Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014335

Physical Location & Seq

Genomic Coordinates Forward (+)

10238595 .. 10239446

Gene Structure 852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G118600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACGACAGTAGAGATGAGAGTCCATATGGACTGCCCCGGATGTGAGAGCAAGGTTAGAAGTGCCCTTCAAAAGCTAAAAGGTGTGGACAACGTTGATATAGACATGGCCATGCAGAAGGTGACGATCACCGGATGGGCTGACCAGAAGAAGGTTCTCAAGACAGTCCGGAAGACTGGTCGTAGGGCGGAGCTGTGGCAGTTCCCCTACAGCGCAGACCACAATAACTTCAGTACAGATCAATATTATAATCAGCAGTGCAATGGCCCACTCAACAACTATGCACCTCAGCCTTCATCATGGTACAACTACTACAAGCATGGCTATGATGGCCCTTCTCATGGCTATTCTCAAAATCCTGCAAATTCCACACGTGCTTATGGCTATCAAACTACTGCTGCCTTTAGTGATGAGAACCCTCATGCTTGTTCTATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

147

Amino Acids

16.62

Weight (kDa)

8.31

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06330
fragaria_vesca	FvH4_6g27360 FvH4_6g27360
malus_domestica	MD09G1238100.v1.1
prunus_persica	Prupe.3G118600_v2.0.a1
pyrus_communis	pycom09g15660
rosa_chinensis	RchiOBHm_Chr2g0129621
rosa_laevigata	RLG00000019090
rosa_multiflora	Rmu_sc0011456.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114510
rosa_rugosa	Rorug02G0287500
rosa_samantha	Rh2AG339200 Rh2BG348000 Rh2CG326700 Rh2DG366200
rosa_wichuraiana	Rw2G027870 Rw2G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	168
AciI	CCGC	1 cut(s)	188
AclI	AACGTT	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	214
AcvI	CACGTG	1 cut(s)	374
AfaI	GTAC	2 cut(s)	235, 305
AfiI	CCNNNNNNNGG	2 cut(s)	151, 341
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	1 cut(s)	71
AluBI	AGCT	2 cut(s)	76, 193
AluI	AGCT	2 cut(s)	76, 193
Aor13HI	TCCGGA	1 cut(s)	168
AoxI	GGCC	3 cut(s)	108, 265, 331
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	2 cut(s)	266, 332
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	2 cut(s)	121, 133
BaeGI	GKGCMC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	110
BbrPI	CACGTG	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	179
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	2 cut(s)	129, 323
BcnI	CCSGG	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	266, 332
BmrFI	CCNGG	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	37
BsaWI	WCCGGW	2 cut(s)	131, 168
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 341
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	268
BseAI	TCCGGA	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	47, 140
BseLI	CCNNNNNNNGG	2 cut(s)	151, 341
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	385
BshFI	GGCC	3 cut(s)	110, 267, 333
BsiSI	CCGG	3 cut(s)	39, 132, 169
BslI	CCNNNNNNNGG	2 cut(s)	151, 341
BsnI	GGCC	3 cut(s)	110, 267, 333
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp13I	TCCGGA	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	126, 238
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	3 cut(s)	110, 267, 333
BspCNI	CTCAG	1 cut(s)	301
BspEI	TCCGGA	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	126, 238
Bst4CI	ACNGT	2 cut(s)	10, 166
BstBAI	YACGTR	1 cut(s)	374
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	2 cut(s)	47, 140
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	2 cut(s)	129, 241
BstMBI	GATC	2 cut(s)	126, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	385
BstV2I	GAAGAC	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	110, 267, 333
BtsCI	GGATG	2 cut(s)	47, 140
BtsI	GCAGTG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	263
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	266, 332
Csp6I	GTAC	2 cut(s)	234, 304
CviAII	CATG	6 cut(s)	106, 112, 300, 320, 341, 422
CviQI	GTAC	2 cut(s)	234, 304
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	128, 240
DpnII	GATC	2 cut(s)	126, 238
EaeI	YGGCCR	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	214
Eco72I	CACGTG	1 cut(s)	374
FaeI	CATG	6 cut(s)	109, 115, 303, 323, 344, 425
FatI	CATG	6 cut(s)	105, 111, 299, 319, 340, 421
FauNDI	CATATG	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	2 cut(s)	54, 147
Fsp4HI	GCNGC	1 cut(s)	399
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	399
HaeIII	GGCC	3 cut(s)	110, 267, 333
HapII	CCGG	3 cut(s)	39, 132, 169
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	6 cut(s)	109, 115, 303, 323, 344, 425
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	3 cut(s)	39, 132, 169
HphI	GGTGA	2 cut(s)	121, 133
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	160, 169
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	5 cut(s)	77, 112, 145, 303, 345
HpyCH4III	ACNGT	2 cut(s)	10, 166
HpyCH4IV	ACGT	2 cut(s)	93, 373
HpyCH4V	TGCA	4 cut(s)	115, 261, 284, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	2 cut(s)	93, 373
Hsp92II	CATG	6 cut(s)	109, 115, 303, 323, 344, 425
HspAI	GCGC	1 cut(s)	213
Kpn2I	TCCGGA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	126, 238
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	6 cut(s)	52, 145, 158, 162, 182, 372
Lsp1109I	GCAGC	1 cut(s)	385
MaeII	ACGT	2 cut(s)	93, 373
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	128, 240
MboI	GATC	2 cut(s)	126, 238
MboII	GAAGA	2 cut(s)	160, 184
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	110
MluCI	AATT	1 cut(s)	364
MluNI	TGGCCA	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	30
MnlI	CCTC	2 cut(s)	297, 429
Mox20I	TGGCCA	1 cut(s)	110
MroI	TCCGGA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	110
MslI	CAYNNNNRTG	2 cut(s)	110, 324
Msp20I	TGGCCA	1 cut(s)	110
MspI	CCGG	3 cut(s)	39, 132, 169
MspR9I	CCNGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	330
NciI	CCSGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	27
NdeII	GATC	2 cut(s)	126, 238
NlaIII	CATG	6 cut(s)	109, 115, 303, 323, 344, 425
NmuCI	GTSAC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	29
PmaCI	CACGTG	1 cut(s)	374
PmlI	CACGTG	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	29
Ppu21I	YACGTR	1 cut(s)	374
PsiI	TTATAA	1 cut(s)	249
Psp1406I	AACGTT	1 cut(s)	93
PspCI	CACGTG	1 cut(s)	374
PspPI	GGNCC	2 cut(s)	266, 332
RsaI	GTAC	2 cut(s)	235, 305
RsaNI	GTAC	2 cut(s)	234, 304
RseI	CAYNNNNRTG	2 cut(s)	110, 324
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	126, 238
Sau96I	GGNCC	2 cut(s)	266, 332
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	9 cut(s)	57, 78, 85, 96, 123, 156, 195, 289, 376
SfcI	CTRYAG	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	110, 324
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	188
SspI	AATATT	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	10, 166
TaiI	ACGT	2 cut(s)	96, 376
TasI	AATT	1 cut(s)	364
TatI	WGTACW	1 cut(s)	233
TscAI	CASTG	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	263
XapI	RAATTY	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.