Rh2DG358400

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014053
Physical Location & Seq
Forward (+)
50471826 .. 50472582
757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG358400.1

Sequence Viewer

Length: 549 bp
ATGGTGAAGAATGCCAATGAAGCAAACCGGAGAAAGGTTGTTGATTCATTGGTATGGGAAGCTCTTTGCAGGCAAAAAGACCCGGTGCTTGGTCCTTACGGAGAGTATAGGATGATTTTCGATGAGCTCAAGATGTATAAAAATCATGAGAACCAAACGGTTCCTTTACAAGTGCAAAAGGGCATGTGTTACAAATCTCTGACGGATTTAGTTGCTTGGAACTATGAAACTAATGGGATTAGCGATGGAATAAATGGAGGAAATGGAATCACTACTACTAATAACAATTTGGATTATGATCTTCAGGTTAACGAAAACGTCAGAATCAATTCAGTCCCGCCATATGGTTATCCTTTAACTTGTGAGCAAGAAATTGCAGCAGAGAAGATAAAGCAAGTAAAAATAGCTGCTGATTCCATTGTTGTTCCAGTAGTACACCAGCAGGGGCATTCTATCAACAACATTAATCAGCAGTACTATATTTCCGGTCAACTTAATCAACACATTGGCAAGCCATTAGAAAGGACAATATGGGAAGGCGGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

182

Amino Acids

20.57

Weight (kDa)

5.8

Isoelectric Point (pI)

28.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 1 - 50 1.4e-06 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06280
fragaria_vesca FvH4_6g26950
malus_domestica MD07G1305100.v1.1
prunus_persica Prupe.3G126300_v2.0.a1 Prupe.3G126300_v2.0.a1
pyrus_communis pycom07g27850
rosa_chinensis RchiOBHm_Chr2g0128781
rosa_laevigata RLG00000019022
rosa_multiflora Rmu_co8412195.1_g000001 Rmu_sc0005514.1_g000018 Rmu_sc0018619.1_g000003
rosa_roxburghii Rroxscaffold_2G00115280
rosa_rugosa Rorug02G0280500
rosa_samantha Rh2BG341700 Rh2CG320600 Rh2DG358400
rosa_wichuraiana Rw2G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 338, 540
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 2 cut(s) 435, 476
AfiI CCNNNNNNNGG 3 cut(s) 34, 89, 344
AluBI AGCT 3 cut(s) 62, 127, 407
AluI AGCT 3 cut(s) 62, 127, 407
Alw21I GWGCWC 1 cut(s) 129
ApeKI GCWGC 2 cut(s) 377, 407
AseI ATTAAT 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 389, 394
BccI CCATC 1 cut(s) 239
BcnI CCSGG 1 cut(s) 83
BisI GCNGC 2 cut(s) 378, 408
BlsI GCNGC 2 cut(s) 379, 409
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 297
BsaWI WCCGGW 2 cut(s) 27, 485
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 89, 344
Bse1I ACTGG 1 cut(s) 428
Bse8I GATNNNNATC 1 cut(s) 297
BseGI GGATG 1 cut(s) 117
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 3 cut(s) 34, 89, 344
BseNI ACTGG 1 cut(s) 428
BseXI GCAGC 2 cut(s) 389, 394
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 3 cut(s) 28, 83, 486
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 3 cut(s) 34, 89, 344
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 2 cut(s) 16, 448
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 298, 542
BspACI CCGC 2 cut(s) 338, 540
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 162
BsrI ACTGG 1 cut(s) 428
BssMI GATC 2 cut(s) 298, 542
Bst4CI ACNGT 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 71, 512
BstF5I GGATG 1 cut(s) 117
BstKTI GATC 2 cut(s) 301, 545
BstMBI GATC 2 cut(s) 298, 542
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 389, 394
BtgZI GCGATG 1 cut(s) 258
BtsCI GGATG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 71, 512
CciI TCATGA 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 434, 475
CviAII CATG 2 cut(s) 146, 184
CviJI RGCY 4 cut(s) 62, 127, 407, 514
CviKI_1 RGCY 4 cut(s) 62, 127, 407, 514
CviQI GTAC 2 cut(s) 434, 475
DpnI GATC 2 cut(s) 300, 544
DpnII GATC 2 cut(s) 298, 542
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 2 cut(s) 149, 187
FaqI GGGAC 1 cut(s) 320
FatI CATG 2 cut(s) 145, 183
FauI CCCGC 1 cut(s) 345
FauNDI CATATG 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 378, 408
FokI GGATG 1 cut(s) 124
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 378, 408
GluI GCNGC 2 cut(s) 378, 408
HapII CCGG 3 cut(s) 28, 83, 486
Hin1II CATG 2 cut(s) 149, 187
HincII GTYRAC 2 cut(s) 310, 491
HindII GTYRAC 2 cut(s) 310, 491
HinfI GANTC 4 cut(s) 44, 267, 324, 413
HpaI GTTAAC 1 cut(s) 310
HpaII CCGG 3 cut(s) 28, 83, 486
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 310, 436, 491
Hpy188I TCNGA 2 cut(s) 201, 323
Hpy188III TCNNGA 2 cut(s) 130, 146
Hpy8I GTNNAC 3 cut(s) 310, 436, 491
HpyAV CCTTC 1 cut(s) 530
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 3 cut(s) 69, 175, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 2 cut(s) 149, 187
KspAI GTTAAC 1 cut(s) 310
Kzo9I GATC 2 cut(s) 298, 542
LpnPI CCDG 8 cut(s) 41, 55, 96, 290, 428, 441, 452, 499
Lsp1109I GCAGC 2 cut(s) 389, 394
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 300, 544
MboI GATC 2 cut(s) 298, 542
MboII GAAGA 3 cut(s) 19, 293, 397
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 3 cut(s) 286, 328, 372
MnlI CCTC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 328
MseI TTAA 4 cut(s) 309, 356, 465, 495
MslI CAYNNNNRTG 1 cut(s) 52
MspI CCGG 3 cut(s) 28, 83, 486
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 2 cut(s) 16, 448
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 343
NdeII GATC 2 cut(s) 298, 542
NlaIII CATG 2 cut(s) 149, 187
NlaIV GGNNCC 1 cut(s) 162
NspI RCATGY 1 cut(s) 187
PagI TCATGA 1 cut(s) 145
PctI GAATGC 2 cut(s) 16, 448
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 4 cut(s) 44, 267, 324, 413
PkrI GCNGC 2 cut(s) 379, 409
PshBI ATTAAT 1 cut(s) 465
Psp124BI GAGCTC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 92
RsaI GTAC 2 cut(s) 435, 476
RsaNI GTAC 2 cut(s) 434, 475
RseI CAYNNNNRTG 1 cut(s) 52
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 4 cut(s) 309, 356, 465, 495
SatI GCNGC 2 cut(s) 378, 408
Sau3AI GATC 2 cut(s) 298, 542
Sau96I GGNCC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 476
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 129
SetI ASST 6 cut(s) 39, 64, 129, 309, 321, 409
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 3 cut(s) 286, 328, 372
SsiI CCGC 2 cut(s) 338, 540
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 1 cut(s) 321
TaqI TCGA 1 cut(s) 120
TasI AATT 3 cut(s) 286, 328, 372
TatI WGTACW 2 cut(s) 433, 474
TfiI GAWTC 4 cut(s) 44, 267, 324, 413
Tru1I TTAA 4 cut(s) 309, 356, 465, 495
Tru9I TTAA 4 cut(s) 309, 356, 465, 495
TseI GCWGC 2 cut(s) 377, 407
TspDTI ATGAA 3 cut(s) 33, 36, 240
TspGWI ACGGA 2 cut(s) 114, 218
VpaK11BI GGWCC 1 cut(s) 92
VspI ATTAAT 1 cut(s) 465
XceI RCATGY 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.