Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016565

Physical Location & Seq

Genomic Coordinates Forward (+)

2187776 .. 2188733

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATCGATCCCTCCAAAGCACACACGCAAAACTCGTGGCGCGTGACATCCAACGCCTGACACAGTCACCTACAGAATCCAACTCTTTCTCTCTGCTTGGCGGAGCGTGCGTTTCACGCGTAGAGATAGTAGGCACAATCGTCTCTCGTGATCTGACCCCAAAGTTTCTCAAGTTCGGCGTCGACGATGGCACCGGCTGCGTCACGTGCGTCATGTGGCTCAACCAACTCACGTCTTCTTACTTCTCCCGGTGGGATCCAGCCACGATTCTGCTGCTCGCAAGTGCCGCGCGGAAACAAGCCGCACAAATCAGAATCGGAGCCGTGGCTCGCGTTCGCGGCCGCGTCGGCTCGTACAGAGGAGTGATGCAGATCACGGCTAATGTGGCGGTGGCCGAGAGAGACCCGAACGCGGAGATCTTGCACTGGTTGGAGTGTTTAAAGCTTGGTCAAAGTTGTTATCGTGTTCGTATTCAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016233 GO:0031974 GO:0031981 GO:0032200 GO:0034641 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0098687 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_anti-codon

Protein Analysis

160

Amino Acids

17.6

Weight (kDa)

9.72

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_anti-codon	PF01336	41 - 128	2.8e-08	OB-fold nucleic acid binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016565)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07130
fragaria_vesca	FvH4_2g23151
malus_domestica	MD03G1260600.v1.1 MD15G1065600.v1.1
pyrus_communis	pycom03g20820
rosa_chinensis	RchiOBHm_Chr6g0290411
rosa_laevigata	RLG00000012221
rosa_multiflora	Rmu_sc0024006.1_g000001
rosa_roxburghii	Rroxscaffold_7G00177090
rosa_rugosa	Rorug06G0212600
rosa_samantha	Rh6BG330000 Rh6CG336000 Rh6DG322900
rosa_wichuraiana	Rw6G027870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	8 cut(s)	43, 120, 290, 292, 333, 339, 345, 413
AciI	CCGC	8 cut(s)	102, 288, 292, 303, 339, 343, 389, 413
AclWI	GGATC	4 cut(s)	3, 12, 251, 264
AcoI	YGGCCR	2 cut(s)	340, 393
AcvI	CACGTG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	234
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	148, 396
AlwI	GGATC	4 cut(s)	3, 12, 251, 264
AoxI	GGCC	2 cut(s)	340, 393
ApeKI	GCWGC	2 cut(s)	198, 274
AspLEI	GCGC	2 cut(s)	43, 292
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	60
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	191
BauI	CACGAG	2 cut(s)	35, 147
BbrPI	CACGTG	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	185, 261
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	308, 393
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	148, 396
BfmI	CTRYAG	1 cut(s)	72
BglI	GCCNNNNNGGC	1 cut(s)	348
BglII	AGATCT	1 cut(s)	417
BisI	GCNGC	6 cut(s)	199, 275, 288, 303, 340, 343
BlsI	GCNGC	6 cut(s)	200, 276, 289, 304, 341, 344
Bme1390I	CCNGG	1 cut(s)	250
BmgBI	CACGTC	1 cut(s)	234
BmiI	GGNNCC	3 cut(s)	193, 258, 322
BmrFI	CCNGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	7
BsaAI	YACGTR	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	431
Bse8I	GATNNNNATC	1 cut(s)	371
BseCI	ATCGAT	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	375
BseX3I	CGGCCG	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	185, 261
Bsh1236I	CGCG	8 cut(s)	43, 120, 290, 292, 333, 339, 345, 413
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	342, 395
BshNI	GGYRCC	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	7
BsiEI	CGRYCG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	195, 250
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	2 cut(s)	148, 396
BsmBI	CGTCTC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	342, 395
Bso31I	GGTCTC	1 cut(s)	396
Bsp143I	GATC	6 cut(s)	4, 8, 151, 256, 372, 417
BspACI	CCGC	8 cut(s)	102, 288, 292, 303, 339, 343, 389, 413
BspANI	GGCC	2 cut(s)	342, 395
BspDI	ATCGAT	1 cut(s)	7
BspFNI	CGCG	8 cut(s)	43, 120, 290, 292, 333, 339, 345, 413
BspLI	GGNNCC	3 cut(s)	193, 258, 322
BspPI	GGATC	4 cut(s)	3, 12, 251, 264
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	6 cut(s)	4, 8, 151, 256, 372, 417
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	2 cut(s)	35, 147
Bst2BI	CACGAG	2 cut(s)	35, 147
Bst4CI	ACNGT	1 cut(s)	66
BstACI	GRCGYC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	109, 279, 331
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	8 cut(s)	43, 120, 290, 292, 333, 339, 345, 413
BstHHI	GCGC	2 cut(s)	43, 292
BstKTI	GATC	6 cut(s)	7, 11, 154, 259, 375, 420
BstMAI	GTCTC	2 cut(s)	148, 396
BstMBI	GATC	6 cut(s)	4, 8, 151, 256, 372, 417
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	8 cut(s)	108, 117, 198, 207, 287, 339, 348, 386
BstSCI	CCNGG	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	72
BstUI	CGCG	8 cut(s)	43, 120, 290, 292, 333, 339, 345, 413
BstV1I	GCAGC	2 cut(s)	185, 261
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	256, 417
BstYI	RGATCY	2 cut(s)	256, 417
BstZI	CGGCCG	1 cut(s)	340
Bsu15I	ATCGAT	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	342, 395
BsuTUI	ATCGAT	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	324
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	3 cut(s)	109, 279, 331
CciNI	GCGGCCGC	1 cut(s)	340
CfoI	GCGC	2 cut(s)	43, 292
Cfr10I	RCCGGY	1 cut(s)	194
ClaI	ATCGAT	1 cut(s)	7
CseI	GACGC	4 cut(s)	169, 190, 199, 334
Csp6I	GTAC	1 cut(s)	355
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	1 cut(s)	214
CviQI	GTAC	1 cut(s)	355
DpnI	GATC	6 cut(s)	6, 10, 153, 258, 374, 419
DpnII	GATC	6 cut(s)	4, 8, 151, 256, 372, 417
DraI	TTTAAA	1 cut(s)	441
EaeI	YGGCCR	2 cut(s)	340, 393
EagI	CGGCCG	1 cut(s)	340
EciI	GGCGGA	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	396
Eco52I	CGGCCG	1 cut(s)	340
Eco72I	CACGTG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	1 cut(s)	217
FaiI	YATR	1 cut(s)	215
FatI	CATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	6 cut(s)	199, 275, 288, 303, 340, 343
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	6 cut(s)	199, 275, 288, 303, 340, 343
GlaI	GCGC	2 cut(s)	42, 291
GluI	GCNGC	6 cut(s)	199, 275, 288, 303, 340, 343
HaeIII	GGCC	2 cut(s)	342, 395
HapII	CCGG	2 cut(s)	195, 250
HgaI	GACGC	4 cut(s)	169, 190, 199, 334
HhaI	GCGC	2 cut(s)	43, 292
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	2 cut(s)	41, 290
HinP1I	GCGC	2 cut(s)	41, 290
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	3 cut(s)	77, 268, 315
HpaII	CCGG	2 cut(s)	195, 250
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	156, 314, 320
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	3 cut(s)	185, 188, 350
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4IV	ACGT	2 cut(s)	206, 233
HpyCH4V	TGCA	2 cut(s)	370, 424
HpyF10VI	GCNNNNNNNGC	8 cut(s)	108, 117, 198, 207, 287, 339, 348, 386
HpySE526I	ACGT	2 cut(s)	206, 233
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	2 cut(s)	41, 290
Kzo9I	GATC	6 cut(s)	4, 8, 151, 256, 372, 417
LmnI	GCTCC	2 cut(s)	104, 320
LpnPI	CCDG	5 cut(s)	71, 208, 263, 273, 412
Lsp1109I	GCAGC	2 cut(s)	185, 261
LweI	GCATC	1 cut(s)	357
MaeII	ACGT	2 cut(s)	206, 233
MaeIII	GTNAC	3 cut(s)	44, 66, 202
MalI	GATC	6 cut(s)	6, 10, 153, 258, 374, 419
MboI	GATC	6 cut(s)	4, 8, 151, 256, 372, 417
MboII	GAAGA	1 cut(s)	228
MflI	RGATCY	2 cut(s)	256, 417
MluI	ACGCGT	1 cut(s)	118
MmeI	TCCRAC	3 cut(s)	76, 105, 411
MnlI	CCTC	2 cut(s)	23, 353
MseI	TTAA	2 cut(s)	440, 481
MspI	CCGG	2 cut(s)	195, 250
MspR9I	CCNGG	1 cut(s)	250
MvnI	CGCG	8 cut(s)	43, 120, 290, 292, 333, 339, 345, 413
MwoI	GCNNNNNNNGC	8 cut(s)	108, 117, 198, 207, 287, 339, 348, 386
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	6 cut(s)	4, 8, 151, 256, 372, 417
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	3 cut(s)	193, 258, 322
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	3 cut(s)	44, 66, 202
NotI	GCGGCCGC	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	2 cut(s)	33, 183
PfeI	GAWTC	3 cut(s)	77, 268, 315
PflFI	GACNNNGTC	1 cut(s)	64
PkrI	GCNGC	6 cut(s)	200, 276, 289, 304, 341, 344
PmaCI	CACGTG	1 cut(s)	207
PmlI	CACGTG	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	207
PspCI	CACGTG	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	193, 258, 322
PsuI	RGATCY	2 cut(s)	256, 417
PsyI	GACNNNGTC	1 cut(s)	64
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	440, 481
SatI	GCNGC	6 cut(s)	199, 275, 288, 303, 340, 343
Sau3AI	GATC	6 cut(s)	4, 8, 151, 256, 372, 417
ScrFI	CCNGG	1 cut(s)	250
SetI	ASST	4 cut(s)	73, 209, 236, 447
SfaNI	GCATC	1 cut(s)	357
SfcI	CTRYAG	1 cut(s)	72
SgrDI	CGTCGACG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	8 cut(s)	102, 288, 292, 303, 339, 343, 389, 413
StyD4I	CCNGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	66
TaiI	ACGT	2 cut(s)	209, 236
TaqI	TCGA	2 cut(s)	7, 183
TauI	GCSGC	4 cut(s)	290, 305, 342, 345
TfiI	GAWTC	3 cut(s)	77, 268, 315
Tru1I	TTAA	2 cut(s)	440, 481
Tru9I	TTAA	2 cut(s)	440, 481
TscAI	CASTG	1 cut(s)	431
TseFI	GTSAC	3 cut(s)	44, 66, 202
TseI	GCWGC	2 cut(s)	198, 274
Tsp45I	GTSAC	3 cut(s)	44, 66, 202
TspRI	CASTG	1 cut(s)	431
Tth111I	GACNNNGTC	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.