Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014335

Physical Location & Seq

Genomic Coordinates Reverse (-)

1931229 .. 1932429

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACGACTATTGAGATGAGAGTTCACATGGATTGTGTGGGATGCGAAAGCAGAGTTAAAAATGCGCTTCAAAAGATGAGAGGAGTGGATGCAGTTGAAATCGACATGGTGCAGCAGAAAGTGACGGTGACTGGCTATGCCGATCAGAAGAAGGTTCTGAAGAAAGTGAGAAAAACCGGCAGGCGAGCTGAGCTATGGCAGCTTCCTTATAACCCTGACCACATGGGCGGAAGCAGCAGCAACGGCGGCTACTTCTACAACCCTCAGGGCTGCAACGGCCCAATCAACCACGCCGCACCAGTCCCGACTTCGTCTTACAATTATTACAAGCATGGCTACGATAGCAATGACTATTCGTCTTACCGCCACCACCCTGTTCATGCCTCTATCTTCAGCCACCAAACTGGTTCTAAGTTTAGTGATGAGAATCCTAACGCTTGTTCTATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0006950 GO:0008150 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0019725 GO:0030001 GO:0030003 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055073 GO:0055076 GO:0055080 GO:0055082 GO:0061687 GO:0065007 GO:0065008 GO:0071585 GO:0072507 GO:0097501 GO:0098754 GO:0098771 GO:1990170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

150

Amino Acids

16.85

Weight (kDa)

8.86

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	7 - 61	7.1e-16	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06330
fragaria_vesca	FvH4_6g27360 FvH4_6g27360
malus_domestica	MD09G1238100.v1.1
prunus_persica	Prupe.3G118600_v2.0.a1
pyrus_communis	pycom09g15660
rosa_chinensis	RchiOBHm_Chr2g0129621
rosa_laevigata	RLG00000019090
rosa_multiflora	Rmu_sc0011456.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114510
rosa_rugosa	Rorug02G0287500
rosa_samantha	Rh2AG339200 Rh2BG348000 Rh2CG326700 Rh2DG366200
rosa_wichuraiana	Rw2G027870 Rw2G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	210
AciI	CCGC	4 cut(s)	228, 246, 294, 364
AcuI	CTGAAG	2 cut(s)	179, 376
AgsI	TTSAA	2 cut(s)	71, 98
AhdI	GACNNNNNGTC	1 cut(s)	355
AluBI	AGCT	3 cut(s)	188, 193, 202
AluI	AGCT	3 cut(s)	188, 193, 202
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	5 cut(s)	112, 199, 234, 237, 270
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	139
AxyI	CCTNAGG	1 cut(s)	264
BbvI	GCAGC	5 cut(s)	124, 211, 246, 249, 257
BceAI	ACGGC	2 cut(s)	259, 292
BisI	GCNGC	7 cut(s)	113, 200, 235, 238, 247, 271, 294
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	7 cut(s)	114, 201, 236, 239, 248, 272, 295
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	278
BmsI	GCATC	2 cut(s)	32, 79
Bpu1102I	GCTNAGC	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	426
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	3 cut(s)	136, 299, 409
Bse21I	CCTNAGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	352
Bse8I	GATNNNNATC	1 cut(s)	426
BseGI	GGATG	2 cut(s)	47, 94
BseJI	GATNNNNATC	1 cut(s)	426
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	180, 278
BseNI	ACTGG	3 cut(s)	136, 299, 409
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	5 cut(s)	124, 211, 246, 249, 257
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	279
Bsp143I	GATC	1 cut(s)	142
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	4 cut(s)	228, 246, 294, 364
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	181, 277
BsrDI	GCAATG	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	3 cut(s)	136, 299, 409
BssAI	RCCGGY	1 cut(s)	176
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	182, 186
BstDEI	CTNAG	3 cut(s)	189, 264, 411
BstF5I	GGATG	2 cut(s)	47, 94
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	7 cut(s)	190, 199, 234, 243, 246, 276, 342
BstV1I	GCAGC	5 cut(s)	124, 211, 246, 249, 257
BstXI	CCANNNNNNTGG	1 cut(s)	404
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	47, 94
Cac8I	GCNNGC	2 cut(s)	182, 186
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	278
CviAII	CATG	6 cut(s)	28, 106, 223, 332, 380, 448
CviJI	RGCY	9 cut(s)	135, 188, 193, 202, 249, 270, 279, 336, 396
CviKI_1	RGCY	9 cut(s)	135, 188, 193, 202, 249, 270, 279, 336, 396
DdeI	CTNAG	3 cut(s)	189, 264, 411
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
DriI	GACNNNNNGTC	1 cut(s)	355
Eam1105I	GACNNNNNGTC	1 cut(s)	355
EciI	GGCGGA	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	179, 376
Eco81I	CCTNAGG	1 cut(s)	264
FaeI	CATG	6 cut(s)	31, 109, 226, 335, 383, 451
FaiI	YATR	9 cut(s)	29, 107, 138, 196, 210, 224, 333, 381, 449
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	6 cut(s)	27, 105, 222, 331, 379, 447
Fnu4HI	GCNGC	7 cut(s)	113, 200, 235, 238, 247, 271, 294
FokI	GGATG	2 cut(s)	54, 101
Fsp4HI	GCNGC	7 cut(s)	113, 200, 235, 238, 247, 271, 294
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	7 cut(s)	113, 200, 235, 238, 247, 271, 294
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	6 cut(s)	31, 109, 226, 335, 383, 451
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	1 cut(s)	427
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	147, 159
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	3 cut(s)	92, 112, 273
HpyF10VI	GCNNNNNNNGC	7 cut(s)	190, 199, 234, 243, 246, 276, 342
HpyF3I	CTNAG	3 cut(s)	189, 264, 411
Hsp92II	CATG	6 cut(s)	31, 109, 226, 335, 383, 451
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	8 cut(s)	117, 166, 190, 228, 251, 312, 387, 390
Lsp1109I	GCAGC	5 cut(s)	124, 211, 246, 249, 257
LweI	GCATC	2 cut(s)	32, 79
MaeIII	GTNAC	2 cut(s)	121, 127
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	3 cut(s)	160, 172, 382
MluCI	AATT	1 cut(s)	319
MnlI	CCTC	3 cut(s)	74, 273, 394
MseI	TTAA	1 cut(s)	57
MspI	CCGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	7 cut(s)	190, 199, 234, 243, 246, 276, 342
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	6 cut(s)	31, 109, 226, 335, 383, 451
NmuCI	GTSAC	2 cut(s)	121, 127
PfeI	GAWTC	1 cut(s)	427
PflFI	GACNNNGTC	1 cut(s)	310
PkrI	GCNGC	7 cut(s)	114, 201, 236, 239, 248, 272, 295
PsiI	TTATAA	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	278
PsyI	GACNNNGTC	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	7 cut(s)	113, 200, 235, 238, 247, 271, 294
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	278
SetI	ASST	4 cut(s)	156, 190, 195, 204
SfaNI	GCATC	2 cut(s)	32, 79
Sse9I	AATT	1 cut(s)	319
SsiI	CCGC	4 cut(s)	228, 246, 294, 364
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	319
TauI	GCSGC	2 cut(s)	249, 296
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseFI	GTSAC	2 cut(s)	121, 127
TseI	GCWGC	5 cut(s)	112, 199, 234, 237, 270
Tsp45I	GTSAC	2 cut(s)	121, 127
TspDTI	ATGAA	1 cut(s)	368
Tth111I	GACNNNGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.