Rroxscaffold_1G00009840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013406
Physical Location & Seq
Reverse (-)
12338325 .. 12340865
2541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009840.1

Sequence Viewer

Length: 618 bp
ATGAGATCTGAATCCCTCTCCATTCTGAGAGAAATTTCTGAGAAAAACGTGGAGGAGAAGCTTCTGGTGCTCGAATTTCTCGTACGCACTTTCGCTCTCGTCGGCGATGTTGAGAGTTGCTTGGCTTTGAGATATGAGGCTTTGCTTTTGCGAGATCTCAAGTCTAGAACTCACCAATGGCTAGAGGTGCCATATCTGGAATGGCAGAACTTTGCTCAGCAGTCACTGGACAATGGTTTCTATTCAATTGCGGCAAAGGCTTGTGAAAATGCATTGTTATCCCTTAAGGGGAAGTCTGCTGAACAGCCTACACCAGATGGAGTTTGCATTGAGAGGATATCTACTGAAGACCCCAAAACAGATGAAGTCTTTGAAACTGAACAAGTTATTCAAAAGATAAAGAAACTGAAGGAATGTGCCATGGCATCTGCTTCTTCCCATTCAGTTCAAACGCAAACGGCAGACTACATGAAAAAGAGACTAAAACAGAAGAGTATGGTGTGCTCTCCAGTTCTCAAGAAGACAACATGTGTAGCGAGCACTTTGTTCAGAAATGGAATCAAAAAGCGGAATCAGCGAAAATTGAATGAAAGCAGAAGCTTATTGGGGTGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.33

Weight (kDa)

8.98

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07060 AT1G07060 AT1G07060 AT1G07060
fragaria_vesca FvH4_3g39530
malus_domestica MD11G1063300.v1.1
prunus_persica Prupe.6G050500_v2.0.a1
pyrus_communis pycom11g05300
rosa_chinensis RchiOBHm_Chr5g0071301
rosa_laevigata RLG00000036200
rosa_multiflora Rmu_sc0006990.1_g000010
rosa_roxburghii Rroxscaffold_1G00009840
rosa_rugosa Rorug05G0411200
rosa_samantha Rh5AG467500 Rh5BG486000 Rh5CG510400 Rh5DG497200
rosa_wichuraiana Rw5G043430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AciI CCGC 2 cut(s) 251, 568
AcsI RAATTY 2 cut(s) 33, 74
AcuI CTGAAG 2 cut(s) 366, 428
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 288
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 527
AgsI TTSAA 5 cut(s) 246, 374, 392, 449, 586
AluBI AGCT 2 cut(s) 61, 600
AluI AGCT 2 cut(s) 61, 600
Alw21I GWGCWC 3 cut(s) 72, 506, 542
Alw26I GTCTC 1 cut(s) 472
AlwNI CAGNNNCTG 1 cut(s) 226
ApoI RAATTY 2 cut(s) 33, 74
AsuHPI GGTGA 1 cut(s) 164
BanI GGYRCC 1 cut(s) 187
BbsI GAAGAC 2 cut(s) 354, 527
Bbv12I GWGCWC 3 cut(s) 72, 506, 542
BccI CCATC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 472
BfaI CTAG 2 cut(s) 165, 182
BfrI CTTAAG 1 cut(s) 284
BglII AGATCT 2 cut(s) 5, 154
BisI GCNGC 1 cut(s) 252
BlpI GCTNAGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 1 cut(s) 434
BpiI GAAGAC 2 cut(s) 354, 527
BpmI CTGGAG 1 cut(s) 492
Bpu1102I GCTNAGC 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 143, 500
BsaBI GATNNNNATC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse1I ACTGG 2 cut(s) 231, 509
Bse8I GATNNNNATC 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 420
BseJI GATNNNNATC 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMII CTCAG 3 cut(s) 17, 30, 230
BseNI ACTGG 2 cut(s) 231, 509
BseRI GAGGAG 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 187
BsiHKAI GWGCWC 3 cut(s) 72, 506, 542
BsiWI CGTACG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 472
Bsp1286I GDGCHC 3 cut(s) 72, 506, 542
Bsp143I GATC 2 cut(s) 5, 154
Bsp1720I GCTNAGC 1 cut(s) 216
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 2 cut(s) 251, 568
BspCNI CTCAG 3 cut(s) 18, 31, 229
BspLI GGNNCC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 187
BspTI CTTAAG 1 cut(s) 284
BsrI ACTGG 2 cut(s) 231, 509
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 2 cut(s) 5, 154
BssT1I CCWWGG 1 cut(s) 420
Bst6I CTCTTC 1 cut(s) 485
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 538
BstDEI CTNAG 3 cut(s) 26, 39, 216
BstDSI CCRYGG 1 cut(s) 420
BstKTI GATC 2 cut(s) 8, 157
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 2 cut(s) 5, 154
BstMWI GCNNNNNNNGC 4 cut(s) 67, 187, 257, 574
BstNSI RCATGY 1 cut(s) 531
BstV2I GAAGAC 2 cut(s) 354, 527
BstX2I RGATCY 2 cut(s) 5, 154
BstYI RGATCY 2 cut(s) 5, 154
BtgI CCRYGG 1 cut(s) 420
BtgZI GCGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 538
CaiI CAGNNNCTG 1 cut(s) 226
Csp6I GTAC 1 cut(s) 83
CviAII CATG 3 cut(s) 421, 469, 528
CviJI RGCY 7 cut(s) 61, 125, 140, 181, 260, 307, 600
CviKI_1 RGCY 7 cut(s) 61, 125, 140, 181, 260, 307, 600
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 3 cut(s) 26, 39, 216
DpnI GATC 2 cut(s) 7, 156
DpnII GATC 2 cut(s) 5, 154
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 420
Eco32I GATATC 1 cut(s) 339
Eco57I CTGAAG 2 cut(s) 366, 428
EcoRV GATATC 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 3 cut(s) 424, 472, 531
FaiI YATR 6 cut(s) 135, 193, 422, 470, 497, 529
FatI CATG 3 cut(s) 420, 468, 527
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 2 cut(s) 165, 182
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 492
Hin1II CATG 3 cut(s) 424, 472, 531
HindIII AAGCTT 2 cut(s) 59, 598
HinfI GANTC 3 cut(s) 11, 558, 571
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 4 cut(s) 10, 27, 40, 551
Hpy188III TCNNGA 3 cut(s) 165, 197, 517
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 403
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 272, 327
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 187, 257, 574
HpyF3I CTNAG 3 cut(s) 26, 39, 216
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 3 cut(s) 424, 472, 531
Kzo9I GATC 2 cut(s) 5, 154
LpnPI CCDG 5 cut(s) 50, 182, 212, 327, 522
LweI GCATC 1 cut(s) 434
MaeI CTAG 2 cut(s) 165, 182
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 222
MalI GATC 2 cut(s) 7, 156
MboI GATC 2 cut(s) 5, 154
MboII GAAGA 4 cut(s) 359, 426, 502, 532
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 2 cut(s) 5, 154
MhlI GDGCHC 3 cut(s) 72, 506, 542
MluCI AATT 4 cut(s) 33, 74, 246, 581
MnlI CCTC 5 cut(s) 26, 46, 130, 178, 327
Mph1103I ATGCAT 1 cut(s) 274
MseI TTAA 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 284
MunI CAATTG 1 cut(s) 246
MwoI GCNNNNNNNGC 4 cut(s) 67, 187, 257, 574
NcoI CCATGG 1 cut(s) 420
NdeII GATC 2 cut(s) 5, 154
NlaIII CATG 3 cut(s) 424, 472, 531
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 222
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 1 cut(s) 531
PciI ACATGT 1 cut(s) 527
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 3 cut(s) 11, 558, 571
Pfl23II CGTACG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 253
PscI ACATGT 1 cut(s) 527
PspLI CGTACG 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 2 cut(s) 5, 154
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 2 cut(s) 5, 154
SduI GDGCHC 3 cut(s) 72, 506, 542
SetI ASST 4 cut(s) 51, 63, 189, 602
SfaNI GCATC 1 cut(s) 434
SmlI CTYRAG 3 cut(s) 158, 284, 515
SmoI CTYRAG 3 cut(s) 158, 284, 515
Sse9I AATT 4 cut(s) 33, 74, 246, 581
SsiI CCGC 2 cut(s) 251, 568
SspMI CTAG 2 cut(s) 165, 182
StyI CCWWGG 1 cut(s) 420
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 72
TasI AATT 4 cut(s) 33, 74, 246, 581
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 3 cut(s) 11, 558, 571
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 3 cut(s) 378, 485, 603
TspRI CASTG 1 cut(s) 231
Vha464I CTTAAG 1 cut(s) 284
XapI RAATTY 2 cut(s) 33, 74
XbaI TCTAGA 1 cut(s) 164
XceI RCATGY 1 cut(s) 531
XcmI CCANNNNNNNNNTGG 1 cut(s) 198
XspI CTAG 2 cut(s) 165, 182
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.