pycom07g27850

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0014053
Physical Location & Seq
Forward (+)
27394144 .. 27394806
663 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g27850.1

Sequence Viewer

Length: 663 bp
ATGCAGAGGACGAATAACAATGGCACAGCAGGATCAACACAACCGGCATGTGCAGCATGCAAACATCAAAGGAAAAAGTGTCATGCTGGTTGCATATTGGCACCGTATTTTCCTGCTGATAGAACTCGGGAATTCCTCGCCGTGCACAAAGTTTTCGGGGTCAGCAACGTAACAAAGATGGTGAAGAATGTCGAGGAACCCAATCGGAGAAAGGTCGCTGAATCGTTGGTATGGGAAGCTCTTTGTAGGCAAAAAGATCCAGTGCTCGGTGCGTACGGAGAGTATAGGATGGTTTCTGATGAGCTTAAAAGGTATAAGCAGCAGCAGAATCGTGAAAACCATACTGTTCCTTTACAAGTGCAAAAGGGATTGTGTTTCAACAAATCCTTGTCGGATTTGGTGGGTAATTGGAATGGTGGAATCACTAATGGAATCACTAATGTTAACAATTCGGGTTATCTTCGTGATAACGACGATGTTATACCGGATTCAGCCCCGTTTGGTTACCCTTTAAATTGTGAACAACAGAGTCATCAGAAGGTGGCAAAGCAAGTAAAAATGGTAGATTCTGTTGTTGTTCCAATACACCAGCAACAGCAGCATTACTCAGTCAACAATATCAATCAGCGGTATTATCTTACAGGTAAAATTTGTTGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

221

Amino Acids

24.84

Weight (kDa)

9.2

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 16 - 111 4.3e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06280
fragaria_vesca FvH4_6g26950
malus_domestica MD07G1305100.v1.1
prunus_persica Prupe.3G126300_v2.0.a1 Prupe.3G126300_v2.0.a1
pyrus_communis pycom07g27850
rosa_chinensis RchiOBHm_Chr2g0128781
rosa_laevigata RLG00000019022
rosa_multiflora Rmu_co8412195.1_g000001 Rmu_sc0005514.1_g000018 Rmu_sc0018619.1_g000003
rosa_roxburghii Rroxscaffold_2G00115280
rosa_rugosa Rorug02G0280500
rosa_samantha Rh2BG341700 Rh2CG320600 Rh2DG358400
rosa_wichuraiana Rw2G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 661
AccB1I GGYRCC 1 cut(s) 100
AciI CCGC 1 cut(s) 628
AclWI GGATC 2 cut(s) 40, 251
AcsI RAATTY 2 cut(s) 131, 648
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 2 cut(s) 239, 304
AluI AGCT 2 cut(s) 239, 304
Alw21I GWGCWC 2 cut(s) 147, 267
Alw44I GTGCAC 1 cut(s) 143
AlwI GGATC 2 cut(s) 40, 251
Ama87I CYCGRG 1 cut(s) 126
ApaLI GTGCAC 1 cut(s) 143
ApeKI GCWGC 4 cut(s) 53, 319, 322, 598
ApoI RAATTY 2 cut(s) 131, 648
AsuHPI GGTGA 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 126
BaeGI GKGCMC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 100
Bbv12I GWGCWC 2 cut(s) 147, 267
BbvI GCAGC 4 cut(s) 65, 331, 334, 610
BccI CCATC 2 cut(s) 172, 283
BceAI ACGGC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BisI GCNGC 4 cut(s) 54, 320, 323, 599
BlsI GCNGC 4 cut(s) 55, 321, 324, 600
BmeT110I CYCGRG 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 102, 198
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 1 cut(s) 621
BseNI ACTGG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 4 cut(s) 65, 331, 334, 610
BsgI GTGCAG 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 100
BsiHKAI GWGCWC 2 cut(s) 147, 267
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 2 cut(s) 44, 485
BsiWI CGTACG 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 2 cut(s) 147, 267
Bsp143I GATC 2 cut(s) 32, 256
BspACI CCGC 1 cut(s) 628
BspCNI CTCAG 1 cut(s) 620
BspLI GGNNCC 2 cut(s) 102, 198
BspPI GGATC 2 cut(s) 40, 251
BspT107I GGYRCC 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 43
BssMI GATC 2 cut(s) 32, 256
Bst4CI ACNGT 2 cut(s) 105, 346
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 607
BstEII GGTNACC 1 cut(s) 503
BstF5I GGATG 1 cut(s) 294
BstKTI GATC 2 cut(s) 35, 259
BstMBI GATC 2 cut(s) 32, 256
BstMWI GCNNNNNNNGC 2 cut(s) 53, 598
BstNSI RCATGY 2 cut(s) 51, 60
BstPI GGTNACC 1 cut(s) 503
BstSLI GKGCMC 1 cut(s) 147
BstV1I GCAGC 4 cut(s) 65, 331, 334, 610
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BtsCI GGATG 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 43
Csp6I GTAC 1 cut(s) 274
CviAII CATG 3 cut(s) 48, 57, 83
CviJI RGCY 3 cut(s) 239, 304, 494
CviKI_1 RGCY 3 cut(s) 239, 304, 494
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 1 cut(s) 607
DpnI GATC 2 cut(s) 34, 258
DpnII GATC 2 cut(s) 32, 256
DraI TTTAAA 1 cut(s) 513
Eco88I CYCGRG 1 cut(s) 126
Eco91I GGTNACC 1 cut(s) 503
EcoO65I GGTNACC 1 cut(s) 503
EcoRI GAATTC 1 cut(s) 131
FaeI CATG 3 cut(s) 51, 60, 86
FatI CATG 3 cut(s) 47, 56, 82
Fnu4HI GCNGC 4 cut(s) 54, 320, 323, 599
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 4 cut(s) 54, 320, 323, 599
GluI GCNGC 4 cut(s) 54, 320, 323, 599
HapII CCGG 2 cut(s) 44, 485
Hin1II CATG 3 cut(s) 51, 60, 86
HincII GTYRAC 2 cut(s) 445, 613
HindII GTYRAC 2 cut(s) 445, 613
HinfI GANTC 7 cut(s) 221, 328, 420, 432, 488, 529, 566
HpaI GTTAAC 1 cut(s) 445
HpaII CCGG 2 cut(s) 44, 485
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 4 cut(s) 145, 445, 521, 613
Hpy188I TCNGA 4 cut(s) 207, 298, 394, 537
Hpy188III TCNNGA 3 cut(s) 128, 332, 464
Hpy8I GTNNAC 4 cut(s) 145, 445, 521, 613
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 2 cut(s) 105, 346
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 6 cut(s) 4, 53, 60, 93, 145, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 598
HpyF3I CTNAG 1 cut(s) 607
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 3 cut(s) 51, 60, 86
KspAI GTTAAC 1 cut(s) 445
Kzo9I GATC 2 cut(s) 32, 256
LpnPI CCDG 8 cut(s) 15, 57, 72, 126, 273, 498, 602, 627
Lsp1109I GCAGC 4 cut(s) 65, 331, 334, 610
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 2 cut(s) 169, 503
MalI GATC 2 cut(s) 34, 258
MboI GATC 2 cut(s) 32, 256
MboII GAAGA 2 cut(s) 196, 452
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 147, 267
MluCI AATT 5 cut(s) 131, 406, 448, 514, 648
MlyI GAGTC 1 cut(s) 538
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 2 cut(s) 146, 187
MseI TTAA 3 cut(s) 306, 444, 512
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 2 cut(s) 44, 485
MwoI GCNNNNNNNGC 2 cut(s) 53, 598
NdeII GATC 2 cut(s) 32, 256
NlaIII CATG 3 cut(s) 51, 60, 86
NlaIV GGNNCC 2 cut(s) 102, 198
NspI RCATGY 2 cut(s) 51, 60
PaeI GCATGC 1 cut(s) 60
PfeI GAWTC 6 cut(s) 221, 328, 420, 432, 488, 566
Pfl23II CGTACG 1 cut(s) 273
PkrI GCNGC 4 cut(s) 55, 321, 324, 600
PleI GAGTC 1 cut(s) 537
PpsI GAGTC 1 cut(s) 537
PsiI TTATAA 1 cut(s) 661
PspEI GGTNACC 1 cut(s) 503
PspLI CGTACG 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 102, 198
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SaqAI TTAA 3 cut(s) 306, 444, 512
SatI GCNGC 4 cut(s) 54, 320, 323, 599
Sau3AI GATC 2 cut(s) 32, 256
SchI GAGTC 1 cut(s) 538
SduI GDGCHC 2 cut(s) 147, 267
SetI ASST 7 cut(s) 171, 216, 241, 306, 314, 543, 646
SphI GCATGC 1 cut(s) 60
Sse9I AATT 5 cut(s) 131, 406, 448, 514, 648
SsiI CCGC 1 cut(s) 628
TaaI ACNGT 2 cut(s) 105, 346
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 192
TasI AATT 5 cut(s) 131, 406, 448, 514, 648
TfiI GAWTC 6 cut(s) 221, 328, 420, 432, 488, 566
Tru1I TTAA 3 cut(s) 306, 444, 512
Tru9I TTAA 3 cut(s) 306, 444, 512
TscAI CASTG 1 cut(s) 267
TseI GCWGC 4 cut(s) 53, 319, 322, 598
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 267
VneI GTGCAC 1 cut(s) 143
XapI RAATTY 2 cut(s) 131, 648
XceI RCATGY 2 cut(s) 51, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.