FvH4_6g26950

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014053
Physical Location & Seq
Forward (+)
20632089 .. 20633162
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26950.t1

Sequence Viewer

Length: 717 bp
ATGCAGAGAAAGTGTCATGTCACACCAGGAACAATTCCAGCATGTGCAGCATGCAAGCATCAAAGGAAAAAGTGCAGCGAAGGTTGCACTCTGGCACCTTATTTTCCGGTGGAAAGGAATCGAGAATTCCAAGCCGTGCACAAAGTTTTTGGGGTTAGCAATGTAACAAAGATGGTGAAGAATGCGAATGAAGCAAACCGGAGAAAGGTTGTCGATTCACTAGTGTGGGAGGCTCTTTGCAGGCAAAAAGACCCGGTGCTTGGTCCTTATGGAGAGTACAGGATGATTTTTGATGAGCTGAAGACTTACAAAAGTCATGAGAACCAAACGGTTCCTTTGCAAGTTCAAAAGGGCATGTGTTACAAATCTCTAACGGATTTGGTTGCTTGGAACTATGAAACTAATGGGATTAGCAATGGAATGAATGGAGGAAATGGAATCGCTACTACTGACAGTTTGGATTATGATCTTCAGGTTAACGAAAACATGAGAATCGATTCAGTCCCGCCATATGGTTATCCTTTAAGTTGTGAGCAAGAAATTGCATCAGAGAAGATAAAGCAAGTAAAAATGGCTGCTGATTCCATTGTTGTACCAGTAGTACACCAGCAGGGGCATTCTATTAACAACATTAATCAGCAGTACTATATTTCAGGTCAACTTAATCAAATCATTGGGAAGCCATTAGAAAGGACTATATGGGAAGGAGGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

239

Amino Acids

26.76

Weight (kDa)

8.35

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 14 - 107 1.4e-32 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06280
fragaria_vesca FvH4_6g26950
malus_domestica MD07G1305100.v1.1
prunus_persica Prupe.3G126300_v2.0.a1 Prupe.3G126300_v2.0.a1
pyrus_communis pycom07g27850
rosa_chinensis RchiOBHm_Chr2g0128781
rosa_laevigata RLG00000019022
rosa_multiflora Rmu_co8412195.1_g000001 Rmu_sc0005514.1_g000018 Rmu_sc0018619.1_g000003
rosa_roxburghii Rroxscaffold_2G00115280
rosa_rugosa Rorug02G0280500
rosa_samantha Rh2BG341700 Rh2CG320600 Rh2DG358400
rosa_wichuraiana Rw2G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AciI CCGC 1 cut(s) 506
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 2 cut(s) 320, 455
AfaI GTAC 4 cut(s) 278, 594, 603, 644
AfiI CCNNNNNNNGG 3 cut(s) 205, 260, 512
AgsI TTSAA 1 cut(s) 347
AhlI ACTAGT 1 cut(s) 220
AjnI CCWGG 1 cut(s) 25
AleI CACNNNNGTG 1 cut(s) 223
AluBI AGCT 1 cut(s) 298
AluI AGCT 1 cut(s) 298
Alw21I GWGCWC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 137
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 3 cut(s) 47, 75, 575
ApoI RAATTY 1 cut(s) 125
AseI ATTAAT 1 cut(s) 633
Asp700I GAANNNNTTC 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 3 cut(s) 59, 87, 562
BccI CCATC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 27
BcnI CCSGG 1 cut(s) 254
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 1 cut(s) 221
BisI GCNGC 3 cut(s) 48, 76, 576
BlsI GCNGC 3 cut(s) 49, 77, 577
BmcAI AGTACT 1 cut(s) 644
Bme1390I CCNGG 2 cut(s) 27, 254
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 96, 333
BmrFI CCNGG 2 cut(s) 27, 254
BmsI GCATC 2 cut(s) 67, 554
BpiI GAAGAC 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 495
BsaBI GATNNNNATC 1 cut(s) 465
BsaWI WCCGGW 2 cut(s) 106, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 260, 512
Bse1I ACTGG 1 cut(s) 596
Bse3DI GCAATG 2 cut(s) 166, 421
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 27
BseCI ATCGAT 1 cut(s) 495
BseGI GGATG 1 cut(s) 288
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 3 cut(s) 205, 260, 512
BseMI GCAATG 2 cut(s) 166, 421
BseNI ACTGG 1 cut(s) 596
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 3 cut(s) 59, 87, 562
BsgI GTGCAG 2 cut(s) 66, 94
BshNI GGYRCC 1 cut(s) 94
BshVI ATCGAT 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 141
BsiSI CCGG 3 cut(s) 107, 199, 254
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 3 cut(s) 205, 260, 512
BsmFI GGGAC 1 cut(s) 488
BsmI GAATGC 2 cut(s) 187, 616
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 2 cut(s) 466, 710
BspACI CCGC 1 cut(s) 506
BspDI ATCGAT 1 cut(s) 495
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 96, 333
BspT107I GGYRCC 1 cut(s) 94
BsrDI GCAATG 2 cut(s) 166, 421
BsrI ACTGG 1 cut(s) 596
BssMI GATC 2 cut(s) 466, 710
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 331, 455
BstC8I GCNNGC 3 cut(s) 52, 56, 242
BstF5I GGATG 1 cut(s) 288
BstKTI GATC 2 cut(s) 469, 713
BstMBI GATC 2 cut(s) 466, 710
BstMWI GCNNNNNNNGC 3 cut(s) 47, 84, 191
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 3 cut(s) 45, 54, 358
BstSCI CCNGG 2 cut(s) 25, 252
BstSLI GKGCMC 1 cut(s) 141
BstV1I GCAGC 3 cut(s) 59, 87, 562
BstV2I GAAGAC 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 495
BsuTUI ATCGAT 1 cut(s) 495
BtsCI GGATG 1 cut(s) 288
Cac8I GCNNGC 3 cut(s) 52, 56, 242
CciI TCATGA 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 495
Csp6I GTAC 4 cut(s) 277, 593, 602, 643
CviAII CATG 6 cut(s) 17, 42, 51, 317, 355, 487
CviJI RGCY 5 cut(s) 134, 233, 298, 575, 682
CviKI_1 RGCY 5 cut(s) 134, 233, 298, 575, 682
CviQI GTAC 4 cut(s) 277, 593, 602, 643
DpnI GATC 2 cut(s) 468, 712
DpnII GATC 2 cut(s) 466, 710
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 320, 455
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 25
FaeI CATG 6 cut(s) 20, 45, 54, 320, 358, 490
FaqI GGGAC 1 cut(s) 488
FatI CATG 6 cut(s) 16, 41, 50, 316, 354, 486
FauI CCCGC 1 cut(s) 513
FauNDI CATATG 1 cut(s) 511
Fnu4HI GCNGC 3 cut(s) 48, 76, 576
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 3 cut(s) 48, 76, 576
FspBI CTAG 1 cut(s) 221
GluI GCNGC 3 cut(s) 48, 76, 576
HapII CCGG 3 cut(s) 107, 199, 254
Hin1II CATG 6 cut(s) 20, 45, 54, 320, 358, 490
HincII GTYRAC 2 cut(s) 478, 659
HindII GTYRAC 2 cut(s) 478, 659
HinfI GANTC 6 cut(s) 118, 215, 438, 492, 497, 581
HpaI GTTAAC 1 cut(s) 478
HpaII CCGG 3 cut(s) 107, 199, 254
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 4 cut(s) 139, 478, 604, 659
Hpy188I TCNGA 1 cut(s) 550
Hpy188III TCNNGA 2 cut(s) 122, 317
Hpy8I GTNNAC 4 cut(s) 139, 478, 604, 659
HpyAV CCTTC 2 cut(s) 74, 698
HpyCH4III ACNGT 2 cut(s) 331, 455
HpyCH4V TGCA 9 cut(s) 4, 47, 54, 75, 87, 139, 240, 340, 545
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 84, 191
Hsp92II CATG 6 cut(s) 20, 45, 54, 320, 358, 490
KspAI GTTAAC 1 cut(s) 478
Kzo9I GATC 2 cut(s) 466, 710
Lsp1109I GCAGC 3 cut(s) 59, 87, 562
LweI GCATC 2 cut(s) 67, 554
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 3 cut(s) 19, 163, 359
MalI GATC 2 cut(s) 468, 712
MboI GATC 2 cut(s) 466, 710
MboII GAAGA 4 cut(s) 190, 313, 461, 565
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 3 cut(s) 33, 125, 540
MnlI CCTC 3 cut(s) 223, 422, 701
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 5 cut(s) 477, 524, 624, 633, 663
MslI CAYNNNNRTG 1 cut(s) 223
MspI CCGG 3 cut(s) 107, 199, 254
MspR9I CCNGG 2 cut(s) 27, 254
Mva1269I GAATGC 2 cut(s) 187, 616
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 47, 84, 191
NciI CCSGG 1 cut(s) 254
NdeI CATATG 1 cut(s) 511
NdeII GATC 2 cut(s) 466, 710
NlaIII CATG 6 cut(s) 20, 45, 54, 320, 358, 490
NlaIV GGNNCC 2 cut(s) 96, 333
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 3 cut(s) 45, 54, 358
OliI CACNNNNGTG 1 cut(s) 223
PaeI GCATGC 1 cut(s) 54
PagI TCATGA 1 cut(s) 316
PctI GAATGC 2 cut(s) 187, 616
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 6 cut(s) 118, 215, 438, 492, 497, 581
PkrI GCNGC 3 cut(s) 49, 77, 577
PshBI ATTAAT 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 96, 333
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 4 cut(s) 278, 594, 603, 644
RsaNI GTAC 4 cut(s) 277, 593, 602, 643
RseI CAYNNNNRTG 1 cut(s) 223
SaqAI TTAA 5 cut(s) 477, 524, 624, 633, 663
SatI GCNGC 3 cut(s) 48, 76, 576
Sau3AI GATC 2 cut(s) 466, 710
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 644
ScrFI CCNGG 2 cut(s) 27, 254
SduI GDGCHC 1 cut(s) 141
SetI ASST 6 cut(s) 85, 100, 210, 300, 477, 658
SfaNI GCATC 2 cut(s) 67, 554
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 223
SpeI ACTAGT 1 cut(s) 220
SphI GCATGC 1 cut(s) 54
Sse9I AATT 3 cut(s) 33, 125, 540
SsiI CCGC 1 cut(s) 506
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 25, 252
TaaI ACNGT 2 cut(s) 331, 455
TaqI TCGA 3 cut(s) 121, 213, 495
TasI AATT 3 cut(s) 33, 125, 540
TatI WGTACW 3 cut(s) 276, 601, 642
TfiI GAWTC 6 cut(s) 118, 215, 438, 492, 497, 581
Tru1I TTAA 5 cut(s) 477, 524, 624, 633, 663
Tru9I TTAA 5 cut(s) 477, 524, 624, 633, 663
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 3 cut(s) 47, 75, 575
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 3 cut(s) 204, 411, 437
TspGWI ACGGA 1 cut(s) 389
VneI GTGCAC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 263
VspI ATTAAT 1 cut(s) 633
XapI RAATTY 1 cut(s) 125
XceI RCATGY 3 cut(s) 45, 54, 358
XmnI GAANNNNTTC 1 cut(s) 496
XspI CTAG 1 cut(s) 221
ZrmI AGTACT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.