Prupe.6G050500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013406
Physical Location & Seq
Reverse (-)
3553980 .. 3558070
4091 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G050500.1

Sequence Viewer

Length: 759 bp
ATGTCAGAGATCTTTCACTCACTTGTCTTGAACAAAAGGTTCGACGATGCGACGCTGCGAGTATTGGAATCAGCGTTAGTTTCCAAGGACGTGAAGTCGTCGATAGAGGTCAGGTCCGGCTTGAGGCAGTTCCTGCGGTCCGAATCTCTCTCCGTTCTTCGAGAAATTTCCGAGAAAAGTGCCGGGGAGAAGCTTCTGGTTCTTGAATTTCTCGTTCGCTCCTTCGCACTTGTAGGCGATGTTGAGAGTTGCTTGGCTTTGAGGTATGAGGCTTTGCTTTTGCGGGACCTCAAGTCTGCGACTAATCCATGGCTGCAAGTTCCGTATACAGAATGGCTAAACTTTGCTCACCAGTCAAAAGATAGTGGTTTCTATTCTGTTGCAGGAAGGGCATGTGAAAATGCATTGGTTTGCTTTAAGAGGAAATGTGCTCAAGACCCAAAAACAGATGAAGTTTACGTTACAAAGAAATCTACTGAAGATGCAAAAGCAGATGGAGTATTAGAAAATGTGCAAGTTATTGAACAGATAAAGAGACTCAAGGATTGTGCCATGGCATCTGCTTCTTCCCACTCTGTTCAGGCGCAGACAGCAGACTACTTGAAAAAGAGACTAAAAGAAAAGAGCATGGATTGTTCTTCAGTTTGCAAGGACACAAAACCTGTAGCTAGCACTTTGTTCAGAAACGGAATAAAAAAGCGTAATCTACGAAAATTGAATGAGAGTCGAAGCTTGTCCAGGATGACTGATGGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.31

Weight (kDa)

9.18

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07060 AT1G07060 AT1G07060 AT1G07060
fragaria_vesca FvH4_3g39530
malus_domestica MD11G1063300.v1.1
prunus_persica Prupe.6G050500_v2.0.a1
pyrus_communis pycom11g05300
rosa_chinensis RchiOBHm_Chr5g0071301
rosa_laevigata RLG00000036200
rosa_multiflora Rmu_sc0006990.1_g000010
rosa_roxburghii Rroxscaffold_1G00009840
rosa_rugosa Rorug05G0411200
rosa_samantha Rh5AG467500 Rh5BG486000 Rh5CG510400 Rh5DG497200
rosa_wichuraiana Rw5G043430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 326
AciI CCGC 2 cut(s) 136, 283
AcsI RAATTY 2 cut(s) 165, 206
AcuI CTGAAG 2 cut(s) 498, 624
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 5 cut(s) 31, 206, 524, 604, 718
AhdI GACNNNNNGTC 2 cut(s) 94, 292
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 737
AluBI AGCT 3 cut(s) 193, 668, 732
AluI AGCT 3 cut(s) 193, 668, 732
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 2 cut(s) 529, 604
AlwNI CAGNNNCTG 1 cut(s) 133
ApeKI GCWGC 2 cut(s) 55, 313
ApoI RAATTY 2 cut(s) 165, 206
AspLEI GCGC 1 cut(s) 586
AspS9I GGNCC 3 cut(s) 114, 138, 286
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 668
AvaII GGWCC 3 cut(s) 114, 138, 286
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 2 cut(s) 42, 300
BccI CCATC 2 cut(s) 488, 743
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 1 cut(s) 739
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 529, 604
BfaI CTAG 1 cut(s) 669
BfmI CTRYAG 1 cut(s) 663
BglII AGATCT 1 cut(s) 9
BisI GCNGC 2 cut(s) 56, 314
BlsI GCNGC 2 cut(s) 57, 315
Bme1390I CCNGG 2 cut(s) 184, 739
Bme18I GGWCC 3 cut(s) 114, 138, 286
BmeRI GACNNNNNGTC 2 cut(s) 94, 292
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 3 cut(s) 114, 138, 286
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 2 cut(s) 184, 739
BmsI GCATC 3 cut(s) 37, 472, 566
BmtI GCTAGC 1 cut(s) 672
BpuEI CTTGAG 4 cut(s) 142, 275, 417, 524
BpuMI CCSGG 1 cut(s) 184
BsaJI CCNNGG 4 cut(s) 84, 183, 308, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 739
BseDI CCNNGG 4 cut(s) 84, 183, 308, 552
BseGI GGATG 1 cut(s) 747
BseLI CCNNNNNNNGG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 352
BseXI GCAGC 2 cut(s) 42, 300
BsiHKAI GWGCWC 1 cut(s) 433
BsiSI CCGG 2 cut(s) 117, 183
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 2 cut(s) 529, 604
BsmFI GGGAC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 2 cut(s) 9, 752
Bsp19I CCATGG 2 cut(s) 308, 552
BspACI CCGC 2 cut(s) 136, 283
BspLI GGNNCC 1 cut(s) 287
BspOI GCTAGC 1 cut(s) 672
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 4 cut(s) 84, 183, 308, 552
BssMI GATC 2 cut(s) 9, 752
BssNAI GTATAC 1 cut(s) 327
BssT1I CCWWGG 3 cut(s) 84, 308, 552
Bst1107I GTATAC 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 739
BstAPI GCANNNNNTGC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 670
BstDSI CCRYGG 2 cut(s) 308, 552
BstF5I GGATG 1 cut(s) 747
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 2 cut(s) 12, 755
BstMAI GTCTC 2 cut(s) 529, 604
BstMBI GATC 2 cut(s) 9, 752
BstMWI GCNNNNNNNGC 3 cut(s) 133, 389, 590
BstNI CCWGG 1 cut(s) 739
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 2 cut(s) 182, 737
BstSFI CTRYAG 1 cut(s) 663
BstV1I GCAGC 2 cut(s) 42, 300
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BstZ17I GTATAC 1 cut(s) 327
BtgI CCRYGG 2 cut(s) 308, 552
BtgZI GCGATG 1 cut(s) 252
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 747
Cac8I GCNNGC 1 cut(s) 670
CaiI CAGNNNCTG 1 cut(s) 133
CfoI GCGC 1 cut(s) 586
Cfr13I GGNCC 3 cut(s) 114, 138, 286
CpoI CGGWCCG 1 cut(s) 138
CseI GACGC 1 cut(s) 61
CspI CGGWCCG 1 cut(s) 138
CviAII CATG 4 cut(s) 309, 393, 553, 628
CviJI RGCY 8 cut(s) 120, 193, 257, 272, 313, 337, 668, 732
CviKI_1 RGCY 8 cut(s) 120, 193, 257, 272, 313, 337, 668, 732
DpnI GATC 2 cut(s) 11, 754
DpnII GATC 2 cut(s) 9, 752
DriI GACNNNNNGTC 2 cut(s) 94, 292
Eam1105I GACNNNNNGTC 2 cut(s) 94, 292
Eco130I CCWWGG 3 cut(s) 84, 308, 552
Eco47I GGWCC 3 cut(s) 114, 138, 286
Eco57I CTGAAG 2 cut(s) 498, 624
EcoO109I RGGNCCY 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 737
EcoT14I CCWWGG 3 cut(s) 84, 308, 552
EcoT22I ATGCAT 1 cut(s) 406
ErhI CCWWGG 3 cut(s) 84, 308, 552
FaeI CATG 4 cut(s) 312, 396, 556, 631
FaiI YATR 7 cut(s) 267, 310, 327, 394, 554, 629, 757
FaqI GGGAC 1 cut(s) 299
FatI CATG 4 cut(s) 308, 392, 552, 627
FauI CCCGC 1 cut(s) 276
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 2 cut(s) 56, 314
FokI GGATG 1 cut(s) 754
Fsp4HI GCNGC 2 cut(s) 56, 314
FspBI CTAG 1 cut(s) 669
GlaI GCGC 1 cut(s) 585
GluI GCNGC 2 cut(s) 56, 314
HapII CCGG 2 cut(s) 117, 183
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 586
Hin1II CATG 4 cut(s) 312, 396, 556, 631
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HindIII AAGCTT 2 cut(s) 191, 730
HinfI GANTC 4 cut(s) 68, 143, 537, 724
HpaII CCGG 2 cut(s) 117, 183
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 2 cut(s) 327, 457
Hpy188I TCNGA 4 cut(s) 7, 142, 172, 683
Hpy188III TCNNGA 4 cut(s) 28, 161, 203, 434
Hpy8I GTNNAC 2 cut(s) 327, 457
Hpy99I CGWCG 3 cut(s) 47, 55, 103
HpyAV CCTTC 2 cut(s) 232, 381
HpyCH4IV ACGT 2 cut(s) 90, 459
HpyCH4V TGCA 6 cut(s) 316, 383, 404, 485, 514, 648
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 389, 590
HpySE526I ACGT 2 cut(s) 90, 459
Hsp92II CATG 4 cut(s) 312, 396, 556, 631
HspAI GCGC 1 cut(s) 584
Kzo9I GATC 2 cut(s) 9, 752
LmnI GCTCC 1 cut(s) 224
Lsp1109I GCAGC 2 cut(s) 42, 300
LweI GCATC 3 cut(s) 37, 472, 566
MaeI CTAG 1 cut(s) 669
MaeII ACGT 2 cut(s) 90, 459
MaeIII GTNAC 1 cut(s) 460
MalI GATC 2 cut(s) 11, 754
MboI GATC 2 cut(s) 9, 752
MboII GAAGA 4 cut(s) 149, 491, 558, 630
MflI RGATCY 1 cut(s) 9
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 3 cut(s) 165, 206, 713
MlyI GAGTC 2 cut(s) 531, 733
MnlI CCTC 6 cut(s) 100, 117, 255, 262, 299, 414
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 1 cut(s) 417
MspI CCGG 2 cut(s) 117, 183
MspR9I CCNGG 2 cut(s) 184, 739
MvaI CCWGG 1 cut(s) 739
MwoI GCNNNNNNNGC 3 cut(s) 133, 389, 590
NciI CCSGG 1 cut(s) 184
NcoI CCATGG 2 cut(s) 308, 552
NdeII GATC 2 cut(s) 9, 752
NheI GCTAGC 1 cut(s) 668
NlaIII CATG 4 cut(s) 312, 396, 556, 631
NlaIV GGNNCC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 406
NspI RCATGY 1 cut(s) 396
PfeI GAWTC 2 cut(s) 68, 143
PfoI TCCNGGA 1 cut(s) 737
PkrI GCNGC 2 cut(s) 57, 315
PleI GAGTC 2 cut(s) 531, 732
PpsI GAGTC 2 cut(s) 531, 732
PpuMI RGGWCCY 1 cut(s) 286
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 737
PspGI CCWGG 1 cut(s) 737
PspN4I GGNNCC 1 cut(s) 287
PspPI GGNCC 3 cut(s) 114, 138, 286
PspPPI RGGWCCY 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 9
Rsr2I CGGWCCG 1 cut(s) 138
RsrII CGGWCCG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 2 cut(s) 56, 314
Sau3AI GATC 2 cut(s) 9, 752
Sau96I GGNCC 3 cut(s) 114, 138, 286
SchI GAGTC 2 cut(s) 531, 733
ScrFI CCNGG 2 cut(s) 184, 739
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 3 cut(s) 37, 472, 566
SfcI CTRYAG 1 cut(s) 663
SinI GGWCC 3 cut(s) 114, 138, 286
SmlI CTYRAG 4 cut(s) 121, 290, 432, 539
SmoI CTYRAG 4 cut(s) 121, 290, 432, 539
Sse9I AATT 3 cut(s) 165, 206, 713
SsiI CCGC 2 cut(s) 136, 283
SspMI CTAG 1 cut(s) 669
StyD4I CCNGG 2 cut(s) 182, 737
StyI CCWWGG 3 cut(s) 84, 308, 552
TaiI ACGT 2 cut(s) 93, 462
TaqI TCGA 4 cut(s) 42, 101, 160, 727
TasI AATT 3 cut(s) 165, 206, 713
TfiI GAWTC 2 cut(s) 68, 143
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseI GCWGC 2 cut(s) 55, 313
TspDTI ATGAA 1 cut(s) 465
TspGWI ACGGA 3 cut(s) 142, 312, 702
VpaK11BI GGWCC 3 cut(s) 114, 138, 286
XapI RAATTY 2 cut(s) 165, 206
XceI RCATGY 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 326
XspI CTAG 1 cut(s) 669
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.