pycom09g15660

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0014335
Physical Location & Seq
Forward (+)
15732660 .. 15734091
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15660.1

Sequence Viewer

Length: 441 bp
ATGACGACGACGATAGAGATTAGTGTTCACATCGATTGCCCGGGGTGTGAGAGCAAGGTTAGAAATGCACTGCAAAAGCTAAAAGGTGTGGACAACGTTGAAATAGACATGGCCATGCAAAAGGTGACGATAACTGGATGGACTGACCAGAAGAAGGTTCTGAGGACAGTCCGGAAGACTGGCCGGAGGGCTGAGCTGTGGCAGCAACCCCCTTTTGATTCAGAATACAACTTCGATACAGACCAATATTACAGTCAACAACTATGTAATGGCTCTGCACCTCAGCCTTCCTCATCTTACAACTACTACAAGCATGGTTACGACGGTCCTTCGAATTATCATGCTTATTATTCTCAGAATTCTGCAAATTCCAGTTCTTATGGATATCAAACCACTGCGGCCTTTAGCGATGAGAACCCTCATGCTTGTTCTATGATGTGA

Protein Analysis

147

Amino Acids

16.57

Weight (kDa)

6.04

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 9 - 62 4.3e-15 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06330
fragaria_vesca FvH4_6g27360 FvH4_6g27360
malus_domestica MD09G1238100.v1.1
prunus_persica Prupe.3G118600_v2.0.a1
pyrus_communis pycom09g15660
rosa_chinensis RchiOBHm_Chr2g0129621
rosa_laevigata RLG00000019090
rosa_multiflora Rmu_sc0011456.1_g000002
rosa_roxburghii Rroxscaffold_2G00114510
rosa_rugosa Rorug02G0287500
rosa_samantha Rh2AG339200 Rh2BG348000 Rh2CG326700 Rh2DG366200
rosa_wichuraiana Rw2G027870 Rw2G028010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 171
AciI CCGC 1 cut(s) 398
AclI AACGTT 1 cut(s) 96
AcoI YGGCCR 2 cut(s) 111, 181
AcsI RAATTY 2 cut(s) 358, 367
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 2 cut(s) 79, 196
AluI AGCT 2 cut(s) 79, 196
Ama87I CYCGRG 1 cut(s) 40
Aor13HI TCCGGA 1 cut(s) 171
AoxI GGCC 3 cut(s) 111, 181, 399
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 2 cut(s) 358, 367
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 2 cut(s) 41, 42
AsuHPI GGTGA 1 cut(s) 136
AsuII TTCGAA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 1 cut(s) 326
BalI TGGCCA 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 214
BccI CCATC 1 cut(s) 132
BcnI CCSGG 2 cut(s) 41, 42
BisI GCNGC 2 cut(s) 203, 399
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 2 cut(s) 204, 400
Bme1390I CCNGG 2 cut(s) 41, 42
Bme18I GGWCC 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 326
BmrFI CCNGG 2 cut(s) 41, 42
BpiI GAAGAC 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 282
Bpu1102I GCTNAGC 1 cut(s) 192
Bpu14I TTCGAA 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 41, 42
Bsa29I ATCGAT 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 40, 41
BsaWI WCCGGW 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 3 cut(s) 139, 184, 372
BseAI TCCGGA 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 40, 41
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 4 cut(s) 152, 183, 296, 368
BseNI ACTGG 3 cut(s) 139, 184, 372
BseXI GCAGC 1 cut(s) 214
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 3 cut(s) 113, 183, 401
BshVI ATCGAT 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 3 cut(s) 41, 172, 184
BslI CCNNNNNNNGG 1 cut(s) 154
BsnI GGCC 3 cut(s) 113, 183, 401
BsoBI CYCGRG 1 cut(s) 40
Bsp119I TTCGAA 1 cut(s) 332
Bsp13I TCCGGA 1 cut(s) 171
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 1 cut(s) 398
BspANI GGCC 3 cut(s) 113, 183, 401
BspCNI CTCAG 4 cut(s) 153, 184, 295, 367
BspDI ATCGAT 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 332
BsrI ACTGG 3 cut(s) 139, 184, 372
BssECI CCNNGG 2 cut(s) 40, 41
Bst4CI ACNGT 3 cut(s) 169, 254, 326
BstBI TTCGAA 1 cut(s) 332
BstDEI CTNAG 4 cut(s) 161, 192, 282, 354
BstF5I GGATG 1 cut(s) 143
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstSCI CCNGG 2 cut(s) 39, 40
BstV1I GCAGC 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 182
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 3 cut(s) 113, 183, 401
BsuTUI ATCGAT 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 1 cut(s) 143
BtsI GCAGTG 2 cut(s) 68, 393
BtsIMutI CAGTG 2 cut(s) 68, 393
Cfr13I GGNCC 1 cut(s) 326
Cfr9I CCCGGG 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 33
CviAII CATG 5 cut(s) 109, 115, 314, 341, 422
CviJI RGCY 8 cut(s) 79, 113, 183, 191, 196, 273, 286, 401
CviKI_1 RGCY 8 cut(s) 79, 113, 183, 191, 196, 273, 286, 401
DdeI CTNAG 4 cut(s) 161, 192, 282, 354
EaeI YGGCCR 2 cut(s) 111, 181
Eco32I GATATC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 358
EcoRV GATATC 1 cut(s) 386
FaeI CATG 5 cut(s) 112, 118, 317, 344, 425
FaiI YATR 8 cut(s) 110, 116, 265, 315, 342, 381, 423, 434
FatI CATG 5 cut(s) 108, 114, 313, 340, 421
Fnu4HI GCNGC 2 cut(s) 203, 399
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 203, 399
GluI GCNGC 2 cut(s) 203, 399
HaeIII GGCC 3 cut(s) 113, 183, 401
HapII CCGG 3 cut(s) 41, 172, 184
Hin1II CATG 5 cut(s) 112, 118, 317, 344, 425
HincII GTYRAC 1 cut(s) 257
HindII GTYRAC 1 cut(s) 257
HinfI GANTC 1 cut(s) 218
HpaII CCGG 3 cut(s) 41, 172, 184
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 3 cut(s) 28, 91, 257
Hpy188I TCNGA 3 cut(s) 162, 223, 357
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 3 cut(s) 28, 91, 257
Hpy99I CGWCG 3 cut(s) 10, 13, 326
HpyAV CCTTC 3 cut(s) 148, 297, 339
HpyCH4III ACNGT 3 cut(s) 169, 254, 326
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 5 cut(s) 68, 73, 118, 278, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 4 cut(s) 161, 192, 282, 354
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 5 cut(s) 112, 118, 317, 344, 425
Kpn2I TCCGGA 1 cut(s) 171
LpnPI CCDG 7 cut(s) 54, 120, 161, 165, 185, 197, 385
Lsp1109I GCAGC 1 cut(s) 214
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 124, 317
MboII GAAGA 2 cut(s) 163, 187
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 3 cut(s) 334, 358, 367
MluNI TGGCCA 1 cut(s) 113
MnlI CCTC 5 cut(s) 156, 180, 291, 301, 429
Mox20I TGGCCA 1 cut(s) 113
MroI TCCGGA 1 cut(s) 171
MscI TGGCCA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 113
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 3 cut(s) 41, 172, 184
MspR9I CCNGG 2 cut(s) 41, 42
MwoI GCNNNNNNNGC 1 cut(s) 202
NciI CCSGG 2 cut(s) 41, 42
NlaIII CATG 5 cut(s) 112, 118, 317, 344, 425
NmuCI GTSAC 1 cut(s) 124
NspV TTCGAA 1 cut(s) 332
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 204, 400
Psp1406I AACGTT 1 cut(s) 96
PspPI GGNCC 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 113
SatI GCNGC 2 cut(s) 203, 399
Sau96I GGNCC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 41, 42
SetI ASST 8 cut(s) 60, 81, 88, 99, 126, 159, 198, 283
SfuI TTCGAA 1 cut(s) 332
SinI GGWCC 1 cut(s) 326
SmaI CCCGGG 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 3 cut(s) 334, 358, 367
SsiI CCGC 1 cut(s) 398
SspI AATATT 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 39, 40
TaaI ACNGT 3 cut(s) 169, 254, 326
TaiI ACGT 1 cut(s) 99
TaqI TCGA 3 cut(s) 33, 234, 332
TasI AATT 3 cut(s) 334, 358, 367
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 1 cut(s) 218
TscAI CASTG 2 cut(s) 75, 400
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 124
TspMI CCCGGG 1 cut(s) 40
TspRI CASTG 2 cut(s) 75, 400
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 2 cut(s) 358, 367
XmaI CCCGGG 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.