Rw5G043430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0013406
Physical Location & Seq
Forward (+)
76263148 .. 76265765
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043430.1

Sequence Viewer

Length: 618 bp
ATGAGGTCTGAATCCCTCTCCGTTCTGAAAGAAATTTCTGAGAAAAACGTCGAGGAGAAGCTTCTGGTTCTCGAATTTCTCGTTCGCACTTTCGCGCTCGTCGGCGATGTTGAGAGTTGCTTGGCTTTGAGATATGAGGCTTTGCTTTTGCGAGATCTCAAGTCTAGAACTCACCAATGGCTGGAGGTGCCATATCTGGAATGGCAGAACTTTGCTCACCAGTCACTGGACAATGGTTTCTATTCAATTGCGGCAAAGGCTTGTGAAAATGCATTGTTATCCCTTGAGGGGAAGTCTGCTGAACAGCCTACACCAGATGGAGTTTGCATTGAGAGGATATCTACTGAAGACCCCAAAACAGATGACGTCTTTGAAACTGAACAAGTTATTCAAAAGATAAAGAAACTCAAGGAATGTGCCATGGCATCTGCTTCTTCCCACTCAGTTCAAACGCAAACGGCAGACTACTTGAAAAAGAGACTAAAACAGAAGAGTATGGTGTGCTCTCCAGTTCTCAAGAAGACAACATGTGTAGCGAGCACTTTGTTCAGAAATGGGATCAAAAAGCGGAATCAGCGAAAATTGAATGAAAGCAGAAGCTTATTAGGGTGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.27

Weight (kDa)

8.68

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07060 AT1G07060 AT1G07060 AT1G07060
fragaria_vesca FvH4_3g39530
malus_domestica MD11G1063300.v1.1
prunus_persica Prupe.6G050500_v2.0.a1
pyrus_communis pycom11g05300
rosa_chinensis RchiOBHm_Chr5g0071301
rosa_laevigata RLG00000036200
rosa_multiflora Rmu_sc0006990.1_g000010
rosa_roxburghii Rroxscaffold_1G00009840
rosa_rugosa Rorug05G0411200
rosa_samantha Rh5AG467500 Rh5BG486000 Rh5CG510400 Rh5DG497200
rosa_wichuraiana Rw5G043430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 187
AccB7I CCANNNNNTGG 2 cut(s) 181, 226
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 251, 568
AclWI GGATC 1 cut(s) 566
AcsI RAATTY 2 cut(s) 33, 74
AcuI CTGAAG 1 cut(s) 366
AcyI GRCGYC 1 cut(s) 366
AfiI CCNNNNNNNGG 3 cut(s) 181, 226, 288
AflIII ACRYGT 1 cut(s) 527
AgsI TTSAA 6 cut(s) 246, 374, 392, 449, 472, 586
AluBI AGCT 2 cut(s) 61, 600
AluI AGCT 2 cut(s) 61, 600
Alw21I GWGCWC 2 cut(s) 506, 542
Alw26I GTCTC 1 cut(s) 472
AlwI GGATC 1 cut(s) 566
AlwNI CAGNNNCTG 1 cut(s) 226
ApoI RAATTY 2 cut(s) 33, 74
AspLEI GCGC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 164, 209
BanI GGYRCC 1 cut(s) 187
BbsI GAAGAC 2 cut(s) 354, 527
Bbv12I GWGCWC 2 cut(s) 506, 542
BccI CCATC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 472
BfaI CTAG 1 cut(s) 165
BglII AGATCT 1 cut(s) 154
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 1 cut(s) 434
BpiI GAAGAC 2 cut(s) 354, 527
BpmI CTGGAG 2 cut(s) 203, 492
BpuEI CTTGAG 4 cut(s) 143, 305, 392, 500
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 420
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 226, 288
Bse1I ACTGG 3 cut(s) 220, 231, 509
BseDI CCNNGG 1 cut(s) 420
BseLI CCNNNNNNNGG 3 cut(s) 181, 226, 288
BseMII CTCAG 2 cut(s) 30, 456
BseNI ACTGG 3 cut(s) 220, 231, 509
BseRI GAGGAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 187
BsiHKAI GWGCWC 2 cut(s) 506, 542
BslI CCNNNNNNNGG 3 cut(s) 181, 226, 288
BsmAI GTCTC 1 cut(s) 472
Bsp1286I GDGCHC 2 cut(s) 506, 542
Bsp143I GATC 2 cut(s) 154, 558
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 2 cut(s) 251, 568
BspCNI CTCAG 2 cut(s) 31, 455
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 1 cut(s) 566
BspT107I GGYRCC 1 cut(s) 187
BsrI ACTGG 3 cut(s) 220, 231, 509
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 2 cut(s) 154, 558
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 420
Bst6I CTCTTC 1 cut(s) 485
BstACI GRCGYC 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 538
BstDEI CTNAG 2 cut(s) 39, 442
BstDSI CCRYGG 1 cut(s) 420
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 2 cut(s) 157, 561
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 2 cut(s) 154, 558
BstMWI GCNNNNNNNGC 3 cut(s) 187, 257, 574
BstNSI RCATGY 1 cut(s) 531
BstUI CGCG 1 cut(s) 95
BstV2I GAAGAC 2 cut(s) 354, 527
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 420
BtgZI GCGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 538
CaiI CAGNNNCTG 1 cut(s) 226
CfoI GCGC 1 cut(s) 97
CviAII CATG 2 cut(s) 421, 528
CviJI RGCY 7 cut(s) 61, 125, 140, 181, 260, 307, 600
CviKI_1 RGCY 7 cut(s) 61, 125, 140, 181, 260, 307, 600
DdeI CTNAG 2 cut(s) 39, 442
DpnI GATC 2 cut(s) 156, 560
DpnII GATC 2 cut(s) 154, 558
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 420
Eco32I GATATC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 366
EcoRV GATATC 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 420
EcoT22I ATGCAT 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 2 cut(s) 424, 531
FaiI YATR 5 cut(s) 135, 193, 422, 497, 529
FatI CATG 2 cut(s) 420, 527
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 1 cut(s) 165
GlaI GCGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 252
GsuI CTGGAG 2 cut(s) 203, 492
HhaI GCGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 2 cut(s) 424, 531
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HindIII AAGCTT 2 cut(s) 59, 598
HinfI GANTC 2 cut(s) 11, 571
HphI GGTGA 2 cut(s) 164, 209
Hpy188I TCNGA 4 cut(s) 10, 27, 40, 551
Hpy188III TCNNGA 4 cut(s) 71, 165, 197, 517
Hpy99I CGWCG 2 cut(s) 53, 104
HpyCH4IV ACGT 2 cut(s) 48, 366
HpyCH4V TGCA 2 cut(s) 272, 327
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 257, 574
HpyF3I CTNAG 2 cut(s) 39, 442
HpySE526I ACGT 2 cut(s) 48, 366
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 2 cut(s) 424, 531
HspAI GCGC 1 cut(s) 95
Kzo9I GATC 2 cut(s) 154, 558
LpnPI CCDG 7 cut(s) 50, 167, 182, 212, 233, 327, 522
LweI GCATC 1 cut(s) 434
MaeI CTAG 1 cut(s) 165
MaeII ACGT 2 cut(s) 48, 366
MaeIII GTNAC 1 cut(s) 222
MalI GATC 2 cut(s) 156, 560
MboI GATC 2 cut(s) 154, 558
MboII GAAGA 4 cut(s) 359, 426, 502, 532
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 506, 542
MluCI AATT 4 cut(s) 33, 74, 246, 581
MnlI CCTC 6 cut(s) 26, 46, 130, 178, 280, 327
Mph1103I ATGCAT 1 cut(s) 274
MunI CAATTG 1 cut(s) 246
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 187, 257, 574
NcoI CCATGG 1 cut(s) 420
NdeII GATC 2 cut(s) 154, 558
NlaIII CATG 2 cut(s) 424, 531
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 222
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 1 cut(s) 531
PciI ACATGT 1 cut(s) 527
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 2 cut(s) 11, 571
PflMI CCANNNNNTGG 2 cut(s) 181, 226
PkrI GCNGC 1 cut(s) 253
PscI ACATGT 1 cut(s) 527
PspN4I GGNNCC 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 154
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 2 cut(s) 154, 558
SduI GDGCHC 2 cut(s) 506, 542
SetI ASST 6 cut(s) 8, 51, 63, 189, 369, 602
SfaNI GCATC 1 cut(s) 434
SmlI CTYRAG 4 cut(s) 158, 284, 407, 515
SmoI CTYRAG 4 cut(s) 158, 284, 407, 515
Sse9I AATT 4 cut(s) 33, 74, 246, 581
SsiI CCGC 2 cut(s) 251, 568
SspMI CTAG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 420
TaiI ACGT 2 cut(s) 51, 369
TaqI TCGA 2 cut(s) 51, 72
TasI AATT 4 cut(s) 33, 74, 246, 581
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 11, 571
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 603
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 231
Van91I CCANNNNNTGG 2 cut(s) 181, 226
XapI RAATTY 2 cut(s) 33, 74
XbaI TCTAGA 1 cut(s) 164
XceI RCATGY 1 cut(s) 531
XcmI CCANNNNNNNNNTGG 1 cut(s) 198
XspI CTAG 1 cut(s) 165
ZraI GACGTC 1 cut(s) 367
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.