Rh5DG497200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013406
Physical Location & Seq
Forward (+)
78072208 .. 78074507
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG497200.1

Sequence Viewer

Length: 750 bp
ATGTCAGAGCCGTTTCGTTCACTCGTTTTGAACAGAAGATTTGGCTATGAGACTCTTCGCGTTCTGGAATTAATTTTGGTTTCCAAGGACGTGAAGTCGTCGGTGGAAGTCCAATCCGGCTTGAGGCAGTTCATGAGATCTGAATCCCTCTCCGTTCTGAAAGAAATTTCTGAGAAAAAAGTCGAGGAGAAGCTTCTGGTGCTCGAATTTCTCGTTCGCACTTTCGCGCTCGTCGGCGATGTTGAGAGTTGCTTGGCTTTGAGATATGAGGCTTTGCTTTTGCGAGATCTCAAGTCTAGAACTCACCAATGGCTAGAGGTACCATATCTGGAATGGCTGAACTTTGCTCAGCAGTCACTGGACAATGGTTTCTATTCAATTGCAGCAAAGGCTTGTGAAAATGCATTGTTATCCCTTAAGGGGAAGTCTGCTGAACAGCCTACACCAGATGGAGTTTGCATTGAGAGGATATCTACTGAAGACCCCAAAACAGATGAAGTCTTTGAAACTGAACAAGTTATTCAAAACATAAAGAAACTCAAGGAATGTGCCATGGCATCTGCTTCTTCCCACTCAGTTCAAACGCAAACGGCAGACTACATGAAAAAGAGACTAAAACAGAAGAGTATGGTGTGCTCTCCAGTTGTCAAGAAGACAACATGTGTAGCGAGCACTTTGTTCAGAAATGGAATAAAAAAGCGGAATCAGCGAAAATTGAATGAAAGCAGAAGCTTATTGGGGTGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.37

Weight (kDa)

9.15

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07060 AT1G07060 AT1G07060 AT1G07060
fragaria_vesca FvH4_3g39530
malus_domestica MD11G1063300.v1.1
prunus_persica Prupe.6G050500_v2.0.a1
pyrus_communis pycom11g05300
rosa_chinensis RchiOBHm_Chr5g0071301
rosa_laevigata RLG00000036200
rosa_multiflora Rmu_sc0006990.1_g000010
rosa_roxburghii Rroxscaffold_1G00009840
rosa_rugosa Rorug05G0411200
rosa_samantha Rh5AG467500 Rh5BG486000 Rh5CG510400 Rh5DG497200
rosa_wichuraiana Rw5G043430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 319
AccII CGCG 2 cut(s) 60, 227
AciI CCGC 1 cut(s) 700
AcsI RAATTY 2 cut(s) 165, 206
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 123, 420
AflII CTTAAG 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 659
AgsI TTSAA 6 cut(s) 31, 378, 506, 524, 581, 718
AhdI GACNNNNNGTC 1 cut(s) 94
AjiI CACGTC 1 cut(s) 91
AluBI AGCT 2 cut(s) 193, 732
AluI AGCT 2 cut(s) 193, 732
Alw21I GWGCWC 3 cut(s) 204, 638, 674
Alw26I GTCTC 2 cut(s) 44, 604
AlwNI CAGNNNCTG 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 2 cut(s) 165, 206
AseI ATTAAT 1 cut(s) 71
Asp718I GGTACC 1 cut(s) 319
AspLEI GCGC 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 319
BbsI GAAGAC 2 cut(s) 486, 659
Bbv12I GWGCWC 3 cut(s) 204, 638, 674
BbvI GCAGC 1 cut(s) 395
BccI CCATC 1 cut(s) 443
BceAI ACGGC 1 cut(s) 606
BcoDI GTCTC 2 cut(s) 44, 604
BfaI CTAG 2 cut(s) 297, 314
BfrI CTTAAG 1 cut(s) 416
BglII AGATCT 2 cut(s) 137, 286
BisI GCNGC 1 cut(s) 384
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 385
BmeRI GACNNNNNGTC 1 cut(s) 94
BmgBI CACGTC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 321
BmsI GCATC 1 cut(s) 566
BpiI GAAGAC 2 cut(s) 486, 659
BpmI CTGGAG 1 cut(s) 624
Bpu1102I GCTNAGC 1 cut(s) 348
BpuEI CTTGAG 3 cut(s) 142, 275, 524
BsaBI GATNNNNATC 1 cut(s) 142
BsaJI CCNNGG 2 cut(s) 84, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 420
Bse1I ACTGG 2 cut(s) 363, 641
Bse8I GATNNNNATC 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 84, 552
BseJI GATNNNNATC 1 cut(s) 142
BseLI CCNNNNNNNGG 2 cut(s) 123, 420
BseMII CTCAG 3 cut(s) 162, 362, 588
BseNI ACTGG 2 cut(s) 363, 641
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 395
Bsh1236I CGCG 2 cut(s) 60, 227
BshNI GGYRCC 1 cut(s) 319
BsiHKAI GWGCWC 3 cut(s) 204, 638, 674
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 123, 420
BsmAI GTCTC 2 cut(s) 44, 604
Bsp1286I GDGCHC 3 cut(s) 204, 638, 674
Bsp143I GATC 2 cut(s) 137, 286
Bsp1720I GCTNAGC 1 cut(s) 348
Bsp19I CCATGG 1 cut(s) 552
BspACI CCGC 1 cut(s) 700
BspCNI CTCAG 3 cut(s) 163, 361, 587
BspFNI CGCG 2 cut(s) 60, 227
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 416
BsrI ACTGG 2 cut(s) 363, 641
BssECI CCNNGG 2 cut(s) 84, 552
BssMI GATC 2 cut(s) 137, 286
BssT1I CCWWGG 2 cut(s) 84, 552
Bst6I CTCTTC 2 cut(s) 60, 617
BstAFI CTTAAG 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 670
BstDEI CTNAG 3 cut(s) 171, 348, 574
BstDSI CCRYGG 1 cut(s) 552
BstFNI CGCG 2 cut(s) 60, 227
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 2 cut(s) 140, 289
BstMAI GTCTC 2 cut(s) 44, 604
BstMBI GATC 2 cut(s) 137, 286
BstMWI GCNNNNNNNGC 3 cut(s) 199, 389, 706
BstNSI RCATGY 1 cut(s) 663
BstUI CGCG 2 cut(s) 60, 227
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 2 cut(s) 486, 659
BstX2I RGATCY 2 cut(s) 137, 286
BstYI RGATCY 2 cut(s) 137, 286
BtgI CCRYGG 1 cut(s) 552
BtgZI GCGATG 1 cut(s) 252
BtrI CACGTC 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 670
CaiI CAGNNNCTG 1 cut(s) 358
CciI TCATGA 1 cut(s) 132
CfoI GCGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 320
CviAII CATG 4 cut(s) 133, 553, 601, 660
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 3 cut(s) 171, 348, 574
DpnI GATC 2 cut(s) 139, 288
DpnII GATC 2 cut(s) 137, 286
DriI GACNNNNNGTC 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 60, 617
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 2 cut(s) 60, 617
Eco130I CCWWGG 2 cut(s) 84, 552
Eco32I GATATC 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 498
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 2 cut(s) 84, 552
EcoT22I ATGCAT 1 cut(s) 406
ErhI CCWWGG 2 cut(s) 84, 552
FaeI CATG 4 cut(s) 136, 556, 604, 663
FaiI YATR 9 cut(s) 48, 134, 267, 325, 530, 554, 602, 629, 661
FatI CATG 4 cut(s) 132, 552, 600, 659
Fnu4HI GCNGC 1 cut(s) 384
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 2 cut(s) 297, 314
GlaI GCGC 1 cut(s) 228
GluI GCNGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 624
HapII CCGG 1 cut(s) 117
HhaI GCGC 1 cut(s) 229
Hin1II CATG 4 cut(s) 136, 556, 604, 663
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HindIII AAGCTT 2 cut(s) 191, 730
HinfI GANTC 3 cut(s) 52, 143, 703
HpaII CCGG 1 cut(s) 117
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 5 cut(s) 7, 142, 159, 172, 683
Hpy188III TCNNGA 5 cut(s) 65, 133, 297, 329, 649
Hpy8I GTNNAC 1 cut(s) 20
Hpy99I CGWCG 2 cut(s) 103, 236
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 383, 404, 459
HpyF10VI GCNNNNNNNGC 3 cut(s) 199, 389, 706
HpyF3I CTNAG 3 cut(s) 171, 348, 574
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 4 cut(s) 136, 556, 604, 663
HspAI GCGC 1 cut(s) 227
KpnI GGTACC 1 cut(s) 323
Kzo9I GATC 2 cut(s) 137, 286
LpnPI CCDG 7 cut(s) 50, 130, 182, 314, 344, 459, 654
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 1 cut(s) 566
MaeI CTAG 2 cut(s) 297, 314
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 354
MalI GATC 2 cut(s) 139, 288
MboI GATC 2 cut(s) 137, 286
MboII GAAGA 6 cut(s) 47, 48, 491, 558, 634, 664
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 2 cut(s) 137, 286
MhlI GDGCHC 3 cut(s) 204, 638, 674
MluCI AATT 6 cut(s) 68, 72, 165, 206, 378, 713
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 6 cut(s) 117, 158, 178, 262, 310, 459
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 2 cut(s) 71, 417
MspCI CTTAAG 1 cut(s) 416
MspI CCGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 378
MvnI CGCG 2 cut(s) 60, 227
MwoI GCNNNNNNNGC 3 cut(s) 199, 389, 706
NcoI CCATGG 1 cut(s) 552
NdeII GATC 2 cut(s) 137, 286
NlaIII CATG 4 cut(s) 136, 556, 604, 663
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 1 cut(s) 663
PagI TCATGA 1 cut(s) 132
PciI ACATGT 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 2 cut(s) 143, 703
PkrI GCNGC 1 cut(s) 385
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PscI ACATGT 1 cut(s) 659
PshBI ATTAAT 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 321
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 2 cut(s) 137, 286
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
SaqAI TTAA 2 cut(s) 71, 417
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 2 cut(s) 137, 286
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 3 cut(s) 204, 638, 674
SetI ASST 4 cut(s) 93, 195, 321, 734
SfaNI GCATC 1 cut(s) 566
SmlI CTYRAG 4 cut(s) 121, 290, 416, 539
SmoI CTYRAG 4 cut(s) 121, 290, 416, 539
Sse9I AATT 6 cut(s) 68, 72, 165, 206, 378, 713
SsiI CCGC 1 cut(s) 700
SspMI CTAG 2 cut(s) 297, 314
StyI CCWWGG 2 cut(s) 84, 552
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 183, 204
TasI AATT 6 cut(s) 68, 72, 165, 206, 378, 713
TfiI GAWTC 2 cut(s) 143, 703
Tru1I TTAA 2 cut(s) 71, 417
Tru9I TTAA 2 cut(s) 71, 417
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 1 cut(s) 354
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 354
TspDTI ATGAA 4 cut(s) 121, 510, 617, 735
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 363
Vha464I CTTAAG 1 cut(s) 416
VspI ATTAAT 1 cut(s) 71
XapI RAATTY 2 cut(s) 165, 206
XbaI TCTAGA 1 cut(s) 296
XceI RCATGY 1 cut(s) 663
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XspI CTAG 2 cut(s) 297, 314
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.