Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014335

Physical Location & Seq

Genomic Coordinates Reverse (-)

51629095 .. 51630168

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG366200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTCTGCAGAAGGTCACAGTGACCGGGTGGGCAGACCAAAAGAAAGTTCTCAAGACGGTTCGAAAAACTGGTCGAAGAGCGGAGCTCTGGCAATTCCCCTTTAATAATTCAAATTCAGACAACAGCTATGTATACAATCAGAGTCAGTGTAATGGTCCGATTAATAACTATGCTCCCCAGCCTTCCTCATATTACAACTACTACAAGCACGGATATGACAGTGGTCCTTCTTCTAACTATGGCTATTCTCAGAACCCTGCACATTCCTCCGTTTACGGGTATCAACCTACGACGGCCTTCAGTGACGAAAACCCTAATGCTTGTTCTGTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

112

Amino Acids

12.64

Weight (kDa)

8.85

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06330
fragaria_vesca	FvH4_6g27360 FvH4_6g27360
malus_domestica	MD09G1238100.v1.1
prunus_persica	Prupe.3G118600_v2.0.a1
pyrus_communis	pycom09g15660
rosa_chinensis	RchiOBHm_Chr2g0129621
rosa_laevigata	RLG00000019090
rosa_multiflora	Rmu_sc0011456.1_g000002
rosa_roxburghii	Rroxscaffold_2G00114510
rosa_rugosa	Rorug02G0287500
rosa_samantha	Rh2AG339200 Rh2BG348000 Rh2CG326700 Rh2DG366200
rosa_wichuraiana	Rw2G027870 Rw2G028010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	83
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	2 cut(s)	88, 129
AluI	AGCT	2 cut(s)	88, 129
Alw21I	GWGCWC	1 cut(s)	90
AoxI	GGCC	1 cut(s)	297
ApoI	RAATTY	1 cut(s)	115
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AseI	ATTAAT	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	158, 227
AsuC2I	CCSGG	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	158, 227
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BceAI	ACGGC	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	28
BfmI	CTRYAG	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	2 cut(s)	158, 227
BmgT120I	GGNCC	2 cut(s)	158, 227
BmrFI	CCNGG	1 cut(s)	28
BoxI	GACNNNNGTC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
Bpu14I	TTCGAA	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	180
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	279
BsnI	GGCC	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	90
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	76
BssNAI	GTATAC	1 cut(s)	136
Bst1107I	GTATAC	1 cut(s)	136
Bst4CI	ACNGT	3 cut(s)	22, 61, 224
Bst6I	CTCTTC	1 cut(s)	73
BstBI	TTCGAA	1 cut(s)	64
BstDEI	CTNAG	1 cut(s)	252
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	8
BstZ17I	GTATAC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	299
BtsIMutI	CAGTG	4 cut(s)	27, 155, 229, 310
Cfr13I	GGNCC	2 cut(s)	158, 227
CviJI	RGCY	6 cut(s)	5, 88, 129, 184, 246, 299
CviKI_1	RGCY	6 cut(s)	5, 88, 129, 184, 246, 299
DdeI	CTNAG	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	2 cut(s)	158, 227
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	90
FaiI	YATR	6 cut(s)	132, 136, 174, 193, 219, 243
FblI	GTMKAC	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	27
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	27
Hpy166II	GTNNAC	2 cut(s)	136, 277
Hpy188I	TCNGA	4 cut(s)	121, 144, 162, 255
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	2 cut(s)	136, 277
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	4 cut(s)	7, 195, 240, 310
HpyCH4III	ACNGT	3 cut(s)	22, 61, 224
HpyCH4V	TGCA	2 cut(s)	10, 263
HpyF3I	CTNAG	1 cut(s)	252
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	85, 181
LpnPI	CCDG	5 cut(s)	40, 57, 76, 194, 273
MaeIII	GTNAC	3 cut(s)	16, 22, 305
MbiI	CCGCTC	1 cut(s)	83
MboII	GAAGA	2 cut(s)	90, 225
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	3 cut(s)	95, 109, 115
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	2 cut(s)	199, 280
MseI	TTAA	2 cut(s)	105, 165
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	28
NciI	CCSGG	1 cut(s)	28
NmuCI	GTSAC	3 cut(s)	16, 22, 305
NspV	TTCGAA	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PshAI	GACNNNNGTC	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	180
PspPI	GGNCC	2 cut(s)	158, 227
PstI	CTGCAG	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	216
SacI	GAGCTC	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	105, 165
Sau96I	GGNCC	2 cut(s)	158, 227
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	4 cut(s)	18, 90, 131, 292
SfcI	CTRYAG	1 cut(s)	8
SfuI	TTCGAA	1 cut(s)	64
SinI	GGWCC	2 cut(s)	158, 227
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	95, 109, 115
SsiI	CCGC	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	3 cut(s)	22, 61, 224
TaqI	TCGA	2 cut(s)	64, 76
TasI	AATT	3 cut(s)	95, 109, 115
Tru1I	TTAA	2 cut(s)	105, 165
Tru9I	TTAA	2 cut(s)	105, 165
TscAI	CASTG	4 cut(s)	27, 155, 229, 310
TseFI	GTSAC	3 cut(s)	16, 22, 305
Tsp45I	GTSAC	3 cut(s)	16, 22, 305
TspGWI	ACGGA	2 cut(s)	228, 262
TspRI	CASTG	4 cut(s)	27, 155, 229, 310
VpaK11BI	GGWCC	2 cut(s)	158, 227
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.