Prupe.3G126300_v2.0.a1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014053
Physical Location & Seq
Forward (+)
11621998 .. 11623827
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G126300.1

Sequence Viewer

Length: 693 bp
ATGCAGAGGAAGAATAATGGCACACCAGGAACACAACCAGCATGTGCAGCATGCAAGCATCAAAGGAAAAAGTGTCACGATGGGTGCGTATTGGCGCCTTACTTTCCTGCTGATAGAACCCGGGAATTCCTCGCTGTGCATAAAGTTTTCGGGGTAAGCAACGTAACGAAGATGGTGAAGAATGCCAATGAAGCGAATCGGAGAAAGGTGGTTGATTCGTTGGTCTGGGAAGCTCTTTGTAGGCAAAAAGATCCCGTGCTGGGTCCTTACGGGGAGTACAGGATGGTTTTTGATGAGCTAAAGCGATATAAAAACCATGAAATTCAAATGGTTCATCCTTCACAAGTGCAAAAGGGAATGTGTTTTAGTAAATCTTTGTCGGATTTTGTTGGTTGGAATTGTGGAGGAGCTAATGGAATCAGTAATCACAACATTAATTTGGGTGGTTATCTTCATGAGAACGAGAATGTGATAATAGATTCAGCCTCATATGGTTATCCTTCAAATTGTGAGTTACAAAGTCCAGAGAATATCATAAAGCAAGCAAAACTGGTTGATTCTGTTGTTCTTCCACTAAACCAGCACCAGCAGCGTTCAATCAACAACATTAATCAGCAGTATTATCTTTCAGGTCAACTTAATCAAATCATTAGCAAGCCCATAGAAGACACAATATGGGAAGGAGGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

231

Amino Acids

25.91

Weight (kDa)

8.72

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06280
fragaria_vesca FvH4_6g26950
malus_domestica MD07G1305100.v1.1
prunus_persica Prupe.3G126300_v2.0.a1 Prupe.3G126300_v2.0.a1
pyrus_communis pycom07g27850
rosa_chinensis RchiOBHm_Chr2g0128781
rosa_laevigata RLG00000019022
rosa_multiflora Rmu_co8412195.1_g000001 Rmu_sc0005514.1_g000018 Rmu_sc0018619.1_g000003
rosa_roxburghii Rroxscaffold_2G00115280
rosa_rugosa Rorug02G0280500
rosa_samantha Rh2BG341700 Rh2CG320600 Rh2DG358400
rosa_wichuraiana Rw2G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 2 cut(s) 125, 321
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 3 cut(s) 326, 504, 597
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 3 cut(s) 233, 298, 410
AluI AGCT 3 cut(s) 233, 298, 410
AlwI GGATC 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 120
ApeKI GCWGC 2 cut(s) 47, 589
ApoI RAATTY 2 cut(s) 125, 321
AseI ATTAAT 2 cut(s) 435, 609
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 2 cut(s) 121, 122
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 1 cut(s) 263
BanI GGYRCC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 672
BbvI GCAGC 2 cut(s) 59, 601
BccI CCATC 3 cut(s) 74, 166, 277
BciT130I CCWGG 1 cut(s) 27
BcnI CCSGG 2 cut(s) 121, 122
BfoI RGCGCY 1 cut(s) 98
BisI GCNGC 2 cut(s) 48, 590
BlsI GCNGC 2 cut(s) 49, 591
Bme1390I CCNGG 3 cut(s) 27, 121, 122
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 96, 264
BmrFI CCNGG 3 cut(s) 27, 121, 122
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 672
BpuMI CCSGG 2 cut(s) 121, 122
BsaHI GRCGYC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 288, 334
BseLI CCNNNNNNNGG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 555
BseRI GAGGAG 1 cut(s) 420
BseXI GCAGC 2 cut(s) 59, 601
BseYI CCCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 260
BsmI GAATGC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 120
Bsp143I GATC 1 cut(s) 250
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 96, 264
BspPI GGATC 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 555
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 1 cut(s) 250
BssNI GRCGYC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 4 cut(s) 52, 56, 543, 656
BstF5I GGATG 2 cut(s) 288, 334
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 3 cut(s) 47, 191, 589
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 2 cut(s) 45, 54
BstSCI CCNGG 3 cut(s) 25, 119, 120
BstV1I GCAGC 2 cut(s) 59, 601
BstV2I GAAGAC 1 cut(s) 672
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BtsCI GGATG 2 cut(s) 288, 334
Cac8I GCNNGC 4 cut(s) 52, 56, 543, 656
CciI TCATGA 1 cut(s) 454
CfoI GCGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 263
Cfr9I CCCGGG 1 cut(s) 120
Csp6I GTAC 1 cut(s) 277
CviAII CATG 4 cut(s) 42, 51, 317, 455
CviJI RGCY 5 cut(s) 233, 298, 410, 485, 658
CviKI_1 RGCY 5 cut(s) 233, 298, 410, 485, 658
CviQI GTAC 1 cut(s) 277
DinI GGCGCC 1 cut(s) 96
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 25
EgeI GGCGCC 1 cut(s) 96
EheI GGCGCC 1 cut(s) 96
FaeI CATG 4 cut(s) 45, 54, 320, 458
FatI CATG 4 cut(s) 41, 50, 316, 454
FauNDI CATATG 1 cut(s) 490
Fnu4HI GCNGC 2 cut(s) 48, 590
FokI GGATG 2 cut(s) 295, 321
Fsp4HI GCNGC 2 cut(s) 48, 590
GlaI GCGC 1 cut(s) 96
GluI GCNGC 2 cut(s) 48, 590
GsaI CCCAGC 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 98
HapII CCGG 1 cut(s) 121
HhaI GCGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 95
Hin1II CATG 4 cut(s) 45, 54, 320, 458
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 1 cut(s) 635
HindII GTYRAC 1 cut(s) 635
HinfI GANTC 5 cut(s) 196, 215, 417, 479, 557
HpaII CCGG 1 cut(s) 121
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 635
Hpy188I TCNGA 2 cut(s) 201, 382
Hpy188III TCNNGA 3 cut(s) 77, 455, 524
Hpy8I GTNNAC 1 cut(s) 635
HpyAV CCTTC 3 cut(s) 348, 510, 674
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 5 cut(s) 4, 47, 54, 139, 349
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 191, 589
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 95
Hsp92II CATG 4 cut(s) 45, 54, 320, 458
HspAI GCGC 1 cut(s) 95
KasI GGCGCC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 407
Lsp1109I GCAGC 2 cut(s) 59, 601
LweI GCATC 1 cut(s) 67
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 3 cut(s) 74, 163, 513
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 6 cut(s) 22, 181, 190, 443, 560, 677
MflI RGATCY 1 cut(s) 250
MluCI AATT 5 cut(s) 125, 321, 397, 436, 505
Mly113I GGCGCC 1 cut(s) 95
MmeI TCCRAC 2 cut(s) 360, 374
MnlI CCTC 4 cut(s) 140, 398, 496, 677
MseI TTAA 3 cut(s) 435, 609, 639
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 3 cut(s) 27, 121, 122
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 47, 191, 589
NarI GGCGCC 1 cut(s) 95
NciI CCSGG 2 cut(s) 121, 122
NdeI CATATG 1 cut(s) 490
NdeII GATC 1 cut(s) 250
NlaIII CATG 4 cut(s) 45, 54, 320, 458
NlaIV GGNNCC 2 cut(s) 96, 264
NmuCI GTSAC 1 cut(s) 74
NspI RCATGY 2 cut(s) 45, 54
PaeI GCATGC 1 cut(s) 54
PagI TCATGA 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 5 cut(s) 196, 215, 417, 479, 557
PkrI GCNGC 2 cut(s) 49, 591
PluTI GGCGCC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 263
PshBI ATTAAT 2 cut(s) 435, 609
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 96, 264
PspPI GGNCC 1 cut(s) 263
PspPPI RGGWCCY 1 cut(s) 263
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SaqAI TTAA 3 cut(s) 435, 609, 639
SatI GCNGC 2 cut(s) 48, 590
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 3 cut(s) 27, 121, 122
SetI ASST 6 cut(s) 165, 210, 235, 300, 412, 634
SfaNI GCATC 1 cut(s) 67
SfoI GGCGCC 1 cut(s) 96
SinI GGWCC 1 cut(s) 263
SmaI CCCGGG 1 cut(s) 122
SphI GCATGC 1 cut(s) 54
Sse9I AATT 5 cut(s) 125, 321, 397, 436, 505
SspDI GGCGCC 1 cut(s) 94
StyD4I CCNGG 3 cut(s) 25, 119, 120
TaiI ACGT 1 cut(s) 165
TasI AATT 5 cut(s) 125, 321, 397, 436, 505
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 5 cut(s) 196, 215, 417, 479, 557
Tru1I TTAA 3 cut(s) 435, 609, 639
Tru9I TTAA 3 cut(s) 435, 609, 639
TseFI GTSAC 1 cut(s) 74
TseI GCWGC 2 cut(s) 47, 589
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 4 cut(s) 204, 323, 333, 443
TspMI CCCGGG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 263
VspI ATTAAT 2 cut(s) 435, 609
XapI RAATTY 2 cut(s) 125, 321
XceI RCATGY 2 cut(s) 45, 54
XmaI CCCGGG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.