rosa_multiflora Rmu_co8412195.1_g000001 Rmu_sc0005514.1_g000018 Rmu_sc0018619.1_g000003
rosa_roxburghii Rroxscaffold_2G00115280
rosa_rugosa Rorug02G0280500
rosa_samantha Rh2BG341700 Rh2CG320600 Rh2DG358400
rosa_wichuraiana Rw2G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 649
AccB1I GGYRCC 1 cut(s) 100
AclWI GGATC 2 cut(s) 40, 251
AcsI RAATTY 2 cut(s) 131, 636
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 2 cut(s) 239, 304
AluI AGCT 2 cut(s) 239, 304
Alw21I GWGCWC 2 cut(s) 147, 267
Alw44I GTGCAC 1 cut(s) 143
AlwI GGATC 2 cut(s) 40, 251
Ama87I CYCGRG 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 143
ApeKI GCWGC 3 cut(s) 53, 319, 322
ApoI RAATTY 2 cut(s) 131, 636
AsuHPI GGTGA 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 126
BaeGI GKGCMC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 100
Bbv12I GWGCWC 2 cut(s) 147, 267
BbvI GCAGC 3 cut(s) 65, 331, 334
BccI CCATC 2 cut(s) 172, 283
BceAI ACGGC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 3 cut(s) 54, 320, 323
BlsI GCNGC 3 cut(s) 55, 321, 324
BmeT110I CYCGRG 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 102, 198
BsaWI WCCGGW 1 cut(s) 472
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 3 cut(s) 65, 331, 334
BsgI GTGCAG 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 100
BsiHKAI GWGCWC 2 cut(s) 147, 267
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 473
BslI CCNNNNNNNGG 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 147, 267
Bsp143I GATC 2 cut(s) 32, 256
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 102, 198
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 2 cut(s) 40, 251
BspT107I GGYRCC 1 cut(s) 100
BsrI ACTGG 1 cut(s) 260
BssMI GATC 2 cut(s) 32, 256
Bst4CI ACNGT 2 cut(s) 105, 618
BstEII GGTNACC 1 cut(s) 491
BstF5I GGATG 1 cut(s) 294
BstKTI GATC 2 cut(s) 35, 259
BstMBI GATC 2 cut(s) 32, 256
BstMWI GCNNNNNNNGC 2 cut(s) 53, 586
BstNSI RCATGY 2 cut(s) 51, 60
BstPI GGTNACC 1 cut(s) 491
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 65, 331, 334
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BtsCI GGATG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 267
CciI TCATGA 1 cut(s) 520
CviAII CATG 4 cut(s) 48, 57, 83, 521
CviJI RGCY 3 cut(s) 239, 304, 482
CviKI_1 RGCY 3 cut(s) 239, 304, 482
DpnI GATC 2 cut(s) 34, 258
DpnII GATC 2 cut(s) 32, 256
DraI TTTAAA 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 126
Eco91I GGTNACC 1 cut(s) 491
EcoO65I GGTNACC 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 131
FaeI CATG 4 cut(s) 51, 60, 86, 524
FatI CATG 4 cut(s) 47, 56, 82, 520
Fnu4HI GCNGC 3 cut(s) 54, 320, 323
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 3 cut(s) 54, 320, 323
GluI GCNGC 3 cut(s) 54, 320, 323
HapII CCGG 1 cut(s) 473
Hin1II CATG 4 cut(s) 51, 60, 86, 524
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 6 cut(s) 221, 328, 420, 476, 517, 554
HpaII CCGG 1 cut(s) 473
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 4 cut(s) 62, 145, 509, 601
Hpy188I TCNGA 3 cut(s) 207, 298, 394
Hpy188III TCNNGA 4 cut(s) 128, 332, 452, 521
Hpy8I GTNNAC 4 cut(s) 62, 145, 509, 601
Hpy99I CGWCG 1 cut(s) 464
HpyAV CCTTC 1 cut(s) 520
HpyCH4III ACNGT 2 cut(s) 105, 618
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 6 cut(s) 4, 53, 93, 116, 145, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 586
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 4 cut(s) 51, 60, 86, 524
Kzo9I GATC 2 cut(s) 32, 256
LpnPI CCDG 8 cut(s) 15, 57, 72, 126, 273, 486, 590, 615
Lsp1109I GCAGC 3 cut(s) 65, 331, 334
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 169, 491
MalI GATC 2 cut(s) 34, 258
MboI GATC 2 cut(s) 32, 256
MboII GAAGA 2 cut(s) 196, 440
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 147, 267
MluCI AATT 5 cut(s) 131, 406, 436, 502, 636
MlyI GAGTC 1 cut(s) 526
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 2 cut(s) 146, 187
MseI TTAA 3 cut(s) 306, 432, 500
MspI CCGG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 53, 586
NdeII GATC 2 cut(s) 32, 256
NlaIII CATG 4 cut(s) 51, 60, 86, 524
NlaIV GGNNCC 2 cut(s) 102, 198
NspI RCATGY 2 cut(s) 51, 60
PagI TCATGA 1 cut(s) 520
PfeI GAWTC 5 cut(s) 221, 328, 420, 476, 554
PkrI GCNGC 3 cut(s) 55, 321, 324
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
PsiI TTATAA 1 cut(s) 649
PspEI GGTNACC 1 cut(s) 491
PspN4I GGNNCC 2 cut(s) 102, 198
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 256
SaqAI TTAA 3 cut(s) 306, 432, 500
SatI GCNGC 3 cut(s) 54, 320, 323
Sau3AI GATC 2 cut(s) 32, 256
SchI GAGTC 1 cut(s) 526
SduI GDGCHC 2 cut(s) 147, 267
SetI ASST 7 cut(s) 171, 216, 241, 306, 314, 531, 634
SfcI CTRYAG 1 cut(s) 114
Sse9I AATT 5 cut(s) 131, 406, 436, 502, 636
TaaI ACNGT 2 cut(s) 105, 618
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 192
TasI AATT 5 cut(s) 131, 406, 436, 502, 636
TfiI GAWTC 5 cut(s) 221, 328, 420, 476, 554
Tru1I TTAA 3 cut(s) 306, 432, 500
Tru9I TTAA 3 cut(s) 306, 432, 500
TscAI CASTG 1 cut(s) 267
TseI GCWGC 3 cut(s) 53, 319, 322
TspRI CASTG 1 cut(s) 267
VneI GTGCAC 1 cut(s) 143
XapI RAATTY 2 cut(s) 131, 636
XceI RCATGY 2 cut(s) 51, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.