FvH4_3g39530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013406
Physical Location & Seq
Forward (+)
33602657 .. 33605595
2939 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39530.t1

Sequence Viewer

Length: 750 bp
ATGTCAGAGCCGTTTCGTTCACTCGTTTTGAACAGAAGATTCGGCGATGAGACTCTTCGCGTTCTGGAATCGATTCTGGTTTCCAAGGACGTCAAATCCTCCATGGAAGTCCGATCCGGCTTGATGCAGTTCATGAGGTCCGAATCCCTCTCCGTTCTCCGAGAAATCTCTGAGAAAAACGTCGCGGAGAAGCTTCTCGTTCTCGAATTTCTCGTTCGCACTTTCGCGCTCGTCGGCGATGTTGAGAGTTGCTTGGCTTTGAGATATGAGGCTTTGGTTTTGCGAGATCTCAAGTCTACAGCTCAACAATGGCTAAAGGTGCCACATCTGGAATGGCTCAACTTTGCTCAGCAATTACTGGACAACGGTTTCTATTCGATTGGGGCAAAGGCTTGTGAAAATGCATTGAGATCCCTTAAGGGGAAGTCTTCTGAACAGTCTACAGCAGATGGAGTTCACCTCGAGAGGATATCTACTGAATACCCAAAAACAGATGAAGTCTTGGAAAATGAGCAAGTTATGGAAAAGATAAAGAGACTCAAAGAATGTGCCATGTCATCTGCTTCTTCTCACTCAGTTCAAACGCAGACGGCAGACTACATGAAAAAGAGACTAAAACAGAAGAGTATGGTGAGCTCTCCAGTTCTCAAGAAGACAACATGTGTAGCGAGCACTTTGTTCAGAAATGGAATCAAAATGCAAAATCAACGAAAACTGAATGAAAGCAGAAGCTTATTGGGGTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

28.23

Weight (kDa)

9.31

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07060 AT1G07060 AT1G07060 AT1G07060
fragaria_vesca FvH4_3g39530
malus_domestica MD11G1063300.v1.1
prunus_persica Prupe.6G050500_v2.0.a1
pyrus_communis pycom11g05300
rosa_chinensis RchiOBHm_Chr5g0071301
rosa_laevigata RLG00000036200
rosa_multiflora Rmu_sc0006990.1_g000010
rosa_roxburghii Rroxscaffold_1G00009840
rosa_rugosa Rorug05G0411200
rosa_samantha Rh5AG467500 Rh5BG486000 Rh5CG510400 Rh5DG497200
rosa_wichuraiana Rw5G043430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccB1I GGYRCC 1 cut(s) 319
AccI GTMKAC 2 cut(s) 296, 440
AccII CGCG 3 cut(s) 60, 185, 227
AciI CCGC 1 cut(s) 185
AclWI GGATC 2 cut(s) 108, 405
AcsI RAATTY 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 420
AflII CTTAAG 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 659
AgsI TTSAA 2 cut(s) 31, 581
AluBI AGCT 4 cut(s) 193, 302, 636, 732
AluI AGCT 4 cut(s) 193, 302, 636, 732
Alw21I GWGCWC 2 cut(s) 638, 674
Alw26I GTCTC 3 cut(s) 44, 529, 604
AlwI GGATC 2 cut(s) 108, 405
Ama87I CYCGRG 1 cut(s) 461
ApoI RAATTY 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 72
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 449, 643
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 638
BbsI GAAGAC 2 cut(s) 420, 659
Bbv12I GWGCWC 2 cut(s) 638, 674
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 606
BcoDI GTCTC 3 cut(s) 44, 529, 604
BfmI CTRYAG 2 cut(s) 297, 441
BfrI CTTAAG 1 cut(s) 416
BglII AGATCT 1 cut(s) 286
BlpI GCTNAGC 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 321
BmsI GCATC 1 cut(s) 114
BpiI GAAGAC 2 cut(s) 420, 659
BplI GAGNNNNNCTC 2 cut(s) 444, 476
BpmI CTGGAG 1 cut(s) 624
Bpu1102I GCTNAGC 1 cut(s) 348
BpuEI CTTGAG 2 cut(s) 275, 632
Bsa29I ATCGAT 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 84, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse1I ACTGG 2 cut(s) 363, 641
BseCI ATCGAT 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 84, 102
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMII CTCAG 3 cut(s) 162, 362, 588
BseNI ACTGG 2 cut(s) 363, 641
Bsh1236I CGCG 3 cut(s) 60, 185, 227
BshNI GGYRCC 1 cut(s) 319
BshVI ATCGAT 1 cut(s) 71
BsiHKAI GWGCWC 2 cut(s) 638, 674
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 3 cut(s) 44, 529, 604
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 638, 674
Bsp143I GATC 3 cut(s) 113, 286, 410
Bsp1720I GCTNAGC 1 cut(s) 348
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 1 cut(s) 185
BspCNI CTCAG 3 cut(s) 163, 361, 587
BspDI ATCGAT 1 cut(s) 71
BspFNI CGCG 3 cut(s) 60, 185, 227
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 2 cut(s) 108, 405
BspT107I GGYRCC 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 416
BsrI ACTGG 2 cut(s) 363, 641
BssECI CCNNGG 2 cut(s) 84, 102
BssMI GATC 3 cut(s) 113, 286, 410
BssNI GRCGYC 1 cut(s) 90
BssT1I CCWWGG 2 cut(s) 84, 102
Bst4CI ACNGT 2 cut(s) 368, 438
Bst6I CTCTTC 2 cut(s) 60, 617
BstACI GRCGYC 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 670
BstDEI CTNAG 3 cut(s) 171, 348, 574
BstDSI CCRYGG 1 cut(s) 102
BstFNI CGCG 3 cut(s) 60, 185, 227
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 3 cut(s) 116, 289, 413
BstMAI GTCTC 3 cut(s) 44, 529, 604
BstMBI GATC 3 cut(s) 113, 286, 410
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstNSI RCATGY 1 cut(s) 663
BstSFI CTRYAG 2 cut(s) 297, 441
BstUI CGCG 3 cut(s) 60, 185, 227
BstV2I GAAGAC 2 cut(s) 420, 659
BstX2I RGATCY 2 cut(s) 286, 410
BstYI RGATCY 2 cut(s) 286, 410
Bsu15I ATCGAT 1 cut(s) 71
BsuTUI ATCGAT 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 2 cut(s) 60, 252
Cac8I GCNNGC 1 cut(s) 670
CciI TCATGA 1 cut(s) 132
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 138
ClaI ATCGAT 1 cut(s) 71
CviAII CATG 5 cut(s) 103, 133, 553, 601, 660
DdeI CTNAG 3 cut(s) 171, 348, 574
DpnI GATC 3 cut(s) 115, 288, 412
DpnII GATC 3 cut(s) 113, 286, 410
Eam1104I CTCTTC 2 cut(s) 60, 617
EarI CTCTTC 2 cut(s) 60, 617
Ecl136II GAGCTC 1 cut(s) 636
Eco130I CCWWGG 2 cut(s) 84, 102
Eco24I GRGCYC 1 cut(s) 638
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 636
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 2 cut(s) 84, 102
EcoT22I ATGCAT 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 638
ErhI CCWWGG 2 cut(s) 84, 102
FaeI CATG 5 cut(s) 106, 136, 556, 604, 663
FaiI YATR 8 cut(s) 104, 134, 267, 521, 554, 602, 629, 661
FatI CATG 5 cut(s) 102, 132, 552, 600, 659
FblI GTMKAC 2 cut(s) 296, 440
FriOI GRGCYC 1 cut(s) 638
GlaI GCGC 1 cut(s) 228
GsuI CTGGAG 1 cut(s) 624
HapII CCGG 1 cut(s) 117
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 5 cut(s) 106, 136, 556, 604, 663
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HindIII AAGCTT 2 cut(s) 191, 730
HinfI GANTC 7 cut(s) 39, 52, 68, 73, 143, 537, 690
HpaII CCGG 1 cut(s) 117
HphI GGTGA 2 cut(s) 449, 643
Hpy166II GTNNAC 4 cut(s) 20, 297, 441, 457
Hpy188I TCNGA 7 cut(s) 7, 113, 142, 161, 172, 433, 683
Hpy188III TCNNGA 6 cut(s) 65, 133, 203, 329, 463, 649
Hpy8I GTNNAC 4 cut(s) 20, 297, 441, 457
Hpy99I CGWCG 2 cut(s) 185, 236
HpyCH4III ACNGT 2 cut(s) 368, 438
HpyCH4IV ACGT 2 cut(s) 90, 180
HpyCH4V TGCA 3 cut(s) 127, 404, 700
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpyF3I CTNAG 3 cut(s) 171, 348, 574
HpySE526I ACGT 2 cut(s) 90, 180
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 5 cut(s) 106, 136, 556, 604, 663
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 3 cut(s) 113, 286, 410
LpnPI CCDG 6 cut(s) 50, 62, 130, 314, 344, 654
LweI GCATC 1 cut(s) 114
MaeII ACGT 2 cut(s) 90, 180
MalI GATC 3 cut(s) 115, 288, 412
MboI GATC 3 cut(s) 113, 286, 410
MboII GAAGA 6 cut(s) 47, 48, 420, 558, 634, 664
MflI RGATCY 2 cut(s) 286, 410
MhlI GDGCHC 2 cut(s) 638, 674
MluCI AATT 2 cut(s) 206, 353
MlyI GAGTC 2 cut(s) 46, 531
MnlI CCTC 6 cut(s) 109, 129, 158, 262, 459, 470
Mph1103I ATGCAT 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 1 cut(s) 417
MspCI CTTAAG 1 cut(s) 416
MspI CCGG 1 cut(s) 117
MvnI CGCG 3 cut(s) 60, 185, 227
MwoI GCNNNNNNNGC 1 cut(s) 319
NcoI CCATGG 1 cut(s) 102
NdeII GATC 3 cut(s) 113, 286, 410
NlaIII CATG 5 cut(s) 106, 136, 556, 604, 663
NlaIV GGNNCC 1 cut(s) 321
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 1 cut(s) 663
PaeR7I CTCGAG 1 cut(s) 461
PagI TCATGA 1 cut(s) 132
PciI ACATGT 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 5 cut(s) 39, 68, 73, 143, 690
PleI GAGTC 2 cut(s) 46, 531
PpsI GAGTC 2 cut(s) 46, 531
PscI ACATGT 1 cut(s) 659
Psp124BI GAGCTC 1 cut(s) 638
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 138
PsuI RGATCY 2 cut(s) 286, 410
SacI GAGCTC 1 cut(s) 638
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 3 cut(s) 113, 286, 410
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 2 cut(s) 46, 531
SduI GDGCHC 2 cut(s) 638, 674
SetI ASST 9 cut(s) 93, 140, 183, 195, 304, 321, 462, 638, 734
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 2 cut(s) 297, 441
Sfr274I CTCGAG 1 cut(s) 461
SinI GGWCC 1 cut(s) 138
SlaI CTCGAG 1 cut(s) 461
SmlI CTYRAG 4 cut(s) 290, 416, 461, 647
SmoI CTYRAG 4 cut(s) 290, 416, 461, 647
Sse9I AATT 2 cut(s) 206, 353
SsiI CCGC 1 cut(s) 185
SstI GAGCTC 1 cut(s) 638
StyI CCWWGG 2 cut(s) 84, 102
TaaI ACNGT 2 cut(s) 368, 438
TaiI ACGT 2 cut(s) 93, 183
TaqI TCGA 4 cut(s) 71, 204, 377, 462
TasI AATT 2 cut(s) 206, 353
TfiI GAWTC 5 cut(s) 39, 68, 73, 143, 690
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TspDTI ATGAA 4 cut(s) 121, 510, 617, 735
TspGWI ACGGA 1 cut(s) 142
Vha464I CTTAAG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 1 cut(s) 206
XceI RCATGY 1 cut(s) 663
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XhoI CTCGAG 1 cut(s) 461
XmiI GTMKAC 2 cut(s) 296, 440
XmnI GAANNNNTTC 1 cut(s) 72
ZraI GACGTC 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.