Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014335

Physical Location & Seq

Genomic Coordinates Forward (+)

40565661 .. 40566392

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACGACGATAGAGATGAGAGTGCATATGGACTGCCCCGGTTGCGAGAGCAAGGTTAGAAGTACACTTCAGAAGCTAAAAGGTATCGACAACGTTGAGATAGACATGGCTCTGCAGAAGGTCACAGTGACCGGGTGGGCAGACCAAAAGAAAGTTCTCAAGACGGTTCGAAAAACTGGTCGAAGAGCGGAGCTCTGGCAATTCCCCTTTAATAATTCAAATTCAGACAACAGCTATGTATACAATCAGAGTCAGTGTAATGGTCCGATTAATAACTATGCTCCCCAGCCTTCCTCATCTTACAACTACTACAAGCACGGATATGACAGTAGTCCTTCTTCTAACTATGGCTATTCTCAGAACCCTGCACATTCCTCCGTTTACGGATATCAACCTACGACGGCCTTCAGTGACGAAAACCCTAATGCTTGTTCTGTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

147

Amino Acids

16.56

Weight (kDa)

8.3

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	7 - 61	3.5e-15	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06330
fragaria_vesca	FvH4_6g27360 FvH4_6g27360
malus_domestica	MD09G1238100.v1.1
prunus_persica	Prupe.3G118600_v2.0.a1
pyrus_communis	pycom09g15660
rosa_chinensis	RchiOBHm_Chr2g0129621
rosa_laevigata	RLG00000019090
rosa_multiflora	Rmu_sc0011456.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114510
rosa_rugosa	Rorug02G0287500
rosa_samantha	Rh2AG339200 Rh2BG348000 Rh2CG326700 Rh2DG366200
rosa_wichuraiana	Rw2G027870 Rw2G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	1 cut(s)	188
AclI	AACGTT	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	2 cut(s)	53, 391
AfaI	GTAC	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	219
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	3 cut(s)	76, 193, 234
AluI	AGCT	3 cut(s)	76, 193, 234
Alw21I	GWGCWC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	402
ApoI	RAATTY	1 cut(s)	220
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AseI	ATTAAT	1 cut(s)	270
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	2 cut(s)	39, 133
AsuII	TTCGAA	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	322, 354
Bbv12I	GWGCWC	1 cut(s)	195
BceAI	ACGGC	1 cut(s)	417
BcnI	CCSGG	2 cut(s)	39, 133
BfmI	CTRYAG	1 cut(s)	113
Bme1390I	CCNGG	2 cut(s)	39, 133
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	2 cut(s)	39, 133
BoxI	GACNNNNGTC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	177, 209
Bpu14I	TTCGAA	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	39, 133
BsaJI	CCNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	39, 132
BsnI	GGCC	1 cut(s)	404
Bsp119I	TTCGAA	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	117
BspQI	GCTCTTC	1 cut(s)	178
BspT104I	TTCGAA	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	37
BssNAI	GTATAC	1 cut(s)	241
Bst1107I	GTATAC	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	127, 166, 329
Bst6I	CTCTTC	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	357
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstPAI	GACNNNNGTC	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	37, 131
BstSFI	CTRYAG	1 cut(s)	113
BstZ17I	GTATAC	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	404
BtsIMutI	CAGTG	3 cut(s)	132, 260, 415
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	7 cut(s)	76, 110, 193, 234, 289, 351, 404
CviKI_1	RGCY	7 cut(s)	76, 110, 193, 234, 289, 351, 404
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco32I	GATATC	1 cut(s)	389
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	53, 391
EcoICRI	GAGCTC	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	1 cut(s)	109
FaiI	YATR	8 cut(s)	27, 29, 107, 237, 241, 279, 324, 348
FatI	CATG	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	240
FriOI	GRGCYC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	2 cut(s)	39, 132
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	2 cut(s)	39, 132
Hpy166II	GTNNAC	3 cut(s)	65, 241, 382
Hpy188I	TCNGA	5 cut(s)	72, 226, 249, 267, 360
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	3 cut(s)	65, 241, 382
Hpy99I	CGWCG	2 cut(s)	10, 403
HpyAV	CCTTC	4 cut(s)	112, 300, 345, 415
HpyCH4III	ACNGT	3 cut(s)	127, 166, 329
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	25, 115, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	357
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	109
LguI	GCTCTTC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	190, 286
LpnPI	CCDG	6 cut(s)	52, 145, 162, 181, 299, 378
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	3 cut(s)	121, 127, 410
MbiI	CCGCTC	1 cut(s)	188
MboII	GAAGA	2 cut(s)	195, 330
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	3 cut(s)	200, 214, 220
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	2 cut(s)	304, 385
MseI	TTAA	2 cut(s)	210, 270
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	2 cut(s)	39, 132
MspR9I	CCNGG	2 cut(s)	39, 133
MwoI	GCNNNNNNNGC	1 cut(s)	42
NciI	CCSGG	2 cut(s)	39, 133
NdeI	CATATG	1 cut(s)	27
NlaIII	CATG	1 cut(s)	109
NmuCI	GTSAC	3 cut(s)	121, 127, 410
NspV	TTCGAA	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PshAI	GACNNNNGTC	1 cut(s)	330
PshBI	ATTAAT	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	321
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	210, 270
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	39, 133
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	8 cut(s)	57, 78, 85, 96, 123, 195, 236, 397
SfcI	CTRYAG	1 cut(s)	113
SfuI	TTCGAA	1 cut(s)	169
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	3 cut(s)	200, 214, 220
SsiI	CCGC	1 cut(s)	188
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	37, 131
TaaI	ACNGT	3 cut(s)	127, 166, 329
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	87, 169, 181
TasI	AATT	3 cut(s)	200, 214, 220
TatI	WGTACW	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	210, 270
Tru9I	TTAA	2 cut(s)	210, 270
TscAI	CASTG	3 cut(s)	132, 260, 415
TseFI	GTSAC	3 cut(s)	121, 127, 410
Tsp45I	GTSAC	3 cut(s)	121, 127, 410
TspGWI	ACGGA	3 cut(s)	333, 367, 399
TspRI	CASTG	3 cut(s)	132, 260, 415
VpaK11BI	GGWCC	1 cut(s)	263
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.