Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014335

Physical Location & Seq

Genomic Coordinates Reverse (-)

46150434 .. 46150772

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019090

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCCCTGCAGAAGGTCACAGTGACCGGGTGGGCTGACCAAAAGAAAGTTCTCAAAACGGTTCGAAAAACTGGTCGAAGAGCGGAGCTCTGGCAATTCCCCTTTAATAATTCAAATTCAGACAACAGCTATGTATACAATCAGAGTCAGTGTAATGGCCCGATCAATAACTATGCGCCCCTGCCTTCCTCATCTTACAACTACTACAAGCATGGATATGACAGTGGTTCTTCTTCTAACTATGGCTATTCACAGAACCCTGCACATTCCTCCGCTTATGGGTATCAACCTACGACGGCCTTCAGTGACGAGAACCCTAATGCTTGTTCTGTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

113

Amino Acids

12.51

Weight (kDa)

8.87

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06330
fragaria_vesca	FvH4_6g27360 FvH4_6g27360
malus_domestica	MD09G1238100.v1.1
prunus_persica	Prupe.3G118600_v2.0.a1
pyrus_communis	pycom09g15660
rosa_chinensis	RchiOBHm_Chr2g0129621
rosa_laevigata	RLG00000019090
rosa_multiflora	Rmu_sc0011456.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114510
rosa_rugosa	Rorug02G0287500
rosa_samantha	Rh2AG339200 Rh2BG348000 Rh2CG326700 Rh2DG366200
rosa_wichuraiana	Rw2G027870 Rw2G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	2 cut(s)	83, 273
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	13, 279
AgsI	TTSAA	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	2 cut(s)	88, 129
AluI	AGCT	2 cut(s)	88, 129
Alw21I	GWGCWC	1 cut(s)	90
AoxI	GGCC	3 cut(s)	3, 157, 297
ApoI	RAATTY	1 cut(s)	115
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	4, 158
AsuC2I	CCSGG	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BceAI	ACGGC	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	28
BfmI	CTRYAG	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	4, 158
BmrFI	CCNGG	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
Bpu14I	TTCGAA	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 279
Bse1I	ACTGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	13, 279
BseNI	ACTGG	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	5, 159, 299
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	13, 279
BsnI	GGCC	3 cut(s)	5, 159, 299
Bsp119I	TTCGAA	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	2 cut(s)	83, 273
BspANI	GGCC	3 cut(s)	5, 159, 299
BspMAI	CTGCAG	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	162
BssNAI	GTATAC	1 cut(s)	136
Bst1107I	GTATAC	1 cut(s)	136
Bst4CI	ACNGT	3 cut(s)	22, 61, 224
Bst6I	CTCTTC	1 cut(s)	73
BstBI	TTCGAA	1 cut(s)	64
BstENI	CCTNNNNNAGG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	8
BstZ17I	GTATAC	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	5, 159, 299
BtsIMutI	CAGTG	4 cut(s)	27, 155, 229, 310
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	4, 158
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	7 cut(s)	5, 35, 88, 129, 159, 246, 299
CviKI_1	RGCY	7 cut(s)	5, 35, 88, 129, 159, 246, 299
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	1 cut(s)	215
FaiI	YATR	7 cut(s)	132, 136, 174, 213, 219, 243, 279
FatI	CATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	90
GlaI	GCGC	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	5, 159, 299
HapII	CCGG	1 cut(s)	27
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	2 cut(s)	121, 144
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	3 cut(s)	7, 195, 310
HpyCH4III	ACNGT	3 cut(s)	22, 61, 224
HpyCH4V	TGCA	2 cut(s)	10, 263
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	162
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	6 cut(s)	20, 40, 57, 76, 194, 273
MaeIII	GTNAC	3 cut(s)	16, 22, 305
MalI	GATC	1 cut(s)	164
MbiI	CCGCTC	1 cut(s)	83
MboI	GATC	1 cut(s)	162
MboII	GAAGA	3 cut(s)	90, 222, 225
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	3 cut(s)	95, 109, 115
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	2 cut(s)	199, 280
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	28
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	1 cut(s)	215
NmuCI	GTSAC	3 cut(s)	16, 22, 305
NspV	TTCGAA	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	90
PspPI	GGNCC	2 cut(s)	4, 158
PstI	CTGCAG	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	2 cut(s)	4, 158
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	4 cut(s)	18, 90, 131, 292
SfcI	CTRYAG	1 cut(s)	8
SfuI	TTCGAA	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	95, 109, 115
SsiI	CCGC	2 cut(s)	83, 273
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	3 cut(s)	22, 61, 224
TaqI	TCGA	2 cut(s)	64, 76
TasI	AATT	3 cut(s)	95, 109, 115
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	4 cut(s)	27, 155, 229, 310
TseFI	GTSAC	3 cut(s)	16, 22, 305
Tsp45I	GTSAC	3 cut(s)	16, 22, 305
TspRI	CASTG	4 cut(s)	27, 155, 229, 310
XagI	CCTNNNNNAGG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.