MD11G1063300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013406
Physical Location & Seq
Reverse (-)
5487786 .. 5490447
2662 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1063300.v1.1.491

Sequence Viewer

Length: 897 bp
ATGGCCCATCTTATTTTTATAAACCCTACTCAAAGTGGAATTCAGAGACCATTTTGCCGCCCAAATGTCAGAGATCTTTCGCTCACTCGTCTTGAACAGAAGGTCCATTTCTGCTTCTTCTCCAATCTTCCACCCTCTCTCTCTCTGGTATTGAAAATATTGAGCTTTTTCAGGTTCGATGACGTGACGCTACGAGTATTGGAATCGGCATTGGTTTCGAAGGACGTAAAGTCGTCGATAGAAGTCAGGTCCGGCTTCAGGCAGTTCATGAGGTCGGAATCGCTCTCCGTTCTGCGAGAAACTGCAGAGAAAAATGCGGAAGAGAAGCTTCTTGTTCTCGAGTTTCTTGTTCGCGCTTTTGCACTAGTAGGCGATGTTGAGAGTTGTTTGGCTTTGAGATATGAGGCATTGCTTTTGCGGGACATCAAATCTTCGACGAATCCATGGCTACAAGTTTCTTATACGGAATGGCTGAATTTTGCTCACCAGTCAAGAGATAGTGGTTTCTATTCAGTTGCAGGAAAGGCATGTGAACATGCATTGGATTGCATTAAGAGGAAATCTACTGAAGACCGTAAAACAGATGAAGTTAACGTTATGAAGAAATCTACTGAAGACCTAAAAACAGATGAAGTCCTTGAAAGTGTGCAAGCAATTGAAAAGATAAAGAGACTCAAGGATTGTGCCATGGCATCTGCTTCTTCCCACTCTGTTCAAGCGCAGACGGCAGACTACTTGAAAAAGAGACTAAAGGAGAAGAGCACGGAGCGTCCCTTAGATTTCAAGGAGCCAAAATGTGTTGTAGCAAGCACTTTGTTCCGAAATGGAATCAGAAGGCGGAATCTACGAAAATTGAACACGAGTCGAAGCTTGCTGGGGATGACTAATGAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

34.08

Weight (kDa)

9.35

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07060 AT1G07060 AT1G07060 AT1G07060
fragaria_vesca FvH4_3g39530
malus_domestica MD11G1063300.v1.1
prunus_persica Prupe.6G050500_v2.0.a1
pyrus_communis pycom11g05300
rosa_chinensis RchiOBHm_Chr5g0071301
rosa_laevigata RLG00000036200
rosa_multiflora Rmu_sc0006990.1_g000010
rosa_roxburghii Rroxscaffold_1G00009840
rosa_rugosa Rorug05G0411200
rosa_samantha Rh5AG467500 Rh5BG486000 Rh5CG510400 Rh5DG497200
rosa_wichuraiana Rw5G043430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 20
AccII CGCG 1 cut(s) 354
AciI CCGC 4 cut(s) 58, 317, 418, 838
AclI AACGTT 1 cut(s) 594
AcsI RAATTY 2 cut(s) 39, 475
AcuI CTGAAG 3 cut(s) 241, 588, 633
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 8 cut(s) 95, 154, 641, 659, 716, 739, 784, 856
AhdI GACNNNNNGTC 1 cut(s) 229
AhlI ACTAGT 1 cut(s) 364
AjiI CACGTC 1 cut(s) 184
AloI GAACNNNNNNTCC 2 cut(s) 87, 119
AluBI AGCT 3 cut(s) 165, 328, 870
AluI AGCT 3 cut(s) 165, 328, 870
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 3 cut(s) 40, 664, 739
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 39, 475
AspLEI GCGC 2 cut(s) 356, 721
AspS9I GGNCC 3 cut(s) 4, 103, 249
AsuHPI GGTGA 1 cut(s) 476
AsuII TTCGAA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 2 cut(s) 103, 249
BauI CACGAG 1 cut(s) 859
BbsI GAAGAC 2 cut(s) 576, 621
Bbv12I GWGCWC 1 cut(s) 764
BccI CCATC 1 cut(s) 15
BceAI ACGGC 1 cut(s) 741
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcoDI GTCTC 3 cut(s) 40, 664, 739
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 303
BglII AGATCT 1 cut(s) 73
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bme18I GGWCC 2 cut(s) 103, 249
BmeRI GACNNNNNGTC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 338
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 3 cut(s) 4, 103, 249
BmiI GGNNCC 1 cut(s) 789
BmsI GCATC 1 cut(s) 701
BpiI GAAGAC 2 cut(s) 576, 621
Bpu14I TTCGAA 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 659
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 443, 687
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 487
Bse3DI GCAATG 1 cut(s) 407
BseDI CCNNGG 2 cut(s) 443, 687
BseGI GGATG 1 cut(s) 885
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 487
BseYI CCCAGC 1 cut(s) 874
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 764
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 2 cut(s) 434, 756
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 3 cut(s) 40, 664, 739
BsmFI GGGAC 2 cut(s) 434, 756
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 40
BsoBI CYCGRG 1 cut(s) 338
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 764
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 2 cut(s) 443, 687
BspACI CCGC 4 cut(s) 58, 317, 418, 838
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 354
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 789
BspMAI CTGCAG 1 cut(s) 307
BspQI GCTCTTC 1 cut(s) 752
BspT104I TTCGAA 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 407
BsrI ACTGG 1 cut(s) 487
BssECI CCNNGG 2 cut(s) 443, 687
BssMI GATC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 859
BssT1I CCWWGG 2 cut(s) 443, 687
Bst2BI CACGAG 1 cut(s) 859
Bst4CI ACNGT 1 cut(s) 575
Bst6I CTCTTC 2 cut(s) 315, 752
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 651, 808, 872
BstDEI CTNAG 1 cut(s) 775
BstDSI CCRYGG 2 cut(s) 443, 687
BstF5I GGATG 1 cut(s) 885
BstFNI CGCG 1 cut(s) 354
BstHHI GCGC 2 cut(s) 356, 721
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 3 cut(s) 40, 664, 739
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 524, 725
BstNSI RCATGY 2 cut(s) 531, 539
BstSFI CTRYAG 1 cut(s) 303
BstUI CGCG 1 cut(s) 354
BstV2I GAAGAC 2 cut(s) 576, 621
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 443, 687
BtgZI GCGATG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 885
Cac8I GCNNGC 3 cut(s) 651, 808, 872
CciI TCATGA 1 cut(s) 267
CfoI GCGC 2 cut(s) 356, 721
Cfr13I GGNCC 3 cut(s) 4, 103, 249
CseI GACGC 2 cut(s) 196, 758
CviAII CATG 5 cut(s) 268, 444, 528, 536, 688
CviJI RGCY 9 cut(s) 5, 165, 255, 328, 392, 448, 472, 790, 870
CviKI_1 RGCY 9 cut(s) 5, 165, 255, 328, 392, 448, 472, 790, 870
DdeI CTNAG 1 cut(s) 775
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DriI GACNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 315, 752
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 2 cut(s) 315, 752
EciI GGCGGA 1 cut(s) 853
Eco130I CCWWGG 2 cut(s) 443, 687
Eco31I GGTCTC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 103, 249
Eco57I CTGAAG 3 cut(s) 241, 588, 633
Eco88I CYCGRG 1 cut(s) 338
EcoRI GAATTC 1 cut(s) 39
EcoT14I CCWWGG 2 cut(s) 443, 687
EcoT22I ATGCAT 1 cut(s) 541
ErhI CCWWGG 2 cut(s) 443, 687
FaeI CATG 5 cut(s) 271, 447, 531, 539, 691
FaiI YATR 9 cut(s) 20, 269, 402, 445, 462, 529, 537, 599, 689
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 2 cut(s) 434, 756
FatI CATG 5 cut(s) 267, 443, 527, 535, 687
FauI CCCGC 1 cut(s) 411
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 892
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 1 cut(s) 365
GlaI GCGC 2 cut(s) 355, 720
GluI GCNGC 1 cut(s) 58
GsaI CCCAGC 1 cut(s) 878
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 252
HgaI GACGC 2 cut(s) 196, 758
HhaI GCGC 2 cut(s) 356, 721
Hin1II CATG 5 cut(s) 271, 447, 531, 539, 691
Hin6I GCGC 2 cut(s) 354, 719
HinP1I GCGC 2 cut(s) 354, 719
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HindIII AAGCTT 2 cut(s) 326, 868
HinfI GANTC 8 cut(s) 203, 278, 439, 672, 828, 841, 862, 890
HpaI GTTAAC 1 cut(s) 592
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 2 cut(s) 533, 592
Hpy188I TCNGA 5 cut(s) 45, 71, 277, 821, 833
Hpy188III TCNNGA 4 cut(s) 92, 268, 338, 492
Hpy8I GTNNAC 2 cut(s) 533, 592
Hpy99I CGWCG 2 cut(s) 238, 439
HpyAV CCTTC 3 cut(s) 94, 214, 828
HpyCH4III ACNGT 1 cut(s) 575
HpyCH4IV ACGT 3 cut(s) 183, 225, 594
HpyCH4V TGCA 6 cut(s) 305, 362, 518, 539, 549, 649
HpyF10VI GCNNNNNNNGC 2 cut(s) 524, 725
HpyF3I CTNAG 1 cut(s) 775
HpySE526I ACGT 3 cut(s) 183, 225, 594
Hsp92II CATG 5 cut(s) 271, 447, 531, 539, 691
HspAI GCGC 2 cut(s) 354, 719
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 752
LmnI GCTCC 2 cut(s) 766, 787
LpnPI CCDG 8 cut(s) 131, 157, 232, 244, 265, 500, 504, 860
LweI GCATC 1 cut(s) 701
MaeI CTAG 1 cut(s) 365
MaeII ACGT 3 cut(s) 183, 225, 594
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 9 cut(s) 109, 119, 332, 423, 581, 613, 626, 693, 769
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 764
MluCI AATT 4 cut(s) 39, 475, 654, 851
MlyI GAGTC 2 cut(s) 666, 871
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 4 cut(s) 145, 264, 397, 549
Mph1103I ATGCAT 1 cut(s) 541
MseI TTAA 2 cut(s) 552, 591
MspI CCGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 654
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 524, 725
NcoI CCATGG 2 cut(s) 443, 687
NdeII GATC 1 cut(s) 73
NlaIII CATG 5 cut(s) 271, 447, 531, 539, 691
NlaIV GGNNCC 1 cut(s) 789
NmuCI GTSAC 1 cut(s) 184
NsiI ATGCAT 1 cut(s) 541
NspI RCATGY 2 cut(s) 531, 539
NspV TTCGAA 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 338
PagI TCATGA 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 752
PfeI GAWTC 6 cut(s) 203, 278, 439, 828, 841, 890
PkrI GCNGC 1 cut(s) 59
PleI GAGTC 2 cut(s) 666, 870
PpsI GAGTC 2 cut(s) 666, 870
PsiI TTATAA 1 cut(s) 20
Psp1406I AACGTT 1 cut(s) 594
PspFI CCCAGC 1 cut(s) 874
PspN4I GGNNCC 1 cut(s) 789
PspPI GGNCC 3 cut(s) 4, 103, 249
PstI CTGCAG 1 cut(s) 307
PsuI RGATCY 1 cut(s) 73
SapI GCTCTTC 1 cut(s) 752
SaqAI TTAA 2 cut(s) 552, 591
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 3 cut(s) 4, 103, 249
SchI GAGTC 2 cut(s) 666, 871
SduI GDGCHC 1 cut(s) 764
SfaNI GCATC 1 cut(s) 701
SfcI CTRYAG 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 338
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 2 cut(s) 103, 249
SlaI CTCGAG 1 cut(s) 338
SmlI CTYRAG 2 cut(s) 338, 674
SmoI CTYRAG 2 cut(s) 338, 674
SpeI ACTAGT 1 cut(s) 364
Sse9I AATT 4 cut(s) 39, 475, 654, 851
SsiI CCGC 4 cut(s) 58, 317, 418, 838
SspI AATATT 1 cut(s) 159
SspMI CTAG 1 cut(s) 365
StyI CCWWGG 2 cut(s) 443, 687
TaaI ACNGT 1 cut(s) 575
TaiI ACGT 3 cut(s) 186, 228, 597
TaqI TCGA 6 cut(s) 177, 218, 236, 339, 434, 865
TasI AATT 4 cut(s) 39, 475, 654, 851
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 6 cut(s) 203, 278, 439, 828, 841, 890
Tru1I TTAA 2 cut(s) 552, 591
Tru9I TTAA 2 cut(s) 552, 591
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 4 cut(s) 256, 600, 614, 645
TspGWI ACGGA 3 cut(s) 277, 479, 779
VpaK11BI GGWCC 2 cut(s) 103, 249
XapI RAATTY 2 cut(s) 39, 475
XceI RCATGY 2 cut(s) 531, 539
XhoI CTCGAG 1 cut(s) 338
XspI CTAG 1 cut(s) 365
Zsp2I ATGCAT 1 cut(s) 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.