Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014335

Physical Location & Seq

Genomic Coordinates Reverse (-)

20946076 .. 20947416

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGACGACAATAGAGATGAGAGTGCATATGGACTGCCCCGGATGCGAGAGCAAGGTTAGAAGTACACTTCAGAAGCTAAAAGGTATAGACAACGTTGAGATAGACATGGCTCTGCAGAAGGTCTCAGTGACCGGGAGGGCAGATCTAGACCAAAAGAAAGTTCTCAAGACGGTTCGAAAAACTGGACGAAGAGCTGAGCTCTGGCAATTCCCCTTGATTAATTCAAATGCAGACAACAGCTATGTGTACAATCAGAGTCAGTGTAATGGCCCGATCAATCACTATGCTCCGCAGCCTTCCTCATCTTACAACTACTACAAGCACGGTTATGACAGTGGTTCTTCTTCTTCTAACTATGCATATTCTCACAACCCTGCACATTCCTCCGTTTACGGGTATCAACCTACGACAGCCTTCAGTGACGAGAACCCTAATGCTTGTTCTGTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

151

Amino Acids

16.78

Weight (kDa)

8.31

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	7 - 63	2.5e-14	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06330
fragaria_vesca	FvH4_6g27360 FvH4_6g27360
malus_domestica	MD09G1238100.v1.1
prunus_persica	Prupe.3G118600_v2.0.a1
pyrus_communis	pycom09g15660
rosa_chinensis	RchiOBHm_Chr2g0129621
rosa_laevigata	RLG00000019090
rosa_multiflora	Rmu_sc0011456.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114510
rosa_rugosa	Rorug02G0287500
rosa_samantha	Rh2AG339200 Rh2BG348000 Rh2CG326700 Rh2DG366200
rosa_wichuraiana	Rw2G027870 Rw2G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	290
AclI	AACGTT	1 cut(s)	93
AcuI	CTGAAG	2 cut(s)	53, 400
AfaI	GTAC	2 cut(s)	64, 248
AfiI	CCNNNNNNNGG	1 cut(s)	393
AgsI	TTSAA	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AluBI	AGCT	4 cut(s)	76, 194, 199, 240
AluI	AGCT	4 cut(s)	76, 194, 199, 240
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	292
AseI	ATTAAT	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	2 cut(s)	39, 133
AsuII	TTCGAA	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	304
BcnI	CCSGG	2 cut(s)	39, 133
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	113
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	1 cut(s)	293
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	2 cut(s)	39, 133
BmgT120I	GGNCC	1 cut(s)	269
BmrFI	CCNGG	2 cut(s)	39, 133
BmsI	GCATC	1 cut(s)	32
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
Bpu1102I	GCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	2 cut(s)	39, 133
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseMII	CTCAG	2 cut(s)	138, 186
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	39, 132
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	127
Bsp119I	TTCGAA	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	142, 273
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	2 cut(s)	137, 187
BspMAI	CTGCAG	1 cut(s)	117
BspQI	GCTCTTC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	142, 273
Bst4CI	ACNGT	3 cut(s)	172, 326, 335
Bst6I	CTCTTC	1 cut(s)	184
BstAUI	TGTACA	1 cut(s)	246
BstBI	TTCGAA	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	124, 195
BstF5I	GGATG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	145, 276
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	2 cut(s)	142, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstSCI	CCNGG	2 cut(s)	37, 131
BstSFI	CTRYAG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	4 cut(s)	132, 266, 340, 424
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	63, 247
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	8 cut(s)	76, 110, 194, 199, 240, 270, 295, 413
CviKI_1	RGCY	8 cut(s)	76, 110, 194, 199, 240, 270, 295, 413
CviQI	GTAC	2 cut(s)	63, 247
DdeI	CTNAG	2 cut(s)	124, 195
DpnI	GATC	2 cut(s)	144, 275
DpnII	GATC	2 cut(s)	142, 273
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Ecl136II	GAGCTC	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	53, 400
EcoICRI	GAGCTC	1 cut(s)	199
EcoT22I	ATGCAT	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	1 cut(s)	109
FaiI	YATR	9 cut(s)	27, 29, 86, 107, 243, 285, 330, 357, 361
FatI	CATG	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	2 cut(s)	39, 132
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	2 cut(s)	39, 132
Hpy166II	GTNNAC	3 cut(s)	65, 247, 391
Hpy188I	TCNGA	2 cut(s)	72, 255
Hpy188III	TCNNGA	2 cut(s)	146, 166
Hpy8I	GTNNAC	3 cut(s)	65, 247, 391
HpyAV	CCTTC	3 cut(s)	112, 306, 424
HpyCH4III	ACNGT	3 cut(s)	172, 326, 335
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	5 cut(s)	25, 115, 230, 359, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	2 cut(s)	124, 195
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	142, 273
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	5 cut(s)	52, 145, 168, 187, 387
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	127, 419
MalI	GATC	2 cut(s)	144, 275
MboI	GATC	2 cut(s)	142, 273
MboII	GAAGA	4 cut(s)	201, 333, 336, 339
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	2 cut(s)	206, 220
MlyI	GAGTC	1 cut(s)	265
MnlI	CCTC	3 cut(s)	129, 310, 394
Mph1103I	ATGCAT	1 cut(s)	361
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	327
MspI	CCGG	2 cut(s)	39, 132
MspR9I	CCNGG	2 cut(s)	39, 133
MwoI	GCNNNNNNNGC	1 cut(s)	42
NciI	CCSGG	2 cut(s)	39, 133
NdeI	CATATG	1 cut(s)	27
NdeII	GATC	2 cut(s)	142, 273
NlaIII	CATG	1 cut(s)	109
NmuCI	GTSAC	2 cut(s)	127, 419
NsiI	ATGCAT	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PshBI	ATTAAT	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	201
Psp1406I	AACGTT	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	2 cut(s)	64, 248
RsaNI	GTAC	2 cut(s)	63, 247
RseI	CAYNNNNRTG	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	201
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	2 cut(s)	142, 273
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	265
ScrFI	CCNGG	2 cut(s)	39, 133
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	9 cut(s)	57, 78, 85, 96, 123, 196, 201, 242, 406
SfaNI	GCATC	1 cut(s)	32
SfcI	CTRYAG	1 cut(s)	113
SfuI	TTCGAA	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	206, 220
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	37, 131
TaaI	ACNGT	3 cut(s)	172, 326, 335
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	175
TasI	AATT	2 cut(s)	206, 220
TatI	WGTACW	2 cut(s)	62, 246
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	4 cut(s)	132, 266, 340, 424
TseFI	GTSAC	2 cut(s)	127, 419
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	2 cut(s)	127, 419
TspGWI	ACGGA	1 cut(s)	376
TspRI	CASTG	4 cut(s)	132, 266, 340, 424
VspI	ATTAAT	1 cut(s)	219
XbaI	TCTAGA	1 cut(s)	145
XspI	CTAG	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.