AT1G07060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013406
Physical Location & Seq
Reverse (-)
2166348 .. 2168397
2050 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G07060.3

Sequence Viewer

Length: 702 bp
ATGCGCCATAACATAAAATTCAAATCAAAGGGCACATTGAAAATTCGAAACACCGCTCAAATTTCTCTCTGGAAAAAATGTTCAGATTCGATGATCGCTGATCAGACTTATCTCTTTATCAATCGGGTCCAAGACAGAAGGTTCGATGAAGAATCTCTTCGGATTCTCGAGTTGTCTCTGGTTGCAATGAATGTGAAATCGTTTTTGGAAGTTAGATCTCGATTGAGAGATTTCATGAGATCTGAATCGGTTGTTATATTCGGTGAGCTCACCGGAGAATCCATGGTCGCAAAACTCTCCGTACTTGAATTCTTCGCTCGTGCTTTTGCTCTTCTCGGTGATATGGAGAGTTGTTTGGCTATGAGGTATGAGGCATTGAATTTGCGGCAGCTCAAGTCTCCTAGCTGTTTGTGGTTAGGGGTTTCACATTCAGAATGGACCAAATTTGCAGTCCAATCTATGGAAAATGGATTCCCTTCCATTGCAGGAAAGGCGTCTGAAAATGCCCTGTTGAGCCTTAAGAAGGATAGTCTTATTGAACCAAAATCAGAAGATAATTCTGACATTTTGGATGCTGCTGAGAAAGTAAGGAGACTAAGGGATTCAGCTGCCTCGTTAACATCTTCACATTCAGGTATTTTCATTTATATCGTGTCTTCTTTAAAGTTTGCTGTTTGTAACAGACTTCTGACTACATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.4

Weight (kDa)

9.19

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07060 AT1G07060 AT1G07060 AT1G07060
fragaria_vesca FvH4_3g39530
malus_domestica MD11G1063300.v1.1
prunus_persica Prupe.6G050500_v2.0.a1
pyrus_communis pycom11g05300
rosa_chinensis RchiOBHm_Chr5g0071301
rosa_laevigata RLG00000036200
rosa_multiflora Rmu_sc0006990.1_g000010
rosa_roxburghii Rroxscaffold_1G00009840
rosa_rugosa Rorug05G0411200
rosa_samantha Rh5AG467500 Rh5BG486000 Rh5CG510400 Rh5DG497200
rosa_wichuraiana Rw5G043430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 460
AccBSI CCGCTC 1 cut(s) 56
AciI CCGC 2 cut(s) 54, 385
AcsI RAATTY 6 cut(s) 17, 42, 60, 308, 379, 443
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 2 cut(s) 460, 523
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 5 cut(s) 22, 40, 308, 379, 539
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AloI GAACNNNNNNTCC 2 cut(s) 64, 96
AluBI AGCT 4 cut(s) 268, 391, 405, 608
AluI AGCT 4 cut(s) 268, 391, 405, 608
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 3 cut(s) 180, 402, 586
Ama87I CYCGRG 1 cut(s) 167
ApeKI GCWGC 3 cut(s) 388, 575, 608
ApoI RAATTY 6 cut(s) 17, 42, 60, 308, 379, 443
ArsI GACNNNNNNTTYG 4 cut(s) 125, 157, 435, 467
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 127, 438
AsuHPI GGTGA 3 cut(s) 262, 275, 350
AsuII TTCGAA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 127, 438
BaeGI GKGCMC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 270
BauI CACGAG 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 400, 562, 595
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 3 cut(s) 180, 402, 586
BfaI CTAG 1 cut(s) 402
BfrI CTTAAG 1 cut(s) 518
BglII AGATCT 2 cut(s) 215, 239
BisI GCNGC 4 cut(s) 386, 389, 576, 609
BlsI GCNGC 4 cut(s) 387, 390, 577, 610
Bme18I GGWCC 2 cut(s) 127, 438
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 127, 438
BmiI GGNNCC 1 cut(s) 128
BmsI GCATC 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 648
Bpu14I TTCGAA 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 377
BsaBI GATNNNNATC 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 282
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 523
Bse3DI GCAATG 2 cut(s) 192, 480
Bse8I GATNNNNATC 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 577
BseJI GATNNNNATC 1 cut(s) 244
BseLI CCNNNNNNNGG 2 cut(s) 460, 523
BseMI GCAATG 2 cut(s) 192, 480
BseMII CTCAG 1 cut(s) 570
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 3 cut(s) 400, 562, 595
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 460, 523
BsmAI GTCTC 3 cut(s) 180, 402, 586
BsoBI CYCGRG 1 cut(s) 167
Bsp119I TTCGAA 1 cut(s) 46
Bsp1286I GDGCHC 2 cut(s) 35, 270
Bsp143I GATC 4 cut(s) 93, 100, 215, 239
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 2 cut(s) 54, 385
BspCNI CTCAG 1 cut(s) 571
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 128
BspQI GCTCTTC 1 cut(s) 336
BspT104I TTCGAA 1 cut(s) 46
BspTI CTTAAG 1 cut(s) 518
BsrBI CCGCTC 1 cut(s) 56
BsrDI GCAATG 2 cut(s) 192, 480
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 4 cut(s) 93, 100, 215, 239
BssNI GRCGYC 1 cut(s) 494
BssSI CACGAG 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 318
Bst6I CTCTTC 2 cut(s) 162, 336
BstACI GRCGYC 1 cut(s) 494
BstAFI CTTAAG 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 579, 596
BstDSI CCRYGG 1 cut(s) 282
BstENI CCTNNNNNAGG 1 cut(s) 521
BstF5I GGATG 1 cut(s) 577
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 4 cut(s) 96, 103, 218, 242
BstMAI GTCTC 3 cut(s) 180, 402, 586
BstMBI GATC 4 cut(s) 93, 100, 215, 239
BstMWI GCNNNNNNNGC 1 cut(s) 491
BstSLI GKGCMC 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 400, 562, 595
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 2 cut(s) 215, 239
BstYI RGATCY 2 cut(s) 215, 239
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 1 cut(s) 577
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 127, 438
CseI GACGC 1 cut(s) 483
Csp6I GTAC 1 cut(s) 302
CviAII CATG 2 cut(s) 235, 283
CviJI RGCY 6 cut(s) 268, 359, 391, 405, 516, 608
CviKI_1 RGCY 6 cut(s) 268, 359, 391, 405, 516, 608
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 2 cut(s) 579, 596
DpnI GATC 4 cut(s) 95, 102, 217, 241
DpnII GATC 4 cut(s) 93, 100, 215, 239
DraI TTTAAA 1 cut(s) 663
Eam1104I CTCTTC 2 cut(s) 162, 336
EarI CTCTTC 2 cut(s) 162, 336
Ecl136II GAGCTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 127, 438
Eco53kI GAGCTC 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 167
EcoICRI GAGCTC 1 cut(s) 268
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoRI GAATTC 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 238, 286
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FatI CATG 2 cut(s) 234, 282
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 4 cut(s) 386, 389, 576, 609
FokI GGATG 1 cut(s) 584
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 4 cut(s) 386, 389, 576, 609
FspBI CTAG 1 cut(s) 402
GlaI GCGC 1 cut(s) 5
GluI GCNGC 4 cut(s) 386, 389, 576, 609
HapII CCGG 1 cut(s) 273
HgaI GACGC 1 cut(s) 483
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 2 cut(s) 238, 286
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HinfI GANTC 7 cut(s) 86, 152, 163, 245, 278, 471, 602
HpaI GTTAAC 1 cut(s) 618
HpaII CCGG 1 cut(s) 273
HphI GGTGA 3 cut(s) 262, 275, 350
Hpy166II GTNNAC 1 cut(s) 618
Hpy188I TCNGA 9 cut(s) 85, 105, 162, 244, 433, 499, 550, 562, 690
Hpy188III TCNNGA 4 cut(s) 70, 167, 219, 235
Hpy8I GTNNAC 1 cut(s) 618
HpyAV CCTTC 3 cut(s) 132, 486, 517
HpyCH4V TGCA 3 cut(s) 185, 449, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 491
HpyF3I CTNAG 2 cut(s) 579, 596
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 2 cut(s) 238, 286
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 100
KspAI GTTAAC 1 cut(s) 618
Kzo9I GATC 4 cut(s) 93, 100, 215, 239
LguI GCTCTTC 1 cut(s) 336
LpnPI CCDG 6 cut(s) 55, 164, 286, 471, 521, 618
Lsp1109I GCAGC 3 cut(s) 400, 562, 595
LweI GCATC 1 cut(s) 562
MaeI CTAG 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 677
MalI GATC 4 cut(s) 95, 102, 217, 241
MbiI CCGCTC 1 cut(s) 56
MboI GATC 4 cut(s) 93, 100, 215, 239
MboII GAAGA 7 cut(s) 149, 161, 304, 323, 563, 615, 648
MflI RGATCY 2 cut(s) 215, 239
MhlI GDGCHC 2 cut(s) 35, 270
MluCI AATT 7 cut(s) 17, 42, 60, 308, 379, 443, 556
MnlI CCTC 3 cut(s) 357, 364, 622
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 3 cut(s) 519, 617, 662
MspA1I CMGCKG 1 cut(s) 608
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 491
NcoI CCATGG 1 cut(s) 282
NdeII GATC 4 cut(s) 93, 100, 215, 239
NlaIII CATG 2 cut(s) 238, 286
NlaIV GGNNCC 1 cut(s) 128
NspV TTCGAA 1 cut(s) 46
PaeR7I CTCGAG 1 cut(s) 167
PagI TCATGA 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 7 cut(s) 86, 152, 163, 245, 278, 471, 602
PflMI CCANNNNNTGG 1 cut(s) 460
PkrI GCNGC 4 cut(s) 387, 390, 577, 610
Psp124BI GAGCTC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 2 cut(s) 127, 438
PsuI RGATCY 2 cut(s) 215, 239
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SacI GAGCTC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 3 cut(s) 519, 617, 662
SatI GCNGC 4 cut(s) 386, 389, 576, 609
Sau3AI GATC 4 cut(s) 93, 100, 215, 239
Sau96I GGNCC 2 cut(s) 127, 438
SduI GDGCHC 2 cut(s) 35, 270
SetI ASST 7 cut(s) 143, 270, 368, 393, 407, 610, 637
SfaNI GCATC 1 cut(s) 562
Sfr274I CTCGAG 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 46
SinI GGWCC 2 cut(s) 127, 438
SlaI CTCGAG 1 cut(s) 167
SmlI CTYRAG 3 cut(s) 167, 392, 518
SmoI CTYRAG 3 cut(s) 167, 392, 518
Sse9I AATT 7 cut(s) 17, 42, 60, 308, 379, 443, 556
SsiI CCGC 2 cut(s) 54, 385
SspMI CTAG 1 cut(s) 402
SstI GAGCTC 1 cut(s) 270
StyI CCWWGG 1 cut(s) 282
TaqI TCGA 5 cut(s) 46, 89, 144, 168, 220
TasI AATT 7 cut(s) 17, 42, 60, 308, 379, 443, 556
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 7 cut(s) 86, 152, 163, 245, 278, 471, 602
Tru1I TTAA 3 cut(s) 519, 617, 662
Tru9I TTAA 3 cut(s) 519, 617, 662
TseI GCWGC 3 cut(s) 388, 575, 608
TspDTI ATGAA 4 cut(s) 162, 203, 223, 631
TspGWI ACGGA 1 cut(s) 289
Van91I CCANNNNNTGG 1 cut(s) 460
Vha464I CTTAAG 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 127, 438
XagI CCTNNNNNAGG 1 cut(s) 521
XapI RAATTY 6 cut(s) 17, 42, 60, 308, 379, 443
XhoI CTCGAG 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.